Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F13 I0 R1
|
230 |
5035.0 |
9125430 |
98.4% |
8979423 |
135.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,460,581 |
A→C |
20.6% |
intergenic (‑3/‑155) |
yhjY ← / → tag |
autotransporter outer membrane beta‑barrel domain‑containing protein/DNA‑3‑methyladenine glycosylase I |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,460,581 | 0 | A | C | 20.6%
| 242.8
/ 32.4
| 179 | intergenic (‑3/‑155) | yhjY/tag | autotransporter outer membrane beta‑barrel domain‑containing protein/DNA‑3‑methyladenine glycosylase I |
| Reads supporting (aligned to +/- strand): ref base A (99/40); new base C (2/38); total (101/78) |
| Fisher's exact test for biased strand distribution p-value = 9.62e-15 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 188 total aligned reads displayed.
TGTGGAATGTCCGGGTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGACTTTTTCACCGATGCGTCAAGAAAAGCGGCTGAAATTTTTACGATCGGGTA > NZ_CP022686/2460444‑2460719
|
tgtgGAATGTCCGGGTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCTCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAaca > 5:1077969/1‑140 (MQ=255)
gtgtattGTCGGGGTTGCTTATAAACTTTATTTTGTTTTTGCCCGGCGTATGCTGTGTTGATAAAAACGGCACTGATTACCACGCTCGAAAGCTGGATTCGCTGCCTGCTACCCCCGTTTTTTTTTTTTATCATAAccac < 6:777183/134‑1 (MQ=255)
tgGAATGTCCGGGTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAacc > 7:397539/1‑137 (MQ=255)
tgGAATGTCCGGGTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACg > 3:708284/1‑140 (MQ=255)
tgGAATGTCCGGGTTGCGTATCAACCATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACAACGCTCGCAAGAAGGATTAGCTGCCAGCGACAACCGATTTTTTTTATGATAATTAaca > 7:308792/1‑138 (MQ=255)
tGTCCGGGTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGCCCACCGCTTTTTTTTATGATCATTAACACGACTcc > 6:509826/1‑140 (MQ=255)
tGTCCGGGTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTcc > 1:1140211/1‑140 (MQ=255)
tGTCCGGGTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTcc > 4:765332/1‑140 (MQ=255)
tGTCCGGGTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTcc > 2:120850/1‑140 (MQ=255)
tGTCCGGGTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTcc > 1:52667/1‑140 (MQ=255)
ggccGGGTTTCTTATCAACTATATTTTCTTGTTGCCAGGCGTATGGTGTGTTTATAAAAAAGCCACTTATAACCACGCTCGAAAGCAGGCTTAGCTGCCAGCGACCCCCGCTTTTTTTTATGATCATTAACACGACTCCa < 6:362788/138‑1 (MQ=255)
ccGGGTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAgg > 4:837604/1‑140 (MQ=255)
ccGGGTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAgg > 1:881168/1‑140 (MQ=255)
ccGGGTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACAACCGCTTTTTTTTATGATCATTAACACGACTCCAgg > 2:1149760/1‑140 (MQ=255)
gggTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGa > 3:383630/1‑140 (MQ=255)
gTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCg > 2:176977/1‑140 (MQ=255)
tATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGa > 2:974115/1‑140 (MQ=255)
atcatttatatatTTTTGTGGCCCGGCGTATGGTTTTTTTAAAAAAAAGCCACTTATACCCACGCTCCCACGCAGGCTTAGCTGCCTCCTACCACCGCTTTTTTTTATGTTAATAAACACGACTCCAGGGAAGAGCCGaa < 4:383630/133‑1 (MQ=255)
aacAACTATATATTCTTGTGGCCTGGCGTAAGCTGTGTTGAGAAAAACGCCACTGATTACCACGCGCCCAACCAGGCTTCGCTGCCAGCCACCCCCGCTTTTTTTTATGATAATTACCACGACTCCAGGGAAGAGCCGaa < 4:909924/138‑1 (MQ=255)
cGATATTTTCTTGTGGCCCGGCGTACGCTGGGTTTACAAAAAAGCAACTTATACCCCCGCCCGCACGCTGGGTTCGCTGCCAGCCCCCACCGCTTTTTTTTATCATCATTACCACGACTCCAGGGAAGAGCCGAATTc < 8:1080777/138‑1 (MQ=255)
cGAAATATTCTTGTCGCCTGGCGTACGCTGTGTTGACAAAAATTCCACGTTTTACCACGCTCGCATGAAGGCTTTTCTCCCTCCGACCACCGATTTTTTATATTATCATAAACACGACTCCAGGGAAGAGCCGAATTc < 8:887882/138‑1 (MQ=255)
atatatTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCa > 1:263823/1‑140 (MQ=255)
atatatTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCa > 4:558148/1‑140 (MQ=255)
atatatTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCa > 1:602506/1‑140 (MQ=255)
taaatTCTTGTTCCCCGCCTTAATCTGTGTTCATAAAAAAGCACCTTATACCCACGCCCCCACTCTGGATTACCTGCCCGCGACCACCGCTTTTTTTTATCATCATAAACACGACTCCAGGGAAGAGCCGAATTCGGCaa < 4:286541/137‑1 (MQ=255)
tCTTGTTGCCCGGCTTCAGAGGTTTTGACAAAAACGCCAATGAATACCACGCCCGCAACCCGGCTTCGCGGCCAGCGACCACCGATTTTTTTATTGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAAtatta < 6:274724/140‑1 (MQ=255)
tCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTGTTTTTTATGATCATTAACAAGACTCCAGGGAAGAGCCGAATTAGGCAAtatta > 3:423954/1‑140 (MQ=255)
ttgttgCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTCCCAGAGACCACCGCTTTTTTTTAGGATCATTACCAATCCACCAGCGAAGAGCCGAATTCGGCAATattatt > 2:642192/1‑140 (MQ=255)
gttgCCAGGCGTAAGCTGTTTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCAAGCGACCACCGCTTTTTTTTATTATCATTAACACGACTCAAGGTAAGAGCCGAATTCGGCAATATTATTgg > 3:809122/1‑139 (MQ=255)
gttgCCAGGCGTAAGCTGTGTTGAGATAAAAGGCACTGATTACCACGCTCGCAAGAAGGCTTAGCTGCCAGCGACCACCGCTGTTTTTTATGATAATTAACACGCCTCCAGGGAAGAGCCGAAGTCGGCAATATTATTGt > 1:373009/1‑140 (MQ=255)
gttgCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGCCTCCAGGGAAGAGCCGAATTCGGCAATATTATTGt > 2:1161900/1‑140 (MQ=255)
gttgCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATAATTAACACGACTCCATGGAAGAGCCGAATTCGGCAATATTATTGt > 2:521081/1‑140 (MQ=255)
ttgCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGCCTCCAGGGAAGAGCCGAATTCGGCAATATTATTGtg > 5:831845/1‑139 (MQ=255)
ttgCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTc > 2:773783/1‑140 (MQ=255)
ttgCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTc > 3:1060430/1‑140 (MQ=255)
tgCCTGGCTTATGTTGTGTTGTTAAAAACGGCATTTATTACCACGCGGGCAAGCTGGCTTTGCTGCCAGCCACCACCTTTTTTTTTTTTTATCATAAACACTACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCa < 4:1145295/140‑1 (MQ=255)
tgCCTGGCGTCTGCTGTGTTCAGAAAAAAGCAACGGATACCCACGCGCGCAAGCAGGCTTAGCTGCCCGCTACCCCCGATTTTTTTAATTATCATTCACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCa < 6:800931/140‑1 (MQ=255)
tgCCAGGCGTAAGCTGTGTTGATAAAAAATCCAGTTATTACCACGCTCCCAAGCTGGCTTAGCTGCCAGCGACCACCGTTTTTTTTTATTACCATAAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCa < 4:1040356/140‑1 (MQ=255)
ggcaaGGCGTACGTGGTTTTGAGAAAAAAGGCACTGATTACCCCGCTCGAACGCTGGCTTACCTGCCAGCGACCACCGCTTTTTTTTATTACCATAACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGt < 8:815119/134‑1 (MQ=255)
gcccAGGCGTAAGCGGTTTTGCTAAAAACGGCACTGATTACCACCCTCCCAAGCAGGCTTCGCTGCCAGCGACCACCGCTTTTTTTTATGATCATAACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCa < 2:1105492/138‑1 (MQ=255)
gCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTc > 8:1010642/1‑138 (MQ=255)
gCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCAt > 5:660227/1‑140 (MQ=255)
ccAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCa > 7:448183/1‑138 (MQ=255)
cAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATTATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTTTTGTCAt > 8:122653/1‑138 (MQ=255)
gTAAGTTGGTTTGAGAAAAACGGCCCTCATTACCACGCGCGCACTCCGGCTTCGCTGCCCGCGACCACCGCTTTTTTTTATTAGCATAAACCCGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGa < 4:650357/140‑1 (MQ=255)
gTAAGCGGTTTTTAGAAAACAGGAAATCATTCCCAGCCGCTCAAGCTGGTTTTGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGa < 2:188114/140‑1 (MQ=255)
aGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCAAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAgg > 5:227693/1‑140 (MQ=255)
