Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F13 I0 R1
|
203 |
11425.2 |
8793538 |
98.4% |
8652841 |
135.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
2,460,581 |
A→C |
23.5% |
intergenic (‑3/‑155) |
yhjY ← / → tag |
autotransporter outer membrane beta‑barrel domain‑containing protein/DNA‑3‑methyladenine glycosylase I |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 2,460,581 | 0 | A | C | 23.5%
| 229.4
/ 39.6
| 176 | intergenic (‑3/‑155) | yhjY/tag | autotransporter outer membrane beta‑barrel domain‑containing protein/DNA‑3‑methyladenine glycosylase I |
| Reads supporting (aligned to +/- strand): ref base A (100/32); new base C (2/42); total (102/74) |
| Fisher's exact test for biased strand distribution p-value = 7.03e-18 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 198 total aligned reads displayed.
TCTGTGGAATGTCCGGGTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGACTTTTTCACCGATGCGTCAAGAAAAGCGGCTGAAATTTTTACGATCGGGTA > NZ_CP022686/2460442‑2460719
|
tgtgGAATGTCCGGGTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAaca > 6:1081825/1‑140 (MQ=255)
tgtgGAATGTCCGGGTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAaca > 7:1007453/1‑140 (MQ=255)
tgtgGAATGTCCGGGTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAaca > 1:424376/1‑140 (MQ=255)
tgtgGAATGTCCGGGTTGCGTATCAAAGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAaca > 8:204276/1‑140 (MQ=255)
tgGAATGTCCGGGTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTaaaa > 3:690517/1‑136 (MQ=255)
tgGAATGTCCGGGTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAaca > 3:719514/1‑138 (MQ=255)
gAATGTCCGGGTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACg > 3:594369/1‑138 (MQ=255)
tGTCCGGGTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTcc > 5:71048/1‑140 (MQ=255)
ccGGGTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAgg > 5:950073/1‑140 (MQ=255)
ccGGGTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTAAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAgg > 5:840647/1‑140 (MQ=255)
ggggTTGCGTATCAATGTTATATTCTTGTTGCCTGGCTTATGCTGTTTTTATAAAAACGGAACTTATTACACCGCTCGCAAGCAGGTTTAGCTGCCAGCGACCACCGTTTTTTTTTATTATAATAAACACGACTCCAggg < 8:9405/139‑1 (MQ=255)
gggTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGa > 5:267981/1‑140 (MQ=255)
gggTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGa > 2:251423/1‑140 (MQ=255)
gggTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCGGTGTTGAGAAAAAAGGCACTTATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATTATCATTAACACGCCTCCAGGGa > 6:553795/1‑140 (MQ=255)
gTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCATAGCTGCCAGCGACCAACGCTATTTTTTATGATCATTAACACTACTCCAGGGa > 3:316707/1‑138 (MQ=255)
gCGTATCAACGATATTTTCGTGTTGCCAGGAGTAAGATGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGATTCCAGCGACCACCGCTTTTTTTTATGATCATAAACACGACTCCAGGGAAGAGc > 1:120614/1‑140 (MQ=255)
tATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGcc > 3:209560/1‑138 (MQ=255)
tATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGcc > 3:1113351/1‑138 (MQ=255)
cAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACTCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGGTTTTTTTTATGATCATTACCACGACTCCAGGGAAGAGCCGaa > 4:592636/1‑138 (MQ=255)
ctatatatGTTTGTGCCCCGGCGAACTCTGTGTTGACAAAAAAGCCACTGATACCCACGCTCCCACGCAGGCTATGCGGCCAGCGACCACCGATTTTTTTTATTATCATACCCACGACTCCAGGGAAGAGCCGAATTCgg < 2:921240/138‑1 (MQ=255)
ctaaatatTCTTGTTGCCCGGCGTAAGGGGTGTTTATAAAAACGCCACTGATACCCCCGCGCGCACCCCGGCTTCGCTGCCAGCCACCACCGCTTTTTTTTATGATCATTACCACGACTCCAGGGAAGAGCCGAATTc < 4:710789/134‑1 (MQ=255)
atatTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCa > 4:1097744/1‑138 (MQ=255)
ttgttgCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATattatt > 8:344291/1‑140 (MQ=255)
ttgttgCCAGGCGTAAGCTGTGTCGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATattatt > 2:1074411/1‑140 (MQ=255)
gttgCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTAgtgt > 5:1077805/1‑140 (MQ=255)
gttgCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACAACTCCAGGGAAGAGCCGAATTCGGCAATATAATTGt > 8:212958/1‑140 (MQ=255)
ttgCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTg > 3:252232/1‑138 (MQ=255)
ttgCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATAATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGta > 7:5658/1‑139 (MQ=255)
tgCCAGTCTTATGGTGGGTTGATAAAAAAGCCACTTATTACCCCGCTCGCAAGCTGGCTTTGCTGCCACCGACCCCCGTTTTTTTTTTTTATCATTACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCa < 7:831571/140‑1 (MQ=255)
tgCCAGGCGTATGCTGTGTTCATAAAACAGCCCCTTATTACCCCGCGCGCACGCAGGCTTCGCGGCCAGCGACCACCGTTTTTTTTTATCATCATAACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGt < 3:1035177/138‑1 (MQ=255)
gcccAGGCTTAAGGTTTGTTTATAAAAAAGGCACTTATAACCACGCTCTCACTCTGGCTTTGCGGCCATCTACCACCGCTTTTTTTTATGATAATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCa < 2:657033/138‑1 (MQ=255)
cAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCAt > 3:427132/1‑138 (MQ=255)
gTAAGTTGTGTTGATAAAAAAGCCACTTATTACCACGCTCGCACGCTGGCTTAGCTGCCAGCTACAACCGTTTTTTTTTATGAACTTAACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGa < 6:298565/140‑1 (MQ=255)
tgtgTTTATAAAAAAGCCACTTATAACCACGCTCGCACGCAGGCTTAGCTCCCAGCCACCCCCGTTTTTTTTTATTAACATAACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGata < 6:1023943/140‑1 (MQ=255)
ggttttGACAAAAACGCCACTGATTACCACGCTCGCAAGCAGGCTTAGCGGCCAGCTACCACCGCTTTTTTTTATGATCATAACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGa < 4:934221/134‑1 (MQ=255)
ggtgtTGATAAAAACGGCACTTATACCCACGCCCGCAAGCCGGCTTAGCGGCCAGCGACCACCGTTTTTTTTTATGATAATAAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGa < 4:410711/137‑1 (MQ=255)
ggtgtTGAGAAAAACGGCCCTGAATACCACGCGCGCAAGCAGGTTTCGCTGCCCGCCACCACCGGTTTTTTTTATGATAATTACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGata < 2:222315/139‑1 (MQ=255)
ggtgtGGAAAAACAAGCCACTGATACCCCCGCCCGCCCGCTGGATTAGCTCCCAGAGACCACCGTTTTTTTTTTTCACAATAACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGa < 4:123604/137‑1 (MQ=255)
tgtTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCCCCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATc > 8:446473/1‑140 (MQ=255)
tgtTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATc > 8:284492/1‑140 (MQ=255)
tgtTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATc > 6:173321/1‑140 (MQ=255)
tgtTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATc > 1:106844/1‑140 (MQ=255)
tgtTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATc > 1:351883/1‑140 (MQ=255)
tgtTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATc > 2:81477/1‑140 (MQ=255)
gtTGAGAAAAAAGGCACTGATTTCCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCg > 1:262759/1‑140 (MQ=255)
ttGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATc > 3:761570/1‑138 (MQ=255)
ttGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATc > 3:640202/1‑138 (MQ=255)
ttcaaaaaatGGCCTTGATTACCCCGCTCCCAAGAAGGCTTTGCGGCCACCGACAACCTGTTTTTTTTATTACCATTAACACGACTCCAGGGACGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCggg < 1:921566/136‑1 (MQ=255)
ttataaaaacGGCCCTGATACCCACGCTGCCACGCTGGCTTCGCGGCCAGCGACCCCCGGTTTTTTTTTTGATAATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCggg < 6:267981/136‑1 (MQ=255)
ttacaaaaaaGCCACTGATACCCACGCCGGCAAGATGGCACTGCGGCCCGCGACCAGCGGTTTTTTTTATTATCTTTCACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCggg < 6:195748/136‑1 (MQ=255)
