Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A29 F11 I0 R1
|
249 |
11230.8 |
10274356 |
98.4% |
10109966 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,640,925 |
A→C |
15.9% |
R7S (AGA→AGC) |
ygfM → |
molybdopterin‑dependent oxidoreductase FAD‑binding subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,640,925 | 0 | A | C | 15.9%
| 264.2
/ 12.0
| 168 | R7S (AGA→AGC) | ygfM | molybdopterin‑dependent oxidoreductase FAD‑binding subunit |
| Reads supporting (aligned to +/- strand): ref base A (70/67); new base C (4/27); total (74/94) |
| Fisher's exact test for biased strand distribution p-value = 9.36e-05 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 171 total aligned reads displayed.
CATTTATGCGCAAGCCAGAAAAGCCGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGAC‑GATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCAGGATCTGGAG > NZ_CP022686/1640791‑1641063
|
aaTTTATGCGCAAGCCAGAAAAGCCGCTGCCAGTATGTGGCGTCGGAGGTATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGTAAATTAAGGAAAGAC‑GATGATTGAACAATTTTTCAGACCCGa < 7:465920/139‑1 (MQ=255)
cAAGCCAGAAAAGCCGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGAC‑GATGATTGAACAATTTTTCAGACCCGACTCTGTCGaa > 2:515382/1‑140 (MQ=255)
cAAGCCAGAAAAGCCGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGAC‑GATGATTGAACAATTTTTCAGACCCGACTCTGTCGaa > 1:1284320/1‑140 (MQ=255)
cAAGCCAGAAAAGCCGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGAC‑GATGATTGAACAATTTTTCAGACCCGACTCTGTCGaa > 6:1091721/1‑140 (MQ=255)
gCCAGAAAAGCCGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGAC‑TATGATTGAACAATTTTTAAGACCCGACTCTGTCGAACaa > 7:277407/1‑140 (MQ=255)
cAGAAAAGCCGCTGACAGGATGTGGAGTCTGATGGATGCGCTGGCATAAATAACAGCTAACCTCTTCTTTCAGAGAATATGTGAAATTAATGAAAGAC‑GATTATTTAAAAATTTTTCAGACCCGACTCTGTCTAaaaa > 4:1081246/1‑138 (MQ=255)
taaaaGCCTCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGTAAATTAAGGAAAGAC‑GATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAgcgc < 8:261593/139‑1 (MQ=255)
taaaaGCCGCTGCCTGTATGTGGCGTCGGTTGGATGCGCTGGCATAAATAACCGCGCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGAC‑TTTGATTGAACATTTTTTCAGACCCGACTCTGTCGAACAAgcgc < 5:16052/139‑1 (MQ=255)
taaaaGCCGCTGCCAGTATGTGGGGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGAC‑TATGATTGAACAATTTTTCAGCCCCGACTCTGTCGAACAAgcgc < 6:968186/139‑1 (MQ=255)
taaaaGCCGCTGCCAGTATGTGGCGTGGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGAC‑GATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAgc < 4:1060236/137‑1 (MQ=255)
aaaaGCCGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGAC‑GATGATTGAACAATTTTTCAGACCCGCCTCTGTCGCTCAAgcgcg > 1:706530/1‑139 (MQ=255)
aacccGCTGCCAGTATGTGGCGTAGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGAC‑GATGATTGAACAATTTTTAAGACCCGACTCTGTCGAACAAGCGCt > 4:1207777/4‑138 (MQ=255)
gCCGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGTAAATTAAGGAAAGAC‑GATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGaa < 6:527148/140‑1 (MQ=255)
ccGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTGAGAGAAGAGGGGAAATTAAGGAAAGAC‑GATGATTGAACAATTTTACAGACCCGCCTCAGACGAACAAGCGCTGGAAc > 7:807802/1‑140 (MQ=255)
ccGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGAC‑GATTATTGAAAAATTTTTCTGACCCGACTCTGGCGAACTAGCGCTGGTAc > 6:649875/1‑140 (MQ=255)
ccGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGAC‑GATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAAc > 1:516963/1‑140 (MQ=255)
ccGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGAC‑GATGATTGAACAATTTTTCAGACCCGACTATGTCGAACAAGCGCTGGAAc > 5:452298/1‑140 (MQ=255)
cTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGAC‑GATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGa > 7:948181/1‑140 (MQ=255)
cTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGAC‑GATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGa > 6:614024/1‑140 (MQ=255)