tgttTTGACAAAAAAGCCAATTATACCCACGCGCGCAAGCTGGCTTAGCTCCCAGCGACAACCGTTTTTTTTTTTCATCATAAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGata < 2:600707/140‑1 (MQ=255)
ttttGAGAAAAACGGCAATTATTACCACGCTCCCAAGCTGGCTTAGCTCCCAGCGACCACCGATTTTTTTTATAAAAATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATc < 5:444623/138‑1 (MQ=255)
tgtTGAGAAAAAAGGCACTGATTACCACGCTCGCACGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCTTTGTATGAAGGATATc > 4:44284/1‑140 (MQ=255)
tgtTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGCCCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGATTTCGGCAATATTATTGTCATTGTATGAAGGATATc > 6:254691/1‑140 (MQ=255)
tgtTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGCCGCCAGGGAAGAGCCGAATTCGGCAATAATATTGTCATTGTATGAAGGATATc > 5:590648/1‑140 (MQ=255)
tgtTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAggctgtc > 1:298412/1‑135 (MQ=255)
tgtTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATc > 6:251437/1‑140 (MQ=255)
tgtTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATc > 4:612964/1‑140 (MQ=255)
tgtTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATc > 2:988972/1‑140 (MQ=255)
tgtTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATc > 4:1034849/1‑140 (MQ=255)
tgtTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGATTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGACGAATTCGGCAATATTATTTTCATTGTATGAAGTATATc > 2:305652/1‑140 (MQ=255)
gtTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGACAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCg > 3:337199/1‑140 (MQ=255)
ttGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATc > 7:467259/1‑138 (MQ=255)
ttataaaaacGGCACTTATTACCACGCTCGCAAGCTGGCTTAGCGGCCAGCGACCACCGCTTTTTTTTATTATAATAAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCggg < 4:953389/136‑1 (MQ=255)
tgtcaaaaaaGGCACTGAATACCACCCTCGCACGCAGGCTTAGCGGCCAGCGACCACCTGTTTTTTTTATGAACATAACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCggg < 5:1040795/136‑1 (MQ=255)
tctcaaaaatTGCAATTATTACCCAGCTCGCTCGTTGGCTTAGCTGCCTCCGACCACGGCTTTTTTTTATGATAATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCg < 7:264623/134‑1 (MQ=255)
tcacaaaaaaGGCACTTATAACCACGCTCCCACGCTGGCTTAGCTGCCAGCGACCACCGTTTTTTTTTATGATAATTACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCggg < 6:1019601/136‑1 (MQ=255)
tGATAAAAACGCCACTGATAACCACCGTCTCAACCAGTGTTAGGTGCCAGCGACAACCGTTTTTTTTTATGATAAATACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCggg < 5:477176/140‑1 (MQ=255)
tGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCGTTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCg > 8:698205/1‑138 (MQ=255)
aaaaaaGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCAta > 5:1102485/1‑140 (MQ=255)
aaaaGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCAta > 7:75402/1‑138 (MQ=255)
aaaGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCAtagta > 6:607067/1‑140 (MQ=255)
aaaGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCAtagta > 5:519908/1‑140 (MQ=255)
aGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCAtagta > 8:56430/1‑138 (MQ=255)
ggCACTTATTACCCCGCTCCCAAGCAGGATTAGCTGCCCGCGACCACCGTTTTTTTTTATTATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGcc < 4:224774/140‑1 (MQ=255)
ggCACTTATTACCCCGCGCCAACGCAGGCTTAGCGCCCAGCGACCCCCGATTTTTTTTATGAACATAAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGcc < 4:259941/140‑1 (MQ=255)
ggCACTTATCACCACGAGCCCAAGCCGGCTTAGCGGCCAGCCACCACCGTTTTTTTTTATGATCATAACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGcc < 2:241843/140‑1 (MQ=255)
gccccTGATCCCCCCGCGCGCATCCAGGCCTCGCCGCCAGCTCCCCCCCCTTTTTATTATTATCATAACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGcc < 5:159253/136‑1 (MQ=255)
