Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A28 F35 I0 R1
|
174 |
9808.2 |
8488800 |
98.4% |
8352979 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,640,925 |
A→C |
12.7% |
R7S (AGA→AGC) |
ygfM → |
molybdopterin‑dependent oxidoreductase FAD‑binding subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,640,925 | 0 | A | C | 12.7%
| 195.3
/ 4.2
| 118 | R7S (AGA→AGC) | ygfM | molybdopterin‑dependent oxidoreductase FAD‑binding subunit |
| Reads supporting (aligned to +/- strand): ref base A (53/47); new base C (5/13); total (58/60) |
| Fisher's exact test for biased strand distribution p-value = 7.18e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 125 total aligned reads displayed.
ATTCCATTTATGCGCAAGCCAGAAAAGCCGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCAGGATCTGGAG > NZ_CP022686/1640787‑1641063
|
aTTCCATTTATGCGCAAGCCAGAAAAGCCGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGAc > 6:356545/1‑140 (MQ=255)
cATTTATGCGAAAGCCAGAAAAGCCGCGGCCATTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCCCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGCCGATGATTGAACAATTTTTCAGACCCGa < 6:348210/140‑1 (MQ=255)
aaTTTATGCGCAAGCAAGAAAAGCCGCTGCCAGTATGTGGCGGCGGAGGGATGCGCTGGAATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGCAAAGACGATGATTGAACAATTTTTCAGCCCCGa < 7:937881/139‑1 (MQ=255)
aTGCGCATCCCAGAAATGCCGCTGCCATTTTGTGGCGTCGTATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGTAAATTAAGGAAAGACTATGATTTAACAATTTTTCAGACCCGActc < 2:855977/138‑1 (MQ=255)
gcgcAAGCCAGAAAAGCCGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTc > 8:832105/1‑140 (MQ=255)
cAAGCCAGAAAAGCCGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATAGAACAATTTTTCAGACCCGACTCTGTCGaa > 7:412973/1‑140 (MQ=255)
cAAGCCAGAAAAGCCGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGAGGAGTGAACAATTTTTCAGACCCGACTCTGTCGaa > 4:386330/1‑140 (MQ=255)
agcaataaaaGCCGCTGCAAGTATGTGGCGTCGGATGGATGCGCTGGAATAAATAACAGCTCCCATCTTCTTTCAGAGAAGAGGGTAAATTAAGGAAAGACGATGATTTAACAATTTTTCAGACCCGACTCTGTCGAACa < 5:667077/134‑1 (MQ=255)
taaacGCCGCTTCCAGTTTGTGGCGTCGGATGGTTGCGCTGGAATAAATAACTGCTCCCTTATTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTTAACAATTTTTCAGACCCGACTCTGTCGAACAAgcgc < 7:433835/139‑1 (MQ=255)
taaaaGCCGCTGCAAGTATGTGGCGTGGTATGGATGCGCTGGCATAAATAACCGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGCCCCGACTCTGTCGAACAAgcgc < 4:945609/139‑1 (MQ=255)
ccGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGCCCCGACTCTGTCGAACAAGCGCTGGCAc > 4:789800/1‑140 (MQ=255)
ccGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGa > 1:853712/1‑138 (MQ=255)
ccGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAAc > 5:194742/1‑140 (MQ=255)
gCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGagc > 2:1011096/1‑136 (MQ=255)
gCCAGTATGTGGCGTGGTATGGTTGCGTTGGCATAAATAACAGCTCCCCTATTCTTTCATAGACGTGGGGAAATTAAGGAAAGACGATGATTGAACATTTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAg < 8:726852/140‑1 (MQ=255)
gCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATATCAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGATCAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAg > 6:310744/1‑140 (MQ=255)
gCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCGGGAACTGAAg > 4:836141/1‑140 (MQ=255)
gCCAGGATGTGGCGTCGGATGGATGCGATGGCATAAATAACAGCTCCCATCTTCTTTCTGAGCAGAGGGGAAATAAAGGAAAGCCGATGATTGAACGATTTTTCAGACACGACTAAGTCGAACAAGCGCTGGCACTGacg > 6:310747/1‑138 (MQ=255)
agagaccggCGTCGGATGGATGCGCGGGAATAAATAACAGCCCCCCTATTCTTTCAGATAAGAGGGTAAATTAAGTAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAgcgc < 6:120167/133‑1 (MQ=255)