tGATAAAAAAGGCACTGTTTACCCCGCGCGCCACCCGGCTTCGCGGCCAGCTACCACCGTTTTTTTTTTTGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCggg < 2:1064485/140‑1 (MQ=255)
agaAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGCCTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATAGGGCa > 5:1035068/1‑140 (MQ=255)
agaAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTATTTTTTATGCTCATTAACACGACTCCAGGGAAGAGCCGAGTTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCa > 6:792019/1‑140 (MQ=255)
aaaaaaGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTGTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCAta > 7:188441/1‑140 (MQ=255)
acaatgccACTTAGTAACACTCTCGCAATCCTGCTTGGATGCCAGCGACCCCCTCTTTTTTTTATTATAATAACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCAtag < 6:930245/133‑1 (MQ=255)
aaaaccgCACTAATAACCCCCCTCGCACGCAGGCTTCGCTGCCCGCCACCCCCGCTTTTTTTTATTATCATTACCCCGACTCCAGGGACGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCAt < 4:796474/132‑1 (MQ=255)
aaaaaGGCTCTTATTCCCCCGCGCGCACGCCGGATTCGCTGCCAGCGACCACCGCTTTTTTTTATTATCTTTCACACGACTCCAGTGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCAtag < 7:347471/140‑1 (MQ=255)
aaaGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCAtagtt > 6:983812/1‑139 (MQ=255)
aaaGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCAtagta > 2:350642/1‑140 (MQ=255)
aGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCAtagtc > 3:410711/1‑137 (MQ=255)
aGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCAtagta > 4:325798/1‑138 (MQ=255)
tccagtGATTCCCACCCTCCCAATCTGGCTTCGCTCCCATCGACCAACGATTTTTTTTATTAATATTACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCAtagtag < 3:239001/133‑1 (MQ=255)
ggCATTTATTCCCACGCCCGCAAGCAGGCTTTGCGGCCCGCGACCACCTTTTTTTTTTATGATAATTACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGcc < 5:462940/140‑1 (MQ=255)
ggCACTTTTTACCCCGCTCGCAAGATGGTTTACGGGACAGCTCCCCCCTTTTTTTTTTTTTATAATTACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCAtagtag < 3:94792/138‑1 (MQ=255)
ggCACTTATAACCCCCCCCGAAACCAGGCAAAGCCCCCCGCCACCACCGTTTTTTTTTATCAACATAACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGcc < 1:596217/140‑1 (MQ=255)
ggCACTTATAACCACGGCCCACAGCCGGCTGACCGGCCAGCGCCCCCCGGTTTTTTTTATCACCATAACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGcc < 7:87065/140‑1 (MQ=255)
gccACTGATACCAAGGCTCTCAACAAGGTTTAGCGGCCAGCGACCACCCCTTTTTTTTTTGATAATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGcc < 8:831061/138‑1 (MQ=255)
cgcccTGATCCCCCCGCTCGCACCCAGGCTTAGCTCCCAGCCACCACCGATTTTTTTTTTTATCATAAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGcc < 6:452756/136‑1 (MQ=255)
cgCACTGATTACCCCGCCCGAAAGCAGGATTAGCTGCCTGCCACCACCGCTTTTTTTTATTATAATAACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGcc < 1:475152/139‑1 (MQ=255)
cccACTTATAACCCCCCTCTCAAGCAGGGTTCGCCGCCACCGACCACCCTTTTTTTTTATGACCATAACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGcc < 7:446798/138‑1 (MQ=255)
ccacatGATAACCACGCTCCCAACCTGGCATACCTGCCCGCCCCCACCCCTTTTTTTTATTACCATAACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGcc < 5:100524/135‑1 (MQ=255)
gCACTGATTCCCACGCGCGCACGCTGGCTTAGCTTCCTGCGACCACCGGTTTTTTTTTTTATATTTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGccc < 8:865742/140‑1 (MQ=255)
cTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCTTTGTATGAAGGATATCGGGCATAGTAGcccg > 4:188294/1‑137 (MQ=255)
ataaccaccCTCCCACCCAGGCTTCGCTCCCACCGACCACCGCTTTTTTTTATGATAATAAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTa < 4:779010/135‑1 (MQ=255)
cACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAAGTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAata > 2:514558/1‑140 (MQ=255)
cGCTCCCAACCCGGCTTCGCGGCCAGCTACCACCGATTTTTTTAATCATAATAACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAata < 3:901140/138‑1 (MQ=255)
