Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F2 I0 R1
|
122 |
5985.5 |
7364544 |
98.3% |
7239346 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
4,014,242 |
A→T |
16.2% |
intergenic (+88/‑256) |
bolA → / → tig |
transcriptional regulator BolA/trigger factor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 4,014,242 | 0 | A | T | 16.2%
| 181.7
/ 5.8
| 118 | intergenic (+88/‑256) | bolA/tig | transcriptional regulator BolA/trigger factor |
| Reads supporting (aligned to +/- strand): ref base A (48/48); new base T (11/7); total (63/55) |
| Fisher's exact test for biased strand distribution p-value = 4.48e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 119 total aligned reads displayed.
CACCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGA > NZ_CP022686/4014106‑4014380
|
cacCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTTTTTTGTATGGtttt > 7:272811/1‑140 (MQ=255)
cacCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGACTGCGGGCCGTTTTGTTTTGTCTGGAttt > 8:638725/1‑140 (MQ=255)
cacCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAAATGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTAATGAAAAACGGCCTGCGGGCCGTGTTGTTTTTTCTGGAatt > 1:834669/1‑140 (MQ=255)
acCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGAtttt > 1:685751/1‑140 (MQ=255)
cGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGAtttttg > 2:914918/1‑138 (MQ=255)
tCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGACGGCGCTTTTCCAGTATTTTGCTAAAGATTTTATTAAAAACGGCCTGCGGGCCGTTTTGTTTTTTGTTGAtttttg > 5:403070/1‑136 (MQ=255)
tttGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTTTGAAAAACGGCCTGCGGGCCGTGTTGTTTTGTCGGGTTTTTgcgg > 6:565203/1‑137 (MQ=255)
tctcCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGcc < 8:45692/140‑1 (MQ=255)
tctcCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGcc < 8:819066/140‑1 (MQ=255)
cctcctcCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGcc < 4:418741/139‑1 (MQ=255)
tcctccCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTTTTTTGTCTGGATTTTGCGCTTTTTTCCCa > 4:94623/1‑140 (MQ=255)
tcctccCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGcc < 5:818461/138‑1 (MQ=255)
tCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTGTGGATTTTGCGCGTTTTTGCCAGCATTcc > 6:149181/1‑137 (MQ=255)
tCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGGCTGGATTTTGCGCTTTTTGCCCAGCATTgaga > 4:376332/1‑140 (MQ=255)
tCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCGTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGa > 4:476446/1‑140 (MQ=255)
cGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACTGCCTGCGGGCCGTTTTGTTTTGTGTGTGTTTTGCGAGTTTTTGCCAGCATTCAGAc > 4:282416/1‑140 (MQ=255)
cGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTGTTGTTTTGTCTGGATTTTTCGCTTTTTGCCCAGCATTCAGAc > 8:187182/1‑140 (MQ=255)
tGGCGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTGTTGTTTTTTGGGGGTTTTGGGGGTTTTGCCCCGCGTTCAGACgg > 7:737323/1‑139 (MQ=255)
tGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTTTCTGGATTTTGAGGTTTTTGCCCAGCAATAAGACGa > 1:403932/1‑140 (MQ=255)
tGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTGTTGTTTTTTCTGGATTTTGAGCTTTTTTCCCAGCATTAAGACGa > 1:765320/1‑140 (MQ=255)
gAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGTTTTTGCGCTTTTTGCCCAGCATTAAGACGa > 5:896426/1‑138 (MQ=255)
gAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACGaaa > 4:41219/1‑140 (MQ=255)
gAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACGaaa > 7:538049/1‑140 (MQ=255)
gAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACGa > 6:278961/1‑138 (MQ=255)
gAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGAGGGCCGTTATTTATTGTCTGGGTTTTTCGGTTTTTTCCAATCATTAAGACCaaa > 3:573400/1‑140 (MQ=255)
ggAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTTTGTGGATTTTTGGGGTTTTGGCCAGCATTAATACGAAAATCGc > 3:111608/1‑140 (MQ=255)
ggAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGTATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATc > 6:248935/1‑138 (MQ=255)
ggAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGGCCAGCATTCAGCCGAAAATCGc > 2:490085/1‑140 (MQ=255)
ggAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGc > 2:48689/1‑140 (MQ=255)
ggAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTGTTGTTTTTTATGGATTTTGCGCGTTTTGCCCAGCAGTCAGACGAAAATCGc > 7:31431/1‑140 (MQ=255)
ggAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTGTTGTTTTGTCTGGATTTTGGGCGTTTTGCCCAGCATTGAGACGAAAATCGc > 1:340633/1‑140 (MQ=255)
ggAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGAGGGCCGTTTTTTTTTGTCTGGATTTTGCGATTTTTGACGATCATTCATACGAAAATAGc > 8:242365/1‑140 (MQ=255)
ggAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTACAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGGTTTGTAATTATTTATCTCTTTTTTGACAGCAATCAGAACAAAAtaaa > 1:74360/1‑137 (MQ=255)
gAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTGTGGATTTTGCGCTTTTTGCCCAGCATTAAGACGAAAATCGcc > 3:612533/1‑140 (MQ=255)
aaGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTGTTGTTTTGTGTGGATTTTGCGCTTTTTGCCCAGCCTTCAGCCGAAAATCGc > 5:200933/1‑138 (MQ=255)
aTCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTGTTGTTTTGTGTGGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCgggt > 7:413207/1‑139 (MQ=255)
tagcgTAAAAACGCATTTGCAACTGTCGTCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGaa < 7:160999/138‑1 (MQ=255)
tCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCCGCATTCAGACGAAAATCGCCCGGGaa > 2:197571/1‑140 (MQ=255)
cgcgTAAAAACGCATTTGCATCTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTTTCTGGTTTATGGGCTTTGTGGCCTGCAATCAGACGAAAATCGCCCGGGTAt > 3:361705/1‑140 (MQ=255)
cgcgTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTTTTTTGTGTGGTTTTTTAGCTTTTTGGCCAGCAATCAGCCGCAAATCGCCCgggg > 6:854750/1‑137 (MQ=255)
cgcgTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGGTTTGTATGGTTTTTGCGATTGTTGCACAGCATTCAGACGAAAATCGCCCGGGAAt > 7:126616/1‑140 (MQ=255)
cgcgTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTGTTGTTTTGTCTGGTTTTTTCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAAt > 4:131903/1‑140 (MQ=255)
cgTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTGTTTGGCCAGCATTCAGACGAAAATAGCCCGGGAAttt > 8:817528/1‑139 (MQ=255)
cgTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGGTTTGTTTTGTCTGGTTTTTTGGCTTTTTGGCCAGCATTCAGAGGAAAATAGCCCgggttatg > 1:153024/1‑135 (MQ=255)
aaaCGCATTTGCAACTGTCGGCGCTTTTCACTTATGTTGCTAAATTTTTTATGAAAAAGGGCCTGCGGGCCTTTTTGTTTTGTCTGTATTTTGCGCTTTTTGCCCAGATTTCCTACGAAAATCGCCCGTGAATTGTGaaa < 1:202631/140‑1 (MQ=255)
aaaCGCATTTGAATCTGTGGTGTCTTTTCATTTATGTTGCTTATTATTTTATTAAAAACGGCGGGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCCGACGAAAATCGCCCGGTATTTGTGa < 6:459208/138‑1 (MQ=255)
aCTGTGGGCTCTTTTCCAGAATTTTGCTAAATATTTTATGAAAAACGGCCTGCGGGCGGTTTTGTTTTGTCTGGTTTTTGCGCTTTTTGCCCAGCATTCATACTAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAg < 2:407104/140‑1 (MQ=255)
aCTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAg > 4:193230/1‑140 (MQ=255)
tGTCGGCGCTTTTCATGTTTGTTGCTAAATTTTTTATTAAAAACGGCCTCCGGGCCGTTTTTTTTTGTCTGGATTTTGCGCTTTTTGCCCAGAATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAgcg < 2:785497/140‑1 (MQ=255)
tCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTGTTGTTTTTTCTGGATTTTGCGCTTTTTTCCCAGCAATAAGACGAAAATCGCCCGGGAATTGTGAAAAAAAAAGCGACAgcgcg > 2:952983/1‑140 (MQ=255)
cGGCGCTTTTCCATTATGTTGCTAAATATTTTATTAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTTAAAAAATACGCGACAgcgcgc < 4:612533/140‑1 (MQ=255)
cGGCGCTTTACCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTTGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAgcgcgc < 8:725998/140‑1 (MQ=255)
tttttCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATaa < 7:369083/139‑1 (MQ=255)
cTTTTCCAGTATGTTGCTAAAGATTTTATGAAAACCGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGCCGAAAAGCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATaa < 4:332593/140‑1 (MQ=255)
attttCCAGTATGTTGCTAAAGATTTAATGAAAACCGGCCGGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGTAATTGTGAAAAAATACGCGACAGCGCGCAATaa < 3:645228/139‑1 (MQ=255)
ttttCCAGTATTTTGCAAAAGATTTAATCAAAACCGGCCGGCGGGCGGTTTTTTTTTGTCGGGATTTGGCGCTTTTTGCCCCGCATTCAGACTAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAAc < 4:155779/140‑1 (MQ=255)
tttATGTGGCTAAATATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGTTTTTGCGCTTTTTGCCCAGCATTCAGCCGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGtt < 6:896426/136‑1 (MQ=255)
gTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGAATTTGCGCTTTTTGCCCAGCATTCAGACGAAAATAGCCCGGGAATTGTGAAAAAATACGCGACACCGCGCAATAACCGTtctc > 2:738044/1‑140 (MQ=255)
gTTGATAATTATTTTATTAAAAAGTGCCTGGGGGCTGTTTTGTTTTTTCTGTATTTTGCGTTTTTTGCCCAGCATTCATACTAAATTCGCCCGGTATTTGTTAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGa < 6:403070/138‑1 (MQ=255)
ttGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTGTTGTTTTGTGTGGATTTTTCGCTTTTTGGCCAGCATTAAGAAGAAAATCGCCCGGGAATTGTGAAAAAATAAGCGACAGCGCGCAATAACCGTTATCGCCTc > 2:624154/1‑140 (MQ=255)
cTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCa > 6:751904/1‑138 (MQ=255)
cTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCAGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGGTCTCGACTCATa > 2:389028/1‑140 (MQ=255)
ttttATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGa < 2:685751/140‑1 (MQ=255)
tttATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGCCGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGCCTCATAAAAGTGAt > 8:494957/1‑140 (MQ=255)
tattataaaCGGCAGGGGGGCTGTTTTTTTTTGTTTGTATTTTTCTTTTTTTGACAAGAATACAGACTAATATCGCCCGGTATTTGTGAAAAAATACGCGACATCGCGCAATAACCGTTCTCGACTCATAAAAGTGAt < 6:117014/132‑1 (MQ=255)
tagtaaaacCGGCCTGCGGGGCGTGTTGTTTTTTGTGGATTTGGCGGTTTTTGCCCCTCATACCTTCGAAAATCCCTCGTCATTTGTAAAAAAAACCGCGACAGCGCGCAATAACCGTTCTCGACTCCTAAAAGTGAt < 6:552088/134‑1 (MQ=255)
tATTAAAACCGGCCTGCGGGCGGTTTTGTTTTGTCTGTTTTTTGCTATTTTTGCCCATAATTAAGTCTAAAATCGCCCGGGAATTGTTAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGc < 7:772045/140‑1 (MQ=255)
tATTAAAAACGGCTTGCGGGCCGTTTTTTTTTGTCTGTATTTTGCGCTTTTTGCCCAGCATTCAGACTAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGc < 4:784142/140‑1 (MQ=255)
tATTAAAAACGGCCTGCGGGCCTTTTTGTTTTGTCTTTATTTTGGGCTTTTGGCCCAGCTTTAAGCCGACAATCGCGCGGGAATTGTGAAAAAATACGAGACAGCTCGCAATAACCTTTCTCGACTCATAAAAGTGAt < 6:417607/138‑1 (MQ=255)
tATGAAAAACGGCCTGGGGGCCGTTTTGTTTTGTCTGTATTTTGCGCTTTTGGCCCAGCATTCAGACTAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGc < 8:825411/140‑1 (MQ=255)
tATGAAAAACGGCCTGCGGGCCGTTTTTTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTTAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGc < 3:731224/140‑1 (MQ=255)
tATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGTTTTTGCGCTTTTTGCCCCGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGAttc > 7:280652/1‑138 (MQ=255)
tATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGc < 4:104076/140‑1 (MQ=255)
tATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGc < 2:169133/140‑1 (MQ=255)
tATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGc > 7:276642/1‑140 (MQ=255)
tATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGCAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGc < 8:603035/140‑1 (MQ=255)
tATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGAATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGc < 3:579117/140‑1 (MQ=255)
tATGAAAAACGGCCGGCGGGCGGTTTTTTTTTGTCTGTATTTTGCTGTTTTTGCCCACCATTCAGAATAAAATCGCCGGTTAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGAt < 6:870038/138‑1 (MQ=255)