tgTATGTGGGGTCGTAGGTATGCGCTGGAATAAATAAAAGCCCCCCTCTTATTTCATATAAGTGGGTAAATTAAGTAAAGAC‑GATTATTGAAAAATTTTTCATACCCGACTCTGTCGAACAAGCGCTGGAACTGAAgcgc < 5:614024/139‑1 (MQ=255)
tgTATGTGGGGTCGGATGGATGCGCTGCCATAAATAACAGCTCCCCTTTTATTTCAGAGAAGAGGGGAAATTAAGTAAAGAC‑GATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAgcgc < 2:929317/139‑1 (MQ=255)
tgGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGAC‑GATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTAc > 2:296146/1‑140 (MQ=255)
gggCGTGGGTTGGATGCGCTGTAAAAAATAACAGCTCCCCTCTTCTTTCAGATAATTGGGTAAATTAAGGAAAGAC‑GATGATTGAAAAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTAc < 5:1167366/139‑1 (MQ=255)
gCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGAC‑GATGATTGAACAATTTTTCAGCCCCGACACTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTAccg > 2:1200062/1‑139 (MQ=255)
tCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGAC‑GATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGa > 5:306951/1‑140 (MQ=255)
cGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGAC‑GATGATTGATCAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAAGTGCAGCGCCGCTACCAGGAt > 2:997442/1‑140 (MQ=255)
gatggatgCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGAC‑GATGATTGAACAATTTTTCAGACCCGACTCTGTCGCACAAGCGCTGGAACTGAAGCGCCGCTACCAGGAt > 4:823236/1‑138 (MQ=255)
ggttgCGCTGGAATAAATAACAGCCCCCCTCTTTTTTCTTATAAGTGGGTAAATTATGTAAATCC‑GTTTATTTAACAATTTTTCCCCCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGc < 5:1213198/137‑1 (MQ=255)
atgCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGAC‑GATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCg > 5:316144/1‑140 (MQ=255)
cTGGCATAAATAACAGTTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGAC‑GATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACCACCGCTGGAACTGAAGCGCCGCTACCAGGATGCAGCAGTCTgg > 7:1170636/1‑140 (MQ=255)
gtcATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGAC‑GATGATTGAACAATTTTTCAGCCCCTACTCTGTCGAACAAGCGCTGGATCTGAAGCGCCGCTACCAGGATGAAGCCGTCTgg > 3:506667/3‑138 (MQ=255)
cATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGAC‑GATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCg > 7:428693/1‑140 (MQ=255)
ataaCAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGAC‑GATGATTGAACAATTTTTCAGCCCAGACTCTGTCGAACAAGCGCTGGAACTGAAGAGCCGCTACCAGGATGAAGCCGTCTTGTTCGCCggg > 5:575230/1‑140 (MQ=255)
ataaCAGCCCCCCTCTTTTTTCATCCAAGAGGGTAAATTAAGTAACTAG‑TATGTTTCAACAATTTTTCAGCCCCTACTCTGTCGAACACGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCggg < 5:171725/140‑1 (MQ=255)
aaaaCCGCTCCCGTCTTCTTTTCGACTATTGGGTAAATTAATTAACGAC‑TATGTTTTAAAAATTTTTCAGCCCCGACTCTGTCGAACAAGCGCGGGAACTGAAGCGCCGCTACCATGATGAAGCCGTCTGGTTCGCCggg < 5:169707/138‑1 (MQ=255)
aaaCACCTCCCCTCTTCTTTCCCAGAAGAGGGTAAATTAAGTAACGAC‑GATTATTGAACAATTTTTCACACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCgggg < 6:306951/139‑1 (MQ=255)
cAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGAC‑GATGATTGAACAATTTTTCAGACCCGACTCTGTCGACCAAGCGCTGGACCTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGGTCGCCGGGGgca > 2:622562/1‑140 (MQ=255)
cAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGAC‑GATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGgca > 5:1252633/1‑140 (MQ=255)
gcgccccTCTTCTTTCACAGAAGAGGGTAAATTATCGAACCACTTGTCATT‑CCCAAGTTTACAGACCCGAATCTGTCGAACAAGCGCTGGAACTGAAGCGCAGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGgcagc < 8:899313/137‑1 (MQ=255)
gCTCCCCTCTTCTTTCAGAGAAGAGGGGAATTTAAGGAAAGAC‑GATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTAGCAGGATGAAGCCGTCTGGTTCGCCGGGGgcagc > 8:414884/1‑140 (MQ=255)
cTCCCCTCTTCTTTCAGAGACGTGGGTAAATTAAGTAAAGAC‑TAGTATTGAAAAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGgcagca < 1:997471/140‑1 (MQ=255)
cTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGAC‑GATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGgcagca > 1:1065706/1‑140 (MQ=255)
ccccTCTTCTTTCAGAGAAGAGGGGAAATTAATGAAAGAC‑GATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGACGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGgcagcata > 8:649109/1‑138 (MQ=255)
cccTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGAC‑GATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAAc > 8:182328/1‑140 (MQ=255)
cccTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGAC‑GATGATTGAACAATTTTTCAGACCAGACTCGGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCacac > 2:552000/1‑140 (MQ=255)
cgttttcttTCAGTGAAGTGTGTAAATTAAGTAAAGAC‑TTTGATTGACCATTTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACt < 1:94863/136‑1 (MQ=255)
ccttgtcttTCAGCTAAGAGGTGAAATTAATAAAAGAC‑TATTATATAACATTTTTACAGCCCCTCATCTGTCGACCAAGCGCGGGACCTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACt < 1:923866/135‑1 (MQ=255)
ccccttcttGCAGCGACCGGGGGAAATTACGGAACCAC‑GAGGATTGAACATTTTTTCCGCCCCGACTCTGTCGAACAAGCGCTGGACCTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACt < 8:1137234/137‑1 (MQ=255)
ccTTTTCTTTCATAGAAGAGGGTAAATTAAGGAAAGAC‑GATTATTGAAAAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCaaa < 4:1289537/138‑1 (MQ=255)
ccTCTTCTTTCATAGAATAGGGTAAATAAAGCAAAGAC‑GATGATTCAAAAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACt < 8:668045/140‑1 (MQ=255)
ccTCTTCTTTCAGATAAGTGGGTAAATTAATTAAAGAC‑TATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACt < 2:66323/140‑1 (MQ=255)
ccTCTTCTTTCAGAGAAGAGGGGAAATTACGGAACGAC‑GATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGTGCCGCTACCAGGATGAAGCCGTCTGGATCGCCGGGGGCAGCAAACt < 2:822795/140‑1 (MQ=255)
ccTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGAC‑GATTATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCaaa < 4:92577/138‑1 (MQ=255)
ccTCTTCTTTCACATAAGTGGGGAAATAAAGCAACCCC‑GATTATTCAACAATTTTTCACCCCCGACTCTGTCGAACAAGCGCTGGAACTGACGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACt < 6:271411/140‑1 (MQ=255)
ccTCTTCTTTACTATAATAGGGTAAATTAAGTAATTAG‑TATTTATGAAAAATTTTTCAGACCCGACTCTGTCTAACAAGCGCTGGAACTTAAGAGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACt < 6:752322/140‑1 (MQ=255)
ccTCTTATTTCCCTGATGTGGGTAAATTAAGGAACGCC‑GATGATTCAACAATTTTTCCGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACt < 2:245936/140‑1 (MQ=255)
ccTCTTATTTCATATACGTGGGTAAATAAAGCAAAGAC‑TATGAATGAAAAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACt < 6:1017011/140‑1 (MQ=255)
ccTCTTATTTCAGATAAGTGGGTAAATTAAGCAAACAA‑TATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACt < 8:1200039/140‑1 (MQ=255)
ccTCTCCTTCCAGCCAATAGGGGAAATAAAGTAAACAC‑GCTGATTCACCAATTTTTCCGCCCCGACTCTGGCGAACAAGCGCTGGAACTGACGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACt < 5:282980/140‑1 (MQ=255)
ccTATTCTTTCCGATAATTGGGTAAATTAATTAATTAC‑TTTTATTGAACAATTTTTAAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCAGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACt < 6:472553/140‑1 (MQ=255)
tcttTCATATAAGTGGGTAAATTAAGTAAAGAC‑GATTATTCAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACg < 5:760131/140‑1 (MQ=255)
tcttTCAGAGAAGAGGGGAAATTAAGGAAAGAC‑GATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACg < 1:941665/140‑1 (MQ=255)
cttTCAGAGAAGAGGGGAAATTAAGGAAAGAC‑GATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTc > 7:1101507/1‑135 (MQ=255)
ttCAGAGAAGAGGGGAAATTAAGGAAAGAC‑GATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGc > 4:1262039/1‑138 (MQ=255)
tCAGAGAAGAGGGGAAATTAAGGAAAGAC‑GATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTac > 1:35496/1‑140 (MQ=255)
cAGAAAATAGGGGATATTAAGGAAACAC‑GATGATTTAACAATTTTTCACCCCCTACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTaca < 6:1161377/140‑1 (MQ=255)
acgagtAGTGGGTAAATTATTGAAAGCC‑TATGATTGAACAATTTTTCCGCCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGGCTGGGTCGCCGGGGGCAGCAAACTCAACGCTaca < 6:216760/138‑1 (MQ=255)
agagAAGAGGGGAAATTAAGGAAAGAC‑GATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCTCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTac > 4:376672/1‑138 (MQ=255)
agagAAGAGGGGAAATTAAGGAAAGAC‑GATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTac > 4:500541/1‑138 (MQ=255)