gccccTGATACCCCCGCTCCCAAGCTGGCTTCGCGCCCACCGACCACGGTTTTTTTTATTCAACATAACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGcc < 1:99447/136‑1 (MQ=255)
gccACTTATTACCACGCCCCCATGCCGGCTTAGCGGCCAGCCACCACCCCTTTTTTTTTTTATCTTTACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGcc < 6:698313/138‑1 (MQ=255)
gccACTTATAACCACGCTCGCAAGCCGGCTTCGATGCCAGCGACCCCCGCTTTTTTTTATCATCATAAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCAtagtag < 8:538767/136‑1 (MQ=255)
gccACTGTTTACCACGCTCGAACGCAGGCTTCGGTGCCAGCCACCACCGTTTTTTTTTATCATCATAAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGcc < 2:378034/138‑1 (MQ=255)
gccACTGATACCCCCGCACCCACGCAGGCTTCGCTGCCAGCGACCACCGCTTTTTTTTATCAAAATAACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCAtagtag < 8:202013/136‑1 (MQ=255)
cccACTGATTCCCCCGCTCGCACCCAGGCTTAGCTGCCAGCCACCCCCGCTTTTTTTTATGATCATAAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGcc < 4:996577/138‑1 (MQ=255)
atacccACGCCCGCACCCAGGCTTAGCTCCCCCCGCCCCCGGATTTTTTTTATCATAATACACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTAtt < 5:555030/136‑1 (MQ=255)
tCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGAc > 1:538158/1‑140 (MQ=255)
tCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGAc > 1:519685/1‑140 (MQ=255)
tCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGAc > 5:878722/1‑140 (MQ=255)
tCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACGCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGTCATAGTAGCCCTGTATTAAATAttt > 8:483561/1‑137 (MQ=255)
gCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGACtt > 1:1072480/1‑140 (MQ=255)
gCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGACtt > 1:1023462/1‑140 (MQ=255)
gCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGACTTTTTCACCg > 5:706787/1‑140 (MQ=255)
ggggCCTGCGACCACCGTTTTTTTTTATTTGCATAAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGACTTTTTCACCGATGCg < 5:1066680/137‑1 (MQ=255)
cAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGACTTTTTCACCGATGCGTCAAg > 1:348108/1‑140 (MQ=255)
cAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATGGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGACTTTTTCACCGATGCGTCaac > 6:118080/1‑139 (MQ=255)
cAGCGACCACCGCTTATTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCTATATTATTTTCATTGTTTGAAGCATATCGGGCATAGTAGCCATTTATTAAATATTGACATTTTCACAGATGAGTCaat > 2:257162/1‑139 (MQ=255)
ttttttttATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCggg < 3:790534/80‑1 (MQ=255)
ttttttCATTACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATTGTAGCCCTGTATTAAATATTGACTTTTTCACCGATGCGTCAAGAAAAGCGGCTGAAATTTTTa < 1:1000113/135‑1 (MQ=255)
ataaTTACCACGACTCCAGGGAAGAGCCGAATTCTGCAATATTATTGTCATTGTATGAAGGATATCGGGAATAGTAGCCCTGTATTAAATATTGACTTTTTCACCGATGCGTCAAGAAAAGCGTCTGAAATTTTTACGAt < 3:491433/137‑1 (MQ=255)
aacATTAACACGACTCCAGTGAAGAGCCGAATTCGGCAATATTAGTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGACTTTTTCACCGATGCGTCAAGAAAAGCGGCTGAAATTTTTACGAt < 4:1012975/138‑1 (MQ=255)
aTCATAAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGACTTTTTCACCGATGCGTCAAGAAAAGCGGCTGAAATTTTTACGAt < 2:440755/140‑1 (MQ=255)
cATGAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCACTGTTGTAAATATTGACTTTTTCACCGATGCGTCAAGATAAGCGGCTGAAATTTTTACGATCg > 6:472847/1‑140 (MQ=255)
aaCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGACTTTTTCACCGATGCGTCAAGAAAAGCGGCTGAAATTTTTACGATCGGGTa < 2:680636/140‑1 (MQ=255)
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TGTGGAATGTCCGGGTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGACTTTTTCACCGATGCGTCAAGAAAAGCGGCTGAAATTTTTACGATCGGGTA > NZ_CP022686/2460444‑2460719
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