aGTATGGGGCGGGGTATGTATGCGCGGTAATAAATAACAGCACCCCTATTCTTAAAGATAAGTGGGTAAATAAAGGAAACACGACGTTTTAAAAATTTTACACACCCGACTCTGGCGAACAAGCGCTGGAACTGAAgcgc < 4:530428/140‑1 (MQ=255)
tttgtgGAGTCGTATTGATGGGCTGGCATAAATAAAAGCTCCCTTCTTATTTAATATAAGAGGTGAAATTAAGGAAATACTTTTATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGcgccg < 8:199108/138‑1 (MQ=255)
tATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATGTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGcgccg > 4:738888/1‑140 (MQ=255)
tgGGGTCGGATGGATGCGATGGAATAAAAAACAGCCCCCCTCTTCTTTACTATAAGAGGGTAAATAAAGTAAAGACGATTATTCAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTAc < 7:267528/140‑1 (MQ=255)
tgGCGTCGGATGTAGGCGCTGGCATAAATAACCGCCCCCCTCTTCTTTCCCAGAAGGGGGGAAATTACGGAAAGCCGATGATTGAACAATTTTTCAGCCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTAc < 4:563406/140‑1 (MQ=255)
tgGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTATGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTAc > 6:118983/1‑140 (MQ=255)
tgGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTAAGACCCGAATCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTAc > 6:788588/1‑140 (MQ=255)
gggggTCGGATGGTTGCGCTGGCATAAATAACAGACCCCCTCTTATTTCAGTGAAGAGGTGAAATTAAGGAATGACTATGATTTAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTAc < 8:960703/136‑1 (MQ=255)
gggCGTGGGATGGAGGCGCTGGCATAAATAAAAGCTCCCCTTTTATTTCCGAGAAGAGGGGAAATAAAGCAACTACTCTGATTTAACAATTTTTCACACCCGCCTCTGGCGAACAAGCGCTGGAACTGACGCGCCGCTAc < 5:858017/139‑1 (MQ=255)
gCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTAc > 1:203225/1‑138 (MQ=255)
gCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGATGGAACTGAAGCGCCGCTACCa > 6:372545/1‑140 (MQ=255)
gTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGCAGCGCCGCTcccc > 2:153681/1‑137 (MQ=255)
gTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTAccc > 2:576858/1‑137 (MQ=255)
cGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGTAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGAt > 8:379190/1‑140 (MQ=255)
ggatggatGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATg > 3:699334/1‑140 (MQ=255)
gatggatgCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGAt > 1:13222/1‑138 (MQ=255)
atgCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGTGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTAGAACAAGCGCTGGAACTGAATCGCCGCTACCAGGATGAAGCCg > 4:730975/1‑140 (MQ=255)
gcgcTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGCCCCGCCTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCg > 1:839580/1‑138 (MQ=255)
caggCATAAAAAACAGCTCCCCTCTTCTTTAAGAGAAGAGTGGAAAATAAGGAAAGACTCTGATTGACCAATTTTTCAGACCCGACACAGTCGCACACGCGCAGTCCCTGAAGCGCAGCTAACAGGATGCAGCCTTCTgg > 8:966918/3‑140 (MQ=255)
cTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGTATTTAAGGAAATACGATGCTTGCACAATTTTTCAGACCCGAATCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTgg > 8:675376/1‑140 (MQ=255)
aaaaaCAGCACCCCTCTTCTTTCAGATATGCGGGTAAATTAAGTAAAGCCGATGATTCAAAAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCgg < 3:912143/137‑1 (MQ=255)
aacccgCTCCCCTCTTCTTTCCGCGCCGCGGGGAAATCACGGAAAGCCGATGATTGAACAATTTTTCCCCCCCGACTCTGGCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCgggg < 6:316112/135‑1 (MQ=255)
aaaCAGACCCCCTCTTCTTTCCTATACCTGGTTAAATAACGCAAACCCGATGATTTAACAATTTTTCCGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCgggg < 7:212182/139‑1 (MQ=255)
cAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACACTTTTTCAGACCCGACGCTGTCGAACAAGCGCTGGAACTGAAGCGACGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGgcc > 5:58294/1‑139 (MQ=255)