aattgtggAAATTAATGAAATAC‑TATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAAc < 8:495903/134‑1 (MQ=255)
gagGGGAAATTAAGGAAAGAC‑GATGATAGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGGCTGGTTCGCCGGGGGCCGCAAACTCAACGCTACACCAAacc > 6:79984/1‑140 (MQ=255)
ggtaaaTTCCGGCAAGAC‑GATGATTGACAATTTTTTCCGCCCCGACTCTGTCGAACAAGCGCTGGAACGGACGCGCCGCTACCAGGATGAAGCCGGCTGGTTCGCCGGGGGCAGCAAACTCACCGCTACACCACCCCGtc < 8:355348/137‑2 (MQ=255)
ggAAATTAAGGAACGAC‑GATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTAc < 2:731929/140‑1 (MQ=255)
tatgtaaaGAC‑GATGATTGAAAAATTTTTCAGCCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATaa < 1:1310083/135‑1 (MQ=255)
aGGAAAGAC‑TCTTATTGAAAAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATaaaa < 8:816296/140‑1 (MQ=255)
ggAAAGAC‑GATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATaaaaa > 7:1136720/1‑140 (MQ=255)
tgatTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCa > 3:65306/1‑138 (MQ=255)
tGAACAATTATTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACTCTACACCAACCCGTACCCATAACAAGATTGCCATTTc > 3:789700/1‑138 (MQ=255)
aaaattttttCAGACCCGACTCTGTCTAACAAGCGCTGGAACTGCAGCGCAGATACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCATCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCt < 3:413865/133‑1 (MQ=255)
aaCAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGCAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTCCCCCAACCCGTACCGCTAAAAAGATTGCCCTTTCCTTg > 1:826056/1‑140 (MQ=255)
aCAATTTTTCACCCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGc < 5:1091721/140‑1 (MQ=255)
cAATTTTACTCACCCGACTCTGTCGAACAAGCGCTGGAACTGACGCGCCGCTCCCAGGATGAAGCCGTCTGGCTCTCCGGTGGCAGAAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCa < 8:1012906/140‑1 (MQ=255)
aattttttCAGACCCGACTCTGTCGAACAAGCGCTGTAACTGATGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCa < 1:115970/137‑1 (MQ=255)
aaaTTTTTCTGCCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCa < 2:741706/139‑1 (MQ=255)
aaaTTTTTCTGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCa < 7:747684/139‑1 (MQ=255)
aaaTTTTTCCGACCCGACTCTGTCGAACAAGCGCTGTACCTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCa < 1:884038/139‑1 (MQ=255)
aaaTTTTTCAGCCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGCTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCa < 5:368690/139‑1 (MQ=255)
aaaTTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTg < 3:554726/137‑1 (MQ=255)
aaaTTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTg < 3:1262039/137‑1 (MQ=255)
aaaTTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCa < 7:406909/139‑1 (MQ=255)
aaaTTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCa < 8:49052/139‑1 (MQ=255)
aaaTTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCa < 1:954091/139‑1 (MQ=255)
aaaTTTTTCACCCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCa < 1:1111178/139‑1 (MQ=255)
tttCCGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCAGGATc < 1:175852/140‑1 (MQ=255)
gACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTa < 4:827347/90‑1 (MQ=255)
gACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTa > 3:827347/1‑90 (MQ=255)
gACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCAGGATCTGGAg < 8:1136720/140‑1 (MQ=255)
gACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCAGGATCTGGAg < 8:539887/140‑1 (MQ=255)
caCCCGACTCTGTCGAACAAGCGCTGGAACTGACGCGCCGCTACCATGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAAACGGTACCGATAAAAAGATTGCCATTTCCTTTCAGGATCTGGAg < 2:24811/139‑1 (MQ=255)
caCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCAGGATCTGGAg < 2:939340/139‑1 (MQ=255)
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CATTTATGCGCAAGCCAGAAAAGCCGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGAC‑GATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCAGGATCTGGAG > NZ_CP022686/1640791‑1641063
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
