Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A28 F11 I0 R1
|
246 |
10296.8 |
9866480 |
98.4% |
9708616 |
135.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,640,925 |
A→C |
17.1% |
R7S (AGA→AGC) |
ygfM → |
molybdopterin‑dependent oxidoreductase FAD‑binding subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,640,925 | 0 | A | C | 17.1%
| 212.3
/ 9.2
| 147 | R7S (AGA→AGC) | ygfM | molybdopterin‑dependent oxidoreductase FAD‑binding subunit |
| Reads supporting (aligned to +/- strand): ref base A (58/59); new base C (6/23); total (64/83) |
| Fisher's exact test for biased strand distribution p-value = 6.14e-03 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 154 total aligned reads displayed.
GATTCCATTTATGCGCAAGCCAGAAAAGCCGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCAGGATCTGGAGC > NZ_CP022686/1640786‑1641064
|
gATTCCATTTATGCGCAAGCCATAAAAGCCGCTGCCTGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGa < 7:673080/140‑1 (MQ=255)
cATTTATGCGAAAGCCAGAAACGCCGCGGCCAGTAGGTGGCGCGGGATGTATGCGCTGGCATAAATAACAGCGCCCCTATTATTTCAGAGATGAGGGTAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGa < 2:180894/140‑1 (MQ=255)
aaTTTATGCGCAAGCCAGAAAAGCCGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGa < 2:713933/139‑1 (MQ=255)
tttAGGCGCAAGCCAGAAACGCCGCTGCCAGTATGTGGGGGCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGTAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGAct < 2:1214587/140‑1 (MQ=255)
ttATGCGCACGCCACAAAAGCCGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGAATAAATAACCGCTCCCCTCTTCTTTCAGAGACGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGCCCCGActc < 1:898157/140‑1 (MQ=255)
cgCCAGAAACGCCGCTGCCAGTAGGGGGCGTCGGATGGATGCGCTGGAATAAATAACAGCTCCCCTCTTATTTCAGATAATAGGGGAAATTAAGGAACTACTAGGATTGAACAATTTTTCAGACCCGACTCTGTCGAACa < 2:489437/139‑1 (MQ=255)
cctgAAATGCCGCTGCCTGTATGTGGCGTCGGATGGATGCGCTGGCATAAAAAACAGCTCCCCTCTTCTTTCAGAGAAGTGGGTAAATTAAGGAAAGACGTTGATTGAACAATTTTTCAGACCCGACTCTGTCGAACa < 5:530674/135‑1 (MQ=255)
ccAGAAAAGCCGCTGCCAGTTTGGGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGATAAGTGGGGAAATTAAGGAAACACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAg < 7:377620/140‑1 (MQ=255)
ccGCTGCCAGTATGTGGCGTCGGATGGATGCGCTAGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGaaa > 4:457506/1‑139 (MQ=255)
gCTGCCAGTATGTGGCGTCGGATGGATGCGCTGTCATAAATAACAGCTCCCCTCTGCTTTCAGAGAAGAGGGGAATTTAATGAAAGACACTGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCAGGAAc > 6:217895/1‑138 (MQ=255)
gCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTg > 8:549867/1‑140 (MQ=255)
tGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTg > 6:211864/1‑138 (MQ=255)
tGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCATTCAGAGAAGCGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGCCCCGCCTCTGTCGAACAAGCGCTGGACCTg > 5:886143/1‑138 (MQ=255)
tgGCGTCGGATGTAGGCGCGTGCATAAATAAACGCTCCCCTCTTCTTTCAGATAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTAc < 4:518761/140‑1 (MQ=255)
gggggTCGGTTGTATGCGCTGCAATAAATAACCGCTCCCCTCTTCTTTCATAGAAGTGGGTAAATTAAGGAAAGACTATTATTGAAAAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTAc < 1:756650/136‑1 (MQ=255)
gggCGTCGGATGGTGGGGCGGGCATAAATAAACCCCCCCCTATTCTTTCAGATCAGCGGGTAAATTAAGGAACGACGATTATTGAACAATATTTCACACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTAc < 4:672761/139‑1 (MQ=255)
gggCGTCGGAGGGATGGGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCCGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTAc < 2:666652/139‑1 (MQ=255)
ggccGTCGGTTGGATGCGCTGGCATAAATAACCGCTCCCCTTTTCTTTCTGAGAAGAGGGTAAATTAAGTAACTACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTAc < 8:482349/137‑1 (MQ=255)
cGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAg > 7:1156101/1‑140 (MQ=255)
cGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTGCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACACGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTCCCAg > 4:932824/1‑140 (MQ=255)
gTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCACTGGAACAGAAGCGCCGCTACCa > 6:815338/1‑138 (MQ=255)
tCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGa > 8:551833/1‑140 (MQ=255)
tgCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCgg > 2:713450/1‑139 (MQ=255)
cTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTgg > 7:275589/1‑140 (MQ=255)
cTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTgg > 8:795949/1‑140 (MQ=255)
tGGAATAAAAAACAGCTCCCGTCTTATTTCCCACAACAGGTTAATTTTCGGAAAGACGATTATTGAAAAATTTTTCAGCCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTg < 5:185275/138‑1 (MQ=255)
cATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCg > 4:1090379/1‑140 (MQ=255)
taaataaCTCCTCCCCTCTTCTTTCAGACAATTGGGTAAATTAAGCAAAGACGATTATTTAAAAATTTTTCACACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCg < 6:273718/138‑1 (MQ=255)
ataaCAGCCCCCCTCTTCTTTCAGATATGTGGGTAAATTATGGAAATACGATGATTGAACATTTTTTCCGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCg < 5:966192/138‑1 (MQ=255)
ataaCACCACCCCTCTTCTTCCAGCCAACAGGGTAAATTAAGCAACCCCGATGATTTCACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCGGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCggg < 3:889249/140‑1 (MQ=255)
aaaCACCTCCCCTCTTCTTGAAGTCACTAGGGGAAATTCAGCAAACCCGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGACGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCgggg < 4:94052/139‑1 (MQ=255)
cAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGATAGACGATGATTGAACAATTTTTCAGCCCCGACTCTGTCGAACAAGCGCTGGAACAGAATCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGgcc > 7:360243/1‑139 (MQ=255)
cAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGACCACGCGCTGGCACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGgcc > 8:627699/1‑139 (MQ=255)
cAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGgca > 1:699617/1‑140 (MQ=255)
cAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGgca > 3:168969/1‑140 (MQ=255)
cAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGAGGAATGAACAATTTTTCAGACCCGACTCTGTCGAACACGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGgcc > 7:537886/1‑139 (MQ=255)
gCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGCCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGgcg > 5:332937/1‑137 (MQ=255)
gCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATGAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGCCTCTGTCGCACACGCGCGGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGgccgc > 2:1211643/1‑140 (MQ=255)
caccccTATTCTTTCATAGAAGATGGTAAATTAAGCAAACACCATTATTCAACAATTTTTCACCCCCGACTCTGTAGAACAAGCGCTGGAACTGAAGCGCAGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGgcagca < 8:873205/138‑1 (MQ=255)
ccccTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCaaa > 3:978527/1‑140 (MQ=255)
ccccTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCaaa > 3:1088466/1‑140 (MQ=255)
ccactctTGTTTCAGATAAGTGTGTAAATAATGTAAACACTAATATATAAAAATTTTTCACACCCTACTCTGTCGAACAATCGCTTGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGTCAGCaaa < 2:819287/137‑1 (MQ=255)
cccTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGCAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAAc > 7:885764/1‑140 (MQ=255)
cgtattcttACACACATGAGGTTAAATAAACGAAAGACGATGATTTAAAAATTTTACAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCaaa < 5:413271/134‑1 (MQ=255)
ccgcttcttTCAGTCATCTGGGTAAATTAATGAACGCCGTTGATTGAACAATTTTTCAGCCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACt < 3:716515/137‑1 (MQ=255)