gCTCCCCTCTTCTTTCAGATAAGAGGGTAAATTAAGGAAAGACGATTATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGgca < 2:853712/138‑1 (MQ=255)
gCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGgcc > 1:1097205/1‑137 (MQ=255)
cccccccTCTACTTTCCTATAAGAGGGGAAATTACGTAACGCCGATGATTGAACAATTTTTCACACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGgcagc < 7:325244/137‑1 (MQ=255)
cccTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAAc > 3:558575/1‑140 (MQ=255)
cccTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGG‑AGCaaaaa > 6:908028/1‑138 (MQ=255)
ccacttcttTAAGAGAAGAGGGTAAATTAAGGAAAGACGATGATGGAAAAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACt < 6:131162/137‑1 (MQ=255)
ccTCTTCTTTCAGATATGAGGGGATATTAAGGAAAGACGATTATTTAACAATTTTTCAGCCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCaaa < 1:261482/138‑1 (MQ=255)
ccTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTCCCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCaaa > 2:172573/1‑138 (MQ=255)
ccTCTTATTCCACATAAGAGGGTAAATTAACTAACCACGATGATTAAACAATTTTTCACCCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACt < 3:942498/140‑1 (MQ=255)
ccTCTGCTTTCACAGAATAGGGGAAATTAAGCAAAGACTCTGATTGAACAATTTTTCACACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTTGCCGGGGGCAGCaaa < 1:620835/138‑1 (MQ=255)
ccTATTCTTTCATCTAAGTGGGGAAATTATGGAAACACTAGCATTGAAAATTTTTTCAGACCCGACTCTTTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCaaa < 1:822948/138‑1 (MQ=255)
ccTATTCTTACAGAGAAGTGGGTAAATTAAGGAAAGACTTTGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACt < 8:856278/140‑1 (MQ=255)
ctctTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAAc > 1:68145/1‑138 (MQ=255)
ctctTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAAc > 1:925518/1‑138 (MQ=255)
ctctTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTAAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCTGCAAACTc > 5:548091/1‑140 (MQ=255)
attcttTCATATAATTGGGTAAATTAAGCAAAGACTATGATTCAACAATTTTTAAGCCCCGACTCTGTAGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCaa < 3:862271/139‑1 (MQ=255)
ttcttTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGAACCGACTCTGTCGAACAAGCGCTGGAACTCAATCGCCGCTACAAGGATGAAGCCGTCTGGTTCGCCTGGGGCAGCAAACTCAAc > 7:1008918/1‑140 (MQ=255)
tttttCATAGAAGTGGGTAATTTATGTAAAGACGATGATTTAAAATTTTTTCAGACCCGACTCTGTCGAACAAGCGGTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACg < 3:412020/138‑1 (MQ=255)
tcattCAGACAATAGGGTAAATTACGTAACTACGATGATTGAACAATTTTTCAGCCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACg < 3:752376/137‑1 (MQ=255)
cttTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGGCTGGTTCGCCGGGGGCAGCAAACTCAACGc > 7:842322/1‑140 (MQ=255)
tCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTac > 6:1001757/1‑140 (MQ=255)
tCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTac > 5:151186/1‑140 (MQ=255)
acAGAGAAGAGGGTAAATTAAGCAAACACGATGATTAAACAATTTTTCACCCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCt < 1:905121/137‑1 (MQ=255)
catacaagaGGGGAAATTACGGAAAGCCGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTa < 2:138299/133‑1 (MQ=255)
cgagaTGAGGGTATATTATTGAAAGAGGTTTTTTGAACATTTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTacac < 8:489762/139‑1 (MQ=255)
agagAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAgc > 2:160884/1‑69 (MQ=255)
agagAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAgc < 1:160884/69‑1 (MQ=255)
agagAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTacac > 4:135000/1‑140 (MQ=255)
agagAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTac > 1:935992/1‑138 (MQ=255)
agagAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTac > 1:719763/1‑138 (MQ=255)
gaagaGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCaa > 8:605971/1‑140 (MQ=255)
gagGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAAccc > 6:827401/1‑140 (MQ=255)
cgtggAAATAAAGCAAAGACCATAATAGACAAATTATTCATACCCGACTCTGTCGAAAAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCg < 8:1017670/137‑1 (MQ=255)
ggtaaaTTAAGTAAAGACTATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTa < 4:595504/137‑1 (MQ=255)
gtaaaTTAAGGAAAGACGATTATTTAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGt < 2:203225/136‑1 (MQ=255)
aaaTTAAGGAAAGACGATGATTGAACAATTTTTCAGCCCCGCCTCTGTCGATCAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACGCACCGCTACACCAACCCGTACCg > 8:807493/1‑140 (MQ=255)
aTTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAATCGCAACGCTACACCACCCCGTACCGAt > 7:65380/1‑140 (MQ=255)
tAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACAAACCCGTACCGAt > 2:541898/1‑138 (MQ=255)
aatgAAACACGATGATTCATAAATTTTTCAGACCCGACTCTGTCGAACACGCGCTGGAACTGCCGCGCCGCTACCAGGATGAAGCCGTCTGGTGCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATaaa < 3:474656/137‑1 (MQ=255)
aaaGACGTTGTTTGAAAAATTTTTCTGACCCGACTCTGTCGAACAAGCGCTGGAACGTAAGCGCCGCTACCAGGATGAAGCCGGCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGa < 6:82124/140‑1 (MQ=255)
aCGATGATTGAACAATTTTTCAGCCCCTACTCTGTCGAACAAGAGCTGGAACTGAAGCGCCGCTAACAGGATGAAGGCGTCTGGTTCGCCGGGGGCAGCAAAATCAACGCTACACCAACCAGTTCAGCTAAAAAGCTTGc > 8:501386/1‑140 (MQ=255)
tatgttTCAACAATTTTTCAGCCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGc < 1:480764/137‑1 (MQ=255)
tatgatTGATAATTTTTTCAGACCCGACTCTGTCTTACAAGGGCTGGAACTGTCGCTCAGATACCAGGATTAAGCCGTGTGGTTGGCAGGTGGCAGCTAAATAAACGCTACACCAACCCGTACAGATATAATGATTGcga < 8:740990/139‑3 (MQ=255)
gatTGAACAATTTTTCAGCCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCAt > 2:629238/1‑138 (MQ=255)
aCATTTTTTCTTACCCGACTCTGTAGAACAAGAGCTGGAACTGAAGCGCCGCTTCCAGGAGGAAGCCGGCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCTACCCGTACCGATAAAAAGATTGCCATTTCCTTGc < 6:505298/140‑1 (MQ=255)
cattttgtCATACCCGACTCTGGCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTg < 2:865545/135‑1 (MQ=255)
cAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTg > 1:800490/1‑138 (MQ=255)
cAATTTTTATGACCAGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCTTACCGATAAAAAGATTGCCATTTCCTTGCa < 8:213457/140‑1 (MQ=255)
atttttttGAGACCCGACTCTGTCGAACAAGCGCTGCACCTGAAGCGCCGCTACCAGGTTGAAGCCGTCTGGTTCGCCTGTGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTg < 1:327377/135‑1 (MQ=255)
aaaTTTTTCATACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTg < 1:445144/137‑1 (MQ=255)
aaaTTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTg < 1:555480/137‑1 (MQ=255)
aaaTTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTg < 2:56178/137‑1 (MQ=255)
aaaTTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCa < 5:1001757/139‑1 (MQ=255)
tttttCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCAGGa > 6:310668/1‑140 (MQ=255)
tttCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCAGGATc < 4:558575/140‑1 (MQ=255)
caCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCAGGATCTGGAg < 4:1059430/139‑1 (MQ=255)
caCCCGACTCTGTCGAACAAGCGATGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCAGGATCTGGAg < 4:353209/139‑1 (MQ=255)
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ATTCCATTTATGCGCAAGCCAGAAAAGCCGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCAGGATCTGGAG > NZ_CP022686/1640787‑1641063
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