tATCAAAAACGGCGTGCGGGCCTTTTTGTTTTGTCTTTATTTTGCTCTTTTTGCCCAGAATTATGACGAAATTCGCCCGGTAATTGTGAAAAAATCCGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGc < 3:738394/140‑1 (MQ=255)
tcaaaacCGGCCTGCGGGCCGTTTTGTTTTGTTTTGTTTTTGCGCTTTTTGCCCAGCTTTCAGACGAAAATCGCCCGGTAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGc < 6:373066/136‑1 (MQ=255)
tGAAAAACGGCCTGCGGGCCGTTTTTTTTTGTATGGTTTTTGCGATTTTTTCCCAGCGTTCAGACGAAAATCGCACGGGTATTGTTAAAAAATTCTCGTCAGCGCGCAATAACCTGTATCGCATCATAAAAGTGATGc > 6:665069/1‑138 (MQ=255)
tGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGTTTTTGCGCTTTTTGCCCAGCATTGAGGCGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGGTGTCGACTCATAAAATTGATGc > 5:714155/1‑138 (MQ=255)
gCCGGCGGGCGGTTTTGTTGTGTCTGTTCTTGTCGGTTTTTGCCCCGCATTCAGACGCAAATCGCCCGTGAATTGTGAAAAAATCCGCGACAGCGCGCAATAACCGGTCTCGACTCATAAAAGTGATGCCGCTATAAt < 6:229062/138‑1 (MQ=255)
ccTGGGGGCGGTTTTGTTTTGTCTTGATTTGGCTGTTTTTGCCCATCATTCAGACTAAATTCGCCCGGGAATTTTTAAAAAATCCGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGcc < 4:202066/140‑1 (MQ=255)
ccTCCGGGCCGTTTTGTTTTGTCTGGATTTTGCCCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTCAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCGGCTATAATGcc < 1:534934/140‑1 (MQ=255)
gtGCGGGCCGTTTTGTTTTGTCTGTATTTTGCGCTTTTTGCCCTGCATTCATACTAAAATCGCCCGGGAATTGTTAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCcg < 2:104946/139‑1 (MQ=255)
cTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGTAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGc < 6:49622/138‑1 (MQ=255)
gCGGGCCGTTTTTTTTTGTCTTTATTTTGGGGTTTTTTCCCCGAATTAAGACTAAAATCGCCCGGTAATTTTTAAAAAAAACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCTCTATAATGCcg < 5:845476/138‑1 (MQ=255)
gCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCATACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCcg < 5:226839/138‑1 (MQ=255)
gtgCCGTTTTGTTTTGTCTTTATTTTGCGTCTTTTGACCAGCTTTCAGACGAAAATCGCCCGGGATTTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTc < 8:78074/138‑1 (MQ=255)
ggctttttttttttgTCTGTTTTTTGCGTTTTTTGCCCATCATTAACACTAAAATCGCCCGGTATTTGTTAAAAAATCCGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTcc < 1:624154/135‑1 (MQ=255)
ggCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTTAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTcc < 1:268718/140‑1 (MQ=255)
ggCCGTTTTGTTTTGGCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTTAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTcc < 1:201442/140‑1 (MQ=255)
tgttgttttgtCTGGATTTTGCGCTTTTTGCCCAGCATTAAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCCTTCTCGACTCATAAAATTGATTCCGCTATAATGCCGCGTACGAttt > 4:269623/3‑140 (MQ=255)
ttttttttgtCTGGATTTTGAGCTTTTTTCCCAGCATTGAGACGAAAATCGCCCGGGAATTGTGAAAAAAAACGCGACAGCGCGCAATACACGTACTCGACTCATAAAAGAGATGCCGCGAAAATTCCGCGTGCTAtt > 6:788789/1‑138 (MQ=255)
tgttttgtCTGGATTTTGCGCTTTTTGCCCACCATTCAGACGAAAATCGCCCGGTATTTGTTAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTg < 5:392312/138‑1 (MQ=255)
tgttttgtCTGGATTAGGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGTATTTGTGAAAAATTACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGaa < 4:648020/140‑1 (MQ=255)
tgttttgtATGTTTTTTGCGTTTTTTGCCCACAATACAGACTAAAATCCCCCGGTAATTGTCAAAAAATCCGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTg < 5:173832/138‑1 (MQ=255)
tCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAATAAAAACGCGACAGCGCGCATTAACCGTTCTCGACACATAAAAGTGATGCCGCTATAATGCCGCGTCCTAATTGAATGCTTTc > 1:306631/1‑140 (MQ=255)
tCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTc > 8:419881/1‑140 (MQ=255)
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CACCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATCGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGA > NZ_CP022686/4014106‑4014380
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