ccTTTTCTTTCAGAGAAGTGGGGAATTTAAGTAAAGACGATGATTGAACATTTTTTCAGCCCCGACTCTGTCGAACACGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCaaa < 6:771369/138‑1 (MQ=255)
ccTCTTCTTTCAGAGACGAGGGTAAATTAAGCAAACCCGATGATTCAACAATTTTTCACACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGTGGCAGCAAACt < 1:11240/140‑1 (MQ=255)
ccTCTTCTTTCAGAGAAGAGGGTAAATTACGGAAAGACGATGATTGAACAATTTTTCAGCCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACt < 1:23117/140‑1 (MQ=255)
ccTCTTCTTTCAGAGAAGAGGGTAAATTAAGTAAAGACGATGATTTAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACt < 2:911552/140‑1 (MQ=255)
ccTCTTCTTTCAGACAAGAGGGTAAATTAAGGAAAGACGATCATTGAACAATTTTTCTGACCCGACTCTGTCGAACAAGCGCTGGAACTGCAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACt < 2:669133/140‑1 (MQ=255)
ccTCTTCTTCCAGCTACGTGGGGAAATTAAGCAACCACGATCATTGAACAATTTTTCCGCCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGTGGCAGCAAACt < 7:258003/140‑1 (MQ=255)
ccTCTTATTTCAGAGAAGTGGGGAAATTAAGTAATCACGATTATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACt < 1:179080/140‑1 (MQ=255)
ccTCTTACTTCAGAGAAGTGGGTAAATTACGCAAAGACGATTATTGAACAATTTTTCCCACCCGACTCTGTCGAACACGCGCTGGAACTGACGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCaaa < 6:91606/138‑1 (MQ=255)
catattcttTCATAGATGAGGGGAAATTACGTAACTACGATTTTTAAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCaaa < 5:152467/134‑1 (MQ=255)
ctctTCTTTCAGAGATGTGGGTAATTTATGTAACGACGATGATTCAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTc < 2:164429/140‑1 (MQ=255)
atcttctTTCAGAGAAGAGGGTAAATTAAGTAACGACTATGATTGAACAATTTTTCAGCCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTc < 4:794849/139‑1 (MQ=255)
cttcttTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGCCTCTGTCGAACCAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTc > 5:477874/1‑138 (MQ=255)
attcttTTAGAGATGTTGGTAAATTAAGTAAACACTTGTTTTTAAAAATTTTTCATCCCCGACTCTGTGGAACAAGCGCTGGATCTTAAGCGCCGCTACAAGGATGAAGCCGTCTGGTTCGCCGGTGGCAGCAAACTCaa < 8:684835/139‑1 (MQ=255)
tttttCAGAGATGAGGGTAAATTACGGAACGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCaa < 5:272130/136‑1 (MQ=255)
tcttTCAGAGAAGAGGGTAAATTAAGAACACACTAGTATTGAAAAATTTTACTGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCaa < 6:1031833/138‑1 (MQ=255)
tcttTCAGAGAAGAGGGTAAATAAAGGAAAGATTATTATTGAAAAATTTTTCAGCCCCTACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCaa < 5:941180/138‑1 (MQ=255)
tatttCAGAGAAGAGGGTAAATTAAGCAACCCCGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACg < 4:626255/138‑1 (MQ=255)
cttTCAGCTAATAGGGTAAATTAAGGACAGCCGATATTTTACAAATTTTGCCCCCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCTCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGc < 3:45112/140‑1 (MQ=255)
cttTCAGAGAAGAGGTGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGAACCGACTCTGTCGAACAAGCGCTGCAACTGAAGCGCCGCTACCAGGAGGAAGCCGTCTGGTTCGCCGGGGGCAGAAACCTCacc > 5:1022126/1‑136 (MQ=255)
cttTCAGAGAAGAGGGGAAATTAAGGAAAGACGAAGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGACCTGAAGCGCCGCTACCACGATGAAGCCGTCTGGTTCGACGGGGGCCGCAAACTCACCGc > 3:262814/1‑140 (MQ=255)
atttCAGAGAATAGGGGAATTTAAGGAAAGACGATGATTTAACAATTTTTCAGCCCCGCCTCTGTCTAACACGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGc < 1:1082094/139‑1 (MQ=255)
cAGTGAAGTGGGGTAATTATGTAAAGACGATGTTTTTACAATTTTTAATTCACGTCTGTTTCGAAGAATCTCTGGAACTGTAGCGCCGATTCCAGGATGTTGACGTATGTTTCGCCGGTGGCAGCAAACTCAACGCTaga < 2:967132/140‑3 (MQ=255)
aatataagtGGGGAAATTATCGAAAGACGATGATTTAACTATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTaca < 7:772643/135‑1 (MQ=255)
agagAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACACGCGCTGGAACTGCAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCACAGCTac > 6:1185327/1‑138 (MQ=255)
ctgaagtGGGTAATTTAAGCAAATACTATGTTTTAAAAATTTTTCACACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACAcc < 1:493880/138‑1 (MQ=255)
