Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A30 F36 I0 R1
|
275 |
10897.2 |
10515506 |
98.4% |
10347257 |
135.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,640,925 |
A→C |
11.6% |
R7S (AGA→AGC) |
ygfM → |
molybdopterin‑dependent oxidoreductase FAD‑binding subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,640,925 | 0 | A | C | 11.6%
| 315.6
/ 2.8
| 173 | R7S (AGA→AGC) | ygfM | molybdopterin‑dependent oxidoreductase FAD‑binding subunit |
| Reads supporting (aligned to +/- strand): ref base A (88/59); new base C (3/23); total (91/82) |
| Fisher's exact test for biased strand distribution p-value = 3.56e-06 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 178 total aligned reads displayed.
TCCATTTATGCGCAAGCCAGAAAAGCCGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCAGGATCTGGAG > NZ_CP022686/1640789‑1641063
|
tCCATTTATGCGCAAGCCAGAAAAGCCGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGAc > 1:1131523/1‑138 (MQ=255)
ccATTTATGCGCAAGCCAGAAAAGCCGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCg > 5:569922/1‑140 (MQ=255)
tGCGCAAGCCAGAACAGCCGGTCCCAGTATGGGGCGTCGGTTGGATGCGGTGGAATAAATAACAGCTCCCCTCTTCTTTCAGATAAGAGGGGAAATTAAGGAAAGACGATGATTGACCAATTTTTCAGACCCGACTCTGt < 6:394774/140‑1 (MQ=255)
cAAGCCAGAAAAGCCGCTGCCAGTATGTGGCGTCGGATGGTTGCGCTGGCTTAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGTGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGCCTCTGTCgca > 6:1054296/1‑138 (MQ=255)
aGCCAGAACAGCCGCTGCCAGTATGGGGGGTGGGATGTCTGCGCTGGCATAATTAACCGCTCCCCTCGGATTTCAGTGAAGCGGGGAAATTACGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGaa < 2:58931/138‑1 (MQ=255)
aGCCAGAAAAGCCGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGaa > 3:642299/1‑138 (MQ=255)
gCCAGAAAAGCCGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTGTTTCAGAGAAGAGGGGAAATTAAGGAAAGACCATGATTGAACAAAATTTAAGACCCGACTCTGACGAACaa > 5:560311/1‑140 (MQ=255)
gCCAGAAAAGCCGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACaa > 7:1241010/1‑140 (MQ=255)
aaGCCGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCt > 1:722752/1‑138 (MQ=255)
gCCGCTGCCAGTTTGTGGCGTCGGTTGTATGCTCTGTAATAAATAACAGCCCCCCTCTTCTTTAATAGAAGTGGGTAATTTAAGGAAAGACTATTTTTGAAAATTTTTTCAGACCCGACTCTGTCGAACAAGCGCTgg < 2:670646/138‑1 (MQ=255)
ccGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAgcgc > 5:1160360/1‑134 (MQ=255)
ccGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAAc > 8:670447/1‑140 (MQ=255)
ccGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAAc > 6:410717/1‑140 (MQ=255)
gCCATTTTGTGGCGTCGTTTGGAGGCGCTGGCATAAATAACCGCTCCCCTCTTATTTCAGATAAGCGGGTAAATAAAGTAAAGACGATTATTCAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGa < 4:432458/138‑1 (MQ=255)
gCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGATCAATTTTTAAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAg > 5:202331/1‑140 (MQ=255)
ttATGTGGCGTGGGATGGATGCGCTGGAATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGTAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAgcg < 4:613002/137‑1 (MQ=255)
tATGGGGCGGCGGTGGGATGCGCGGGAATAAATAACCCAGCCCCGATTATTTCAGACAAGTGGGTAAATAATTGAAACACGATGATTTAAAAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGACCTGAAgcgc < 3:1219279/138‑1 (MQ=255)
gtgGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGcgccgc > 3:888743/1‑138 (MQ=255)
tgggtgcGGTTGGATCCGCTGGCATAAAAAACAGCTCCCAGCTTCTTTCAGAGAAGTGGGGAAATTAAGGAAAGACTATGATTGAAAAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTAc < 8:502423/134‑1 (MQ=255)
tgGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTAc > 7:1015472/1‑140 (MQ=255)
gggCGTCGGATGGATGCGCTGGAATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCt < 4:967587/137‑1 (MQ=255)
gCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGATGGGAAATTAAGGAACGACGATGATTGAACAATTTTTCTGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTAccc > 7:1205400/1‑139 (MQ=255)
gCGTCGGATGGATGAGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTAc > 4:590710/1‑138 (MQ=255)
gTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAATAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTAAGACCCGACTCTGTCGAACAAGCGCGGGAACTGAAGCGCCGCTACCa > 1:339279/1‑138 (MQ=255)
gTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTTGAACTGAAGCGCCGCTACCa > 1:445045/1‑138 (MQ=255)
gTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCa > 4:1166365/1‑138 (MQ=255)
tCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGa > 6:149331/1‑140 (MQ=255)
cGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACCAGCGCTGGAACTGAAGCGCCGCTACCAGGAt > 8:882380/1‑140 (MQ=255)
cGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGAt > 7:774449/1‑140 (MQ=255)
gatggatgCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACTATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGTAACTGAAGCGCCGCTACCAGGAt > 1:1234816/1‑138 (MQ=255)
ctggatgGGGCGGCATAAATACCCGCCCCCCTCTTCTTACCTATAATAGGGGAAATAAAGTAACGCCGATGATTTAAAAATTTTACCCCCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGagg < 4:531570/137‑3 (MQ=255)
gatgCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGACCTGAATCGCCGCTACCAGGATGAAGcc > 8:384587/1‑140 (MQ=255)
cgcTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGt > 2:494938/1‑138 (MQ=255)
cTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTgg > 5:1281022/1‑140 (MQ=255)
cTGGCATAAATAACAGCTCCCCTCTTCTTACAGAGAAGAGGGGAAATTAAGGAAAGACGAGGATTGAACAAATTTTCAGACCCGACTCTGGCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTgg > 6:812285/1‑140 (MQ=255)
ggCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTgg > 1:1063254/1‑138 (MQ=255)
ggCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTgg > 3:859661/1‑138 (MQ=255)
aaattaaAAGATCCCCTCTTCTTTCAGAGAATTGGGTAAATAAAGTAAATAGCTTTTTTGAAGAATTTTTAAGACCCGACTCTGTCGAACAAGCGCTGGACCTGAAGCGCCGCTACCAGTATGAAGCCGTCTGGTTCg < 2:1092472/134‑1 (MQ=255)
aaaCACCTCCCCGCTTCTTTCATCTACGAGGGTAAATAAAGGAAAGCCTATTATTGACCAATTTTTCCGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCgggg < 5:382181/139‑1 (MQ=255)
aCAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCgggg > 4:1061312/1‑138 (MQ=255)
cAGCTCCCCTCTTCTTTCAGAGAAGAGGGGTAATTAAGGAAAGACGATGATTGAACATTTTTTCCGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGGCTGGTTCGCCGGGGgcc > 8:293267/1‑139 (MQ=255)
cAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGgcc > 6:888749/1‑139 (MQ=255)
cAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGgca > 6:389283/1‑140 (MQ=255)
cAGCTCCCCTCATCTTTCAGAGAAGAGGGGAAATTAAGGAAAGAAGATGATTGAACAATTTTTAAGACCCGACTCTGTAGAACAAGCGGAGGAACTGAAGCGCCGCTACCAGGATGAGGCCGTCTGGTTCGCCGGGGgca > 8:795983/1‑140 (MQ=255)
gccccccTCATCTTTCAGCTACCTGGGTAAATTACGGAAAGCCGATGATTCACCAATTTTACAGCCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGgcagc < 8:1004877/137‑1 (MQ=255)
gCTCCCCTATTTTTTCCTTGATGAGGGTAATTTATGCAACGCCGATGATTGACCATTTTTTCATACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGgcagc < 7:401263/140‑1 (MQ=255)
ccaccccTCTTCTTGAAGAGACGAGGGTAATTTAAGCAAAGACCATTATTGAACAATTTTTCACACCCGACGCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGgca < 4:665130/135‑1 (MQ=255)
ccccccTCTTCTTTAAGAGAAGTGGGGAAATTAAGGAAAGACTATTATTTAACAATTTTTCCCACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGgcagca < 8:423398/138‑1 (MQ=255)