gCTCGCAAGCCGGCTTAGCTCCCTGCGACCACGTCTTTTTTTTATGATCTTTACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTg < 8:591741/140‑1 (MQ=255)
gCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCATTTTTTTATGATCATTAACACGACTACAGGGAAGAGCCGATTTCGGCAATAATATTGTCATTTTATGATGGATATCGGGCAAATTAGACCTGTATTAAATAttt > 2:613960/1‑139 (MQ=255)
tCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGAc > 5:305751/1‑140 (MQ=255)
tCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGAc > 5:917034/1‑140 (MQ=255)
tCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTAGGAAGGATTTCGGGCATAGTAGCCCTGTATTAAATATTGAc > 5:514434/1‑140 (MQ=255)
gCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCAGAGTAGCCCTGTATTAAATATTGACTTTTTCACCg > 6:906793/1‑140 (MQ=255)
ttAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGACTTTTTCACCg > 3:536140/1‑138 (MQ=255)
cAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGACTTTTTCACCGATGCGTCAAg > 2:449839/1‑140 (MQ=255)
cAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGACTTTTTCACCGATGCGTCAAg > 2:663676/1‑140 (MQ=255)
ttacaTCATAACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCTTTGTATGAAGGATATCGGGCATCGTAGCCCTGTATTAAATATTGACTTTTTCACCGATGCGGCAAGAAAAGCGGCTGAAAtttt < 4:38841/134‑1 (MQ=255)
tATGATCATACCCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGACTTTTTCACCGATGCGTCAAGAAAAGCGGCTGAAAtttt < 3:999527/138‑1 (MQ=255)
ttaTCTTTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGACTTTTTCACCGATGCGTCAAGAAAAGCGGCTGAAATTTTTACg < 8:933628/138‑1 (MQ=255)
tGATCATAAACACGACTCCAGGTAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGACTTTTTCACCGATGCGTCAAGAAAAGCGGCTGAAATTTTTACg < 1:103641/140‑1 (MQ=255)
gtaTCATAACCACCACTCCATGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTATCCCTGTATTAAATATTGACTTTTTCTCCGATGCGTCAAGAAAAGCGGCTGAAATTTTTACg < 8:134362/138‑1 (MQ=255)
taacatcacacGTCTCCAGGGCAGAGCCGAATTCGGCAATATTATTGTCATTGTAAGAAGGATATCGGGCCTAGTAGCCCTGTATTAAATATTGACTTTTTCACCGATGCGTCAAGAAAAGCGGCTGAAATTTTTACGAt < 8:122027/133‑1 (MQ=255)
ataataaaCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGACTTTTTCACCGATGCGTCAAGAAAAGCGGCTGAAATTTTTACGAt < 5:319694/134‑1 (MQ=255)
ataataaaCACGACTCCACGGAATAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGACTTTTTCACCGATGCGTCAAGAAAAGCGGCTGAAATTTTTACGAt < 6:134670/134‑1 (MQ=255)
ataaatAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGACTTTTTCACCGATGCGTCAAGAAAAGCGGCTGAAATTTTTACg < 3:812414/133‑1 (MQ=255)
ataaTTACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGACTTTTTCACCGATGCGTCAAGAAAAGCGGCTGAAATTTTTACg < 4:608209/135‑1 (MQ=255)
aTCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTCTGAAGGATATCGTGCATAGTAGCCCTGTATTAAATATTGACTTTTTCACCGATGCGTCAAGAAAAGCGGCTGAAATTTTTACg < 4:848241/138‑1 (MQ=255)
aTCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGACTTTTTCACCGATGCGTCAAGAAAAGCGGCTGAAATTTTTACg < 4:89592/138‑1 (MQ=255)
tCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGACTTTTTCACCGATGCGTCAAGAAAAGCGGCTGAAATTTTTACGATc < 6:475751/140‑1 (MQ=255)
ttACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGACTTTTTCACCGATGCGTCAAGAAAAGCGGCTGAAATTTTTACGATCggg < 2:366702/140‑1 (MQ=255)
aaCACGACTCCAGTGAAGAGCCGAATTCGGCAATATTATTGGCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGACTTTTTCACCGATGCGTCAAGAAAAGCGGCTGAAATTTTTACGATCGGGTa < 7:700423/140‑1 (MQ=255)
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TCTGTGGAATGTCCGGGTTGCGTATCAACGATATATTCTTGTTGCCAGGCGTAAGCTGTGTTGAGAAAAAAGGCACTGATTACCACGCTCGCAAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGTAGCCCTGTATTAAATATTGACTTTTTCACCGATGCGTCAAGAAAAGCGGCTGAAATTTTTACGATCGGGTA > NZ_CP022686/2460442‑2460719
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