cggggAAATTAAGGAACGACGATTATTTAACAATTTTTCCGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCg < 8:105542/139‑1 (MQ=255)
agGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCg > 1:646801/1‑140 (MQ=255)
agGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCg > 4:76926/1‑140 (MQ=255)
ggtaaaTTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTa < 3:961840/137‑1 (MQ=255)
gggAAATTATGCAAAGACGATGATTCAACATTTTTTCTGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTa < 1:616338/140‑1 (MQ=255)
gggAAATTACGGAAAGACGATGATTTCACAATTTTTCTCACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTa < 8:344225/140‑1 (MQ=255)
gggAAATTAAGTAAAGAAGATGATTGAAAAATTTTTCAGACGCGACTCTGTCGAACAAGCGCGGGTACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTa < 4:1006725/140‑1 (MQ=255)
gggAAATTAAGGAATGACGAGTATTGAACAATTTTTCAGCCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTa < 1:883044/140‑1 (MQ=255)
gggAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACACGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCg > 6:897789/1‑138 (MQ=255)
ttaatttAAGTAAATACTTTGATTCAAAAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTAc < 3:457506/135‑1 (MQ=255)
aaaTTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCg > 4:382390/1‑140 (MQ=255)
aaGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATaaa > 4:208587/1‑140 (MQ=255)
aaatatgatgatTGAAAAATTTTTAAGACACGACTCTGTCGAACACGCGCTGGAACTTAAGAGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGa < 8:176501/134‑1 (MQ=255)
aaGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAAAAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTCGTACGCCTGGCGCAGCAAACTCAACGCTACCCCAACCCGTACCGCTAAAAAg > 5:679494/1‑138 (MQ=255)
catgatTGAAAAATTTTTCCCACACTACTCTTTCGTACAAGCGCTTGAACTGAAGCGCCGCTAACAGGATGAAGCCGTCTGGTTCGCCGTGGGCAGCAAACTCTTCGCTACATCAACCCGTACCGATAAAAAGATTGCCa < 8:102448/139‑1 (MQ=255)
aCAATTTTTCACACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGc < 7:45264/140‑1 (MQ=255)
cAATTTTTCAGCCCCGCCTCTGGCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCa < 2:1101988/140‑1 (MQ=255)
cAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTTGTTCTCCGGGGGCCGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGAATTCCATTTCCTTg > 5:1166061/1‑138 (MQ=255)
cAATTTTTCAGACCCGACTCTGTCGAACAAGCGCGGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCa < 8:439521/140‑1 (MQ=255)
aattttttCCGACCCGACTCTGTCGAACAAGCGCTGTAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTg < 5:326458/135‑1 (MQ=255)
aattttttCACCCCCGACTCTGTCGAACAAGCGCTGGAACTGACGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCa < 1:440904/137‑1 (MQ=255)
aaaTTTTTCCGACCCGCCTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTg < 5:271909/137‑1 (MQ=255)
aaaTTTTTCAGCCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCa < 3:1114215/139‑1 (MQ=255)
aaaTTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCa < 3:507240/139‑1 (MQ=255)
tttttCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCAGGa > 8:795314/1‑140 (MQ=255)
gACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCAGGATCTgg < 5:774446/138‑1 (MQ=255)
caCCCGCCTCTGGCGAACAAGCGCTGTAACTGAATCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCAGGATCTGGAg < 2:603226/139‑1 (MQ=255)
caCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCAGGATCTgg < 5:1164874/137‑1 (MQ=255)
caCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCAGGATCTGGAg < 7:836719/139‑1 (MQ=255)
caCCCGACGCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCAGGATCTGGAg < 8:351344/139‑1 (MQ=255)
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GATTCCATTTATGCGCAAGCCAGAAAAGCCGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCAGGATCTGGAGC > NZ_CP022686/1640786‑1641064
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