cTCCCCTCTTCTTTCAGAGAAGAGGGTAAATTAAGGAAAGACGATTATTGAACAATTTTTCAGCCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGgcagca < 8:1128380/140‑1 (MQ=255)
cccTCTTCTTTCAGATAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGCACAAGCGCTGGAGATGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCTCCGGGGGCAGCAAAc > 7:954007/1‑140 (MQ=255)
cccTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGACCAATTTTTCAGACCCGCCTCGGTCGAACAAGCGCTGGAACTGACGCGCCGCAACCAGGATGAAGCCGGCAGGTTCGCCGGGGGCAGCAAAc > 5:980721/1‑140 (MQ=255)
cccTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGCACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAAc > 7:315431/1‑140 (MQ=255)
cccTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGACGCCGTCTGGTTCGCCGGGGGCAGCAAAc > 5:1125299/1‑140 (MQ=255)
ccgcttcatTCCCAGACGTGGGTAAATTATGGAAAGACGATTTTTGAACAATTTTTCACCCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACt < 8:199762/137‑1 (MQ=255)
ccTCTTCTTTCTCCGATGCGGGTAAATTACGGAAAGACGATGTTTTAACAATTTTTCACACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACt < 8:266474/140‑1 (MQ=255)
ccTCTTCTTTCCTAGAAGTGGGTAAATTAAGTAAAGACGATGATTCAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACt < 7:1033988/140‑1 (MQ=255)
ccTCTTCTTTCATAGAAGTGGGGAAATTAAGGAAAGACGATTATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACt < 6:238527/140‑1 (MQ=255)
ccTCTTCTTTAAGATAAGAGGGTAAATTAAGCAAAGACGATGATTCAACAATTTTTCCGCCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCaaa < 2:968558/138‑1 (MQ=255)
ccTCTTCTTTAAGAGAAGGGGGGAAATTAACGAAAGAAGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCTCTGGAACTGCAGCGCCGCTACCAGGATGAAGCCCTCTGGTTCGCAGGGGGCAGCaaa > 1:972166/1‑138 (MQ=255)
ccTCTTCTATCCTAGAAGCGGGTAAATTAAGTAAAGCCGATTCTTGAACAATTTATCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACt < 5:775056/140‑1 (MQ=255)
catcttctTCCCGCTAATAGGGTAAATTACGCAACGCCGATGATTTAACAATTTTTCAGCCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCaaa < 4:266155/136‑1 (MQ=255)
ctctTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAAc > 3:180100/1‑138 (MQ=255)
ctattcttTCATTTAAGAGGGTAATTTAAGGAACTACTTTGATTGAACATTTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACAAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTc < 8:1074406/137‑1 (MQ=255)
tcttTCTGCGAAGAGGGTAAATTAAGGAAAGACGATGATTGAACAATTTTACAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCaa < 4:143251/138‑1 (MQ=255)
tcttTCAGAGATGAGGGTAAATTATGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCaa < 2:164373/138‑1 (MQ=255)
tcttTCAGAGAAGAGGGTAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCaa < 3:1061312/138‑1 (MQ=255)
tttCATAGAAGAGGTTAAATAAAGTAAAGACTATCATTCAAAAAATTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACg < 4:12035/138‑1 (MQ=255)
catagaataGGTTAAATTAATGAAAGACTATTTTTTAACTATTTTTCACACCAGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTaca < 5:892010/137‑1 (MQ=255)
cAGTGAAGTGGGTAAATTATGGAAAGACTATTATTTAACATTTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTa < 2:189375/138‑1 (MQ=255)
atgagaAGAGGGTAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTaca < 8:1244580/138‑1 (MQ=255)
aagagATTAGGGTAAATTAAGCAAAGACGATTATTTAACAATTTTTCACCCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTaca < 5:23019/139‑1 (MQ=255)
tagaagaGGTGAATTTAAGGAAAGACGATGATTTAACAATTTTTCCGCCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTaca < 3:182988/137‑1 (MQ=255)
aagtGGGTAAATTAAGGAAAGACTATGATTTAACAATTTTTCCTACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGGCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCa < 3:142668/138‑1 (MQ=255)
aagaGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCa > 1:795174/1‑138 (MQ=255)
gAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTa > 1:849346/1‑138 (MQ=255)
ttAAGGAAAGATTATTATTTAAAATTTTTTCAGACCCGCCTCTGTCGAACAAGCGCTGGACATGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGa < 1:1358464/138‑1 (MQ=255)
ggAAAGACGATGCTTGAACAATTTTTCAGCCCCGACTCTGTCGCCCAAGCGCGGGAACTGACGCGCCGCTACCAGGCTGAAGCCGTCTGGTTCGCCGGGGGCAGCCACCTCACCGCTACCCCCACCCGTACCGATaaaaa > 6:569689/1‑140 (MQ=255)
aactaCGATGATTTAACAATTTTACAGCCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGa < 6:1229210/136‑1 (MQ=255)
aaaGACTATGATTGAACAATTTTACTTACCCGACTCTGTCGAACAAGCGCTGTAACTGAAGCGCCGCTAACAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGa < 8:736573/140‑1 (MQ=255)
aaaGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACCCCAACCCGTACCGATAAAAAGa > 6:926863/1‑140 (MQ=255)
aaaGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATaaaaa > 3:457223/1‑138 (MQ=255)
aaaGACGATGATTGAACAATTTTTCAGACACGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGTGGCTGCAAACTCAACGCTCAACCAACCCGTAACGATaaaaa > 1:937770/1‑138 (MQ=255)
aCGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGc > 5:418089/1‑140 (MQ=255)
gatgatTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGc > 1:1014553/1‑138 (MQ=255)
gatgatTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGc > 1:841388/1‑138 (MQ=255)
aCAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCtt < 2:471855/138‑1 (MQ=255)
cAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCCACGCTACACCACCCCGTACCGATAAAAAGATTGCCATTTCCTTg > 3:932336/1‑138 (MQ=255)
cAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCa < 6:976246/140‑1 (MQ=255)
cAATTGTTCAGCCCCGACGCTGTCCAACCAGCGCCGGACCAGAAGCGCCGCTACCAGGATGAAGCCGTCGGGTTCGCCGGGGGCAGCAAACTCAACGCTACCCCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGcc < 8:919667/140‑2 (MQ=255)
aaaTTTTTCAGCCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCa < 5:1257374/139‑1 (MQ=255)
aaaTTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGACGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGACGGGGGCAGCAAACTAAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCa < 7:1115723/139‑1 (MQ=255)
aaaTTTTTCAGACCCGACTCTGTCGAACAAGCGCGGGAACTGCAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTg < 4:855111/137‑1 (MQ=255)
aaaTTTATCATACCCGACTCTGTCTAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACTCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTg < 2:1090450/137‑1 (MQ=255)
aaTTTTTCACCCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCAg < 6:1220373/140‑1 (MQ=255)
ttttCAGACCCGACTCTGTCGAACAAGCGCTGGACCTGACGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCACACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCAGGAt > 6:113271/1‑140 (MQ=255)
tttCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGGACCGATAAAAAGATTGCCATTTCCTTGAAGGa > 2:1181238/1‑138 (MQ=255)
tttCACACCCGACTCTGTCGAACAAGCGCGGGAACTTAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCAGGa < 2:942044/138‑1 (MQ=255)
caCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCAGGATCTgg < 4:896108/137‑1 (MQ=255)
caCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCAGGATCTGGAg < 7:45931/139‑1 (MQ=255)
caCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGAAGAAGCCGTCTGGGTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCAGGATCTgg < 3:812576/137‑1 (MQ=255)
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TCCATTTATGCGCAAGCCAGAAAAGCCGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCAGGATCTGGAG > NZ_CP022686/1640789‑1641063
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
