Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A30 F2 I0 R1
|
181 |
7914.3 |
8336376 |
98.4% |
8202993 |
136.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
1,640,925 |
A→C |
9.4% |
R7S (AGA→AGC) |
ygfM → |
molybdopterin‑dependent oxidoreductase FAD‑binding subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 1,640,925 | 0 | A | C | 9.4%
| 217.6
/ 2.0
| 120 | R7S (AGA→AGC) | ygfM | molybdopterin‑dependent oxidoreductase FAD‑binding subunit |
| Reads supporting (aligned to +/- strand): ref base A (58/47); new base C (3/11); total (61/59) |
| Fisher's exact test for biased strand distribution p-value = 2.25e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 122 total aligned reads displayed.
TTCCATTTATGCGCAAGCCAGAAAAGCCGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCAGGATCTGGAG > NZ_CP022686/1640788‑1641063
|
ttCCATTTATGCGCAAGCCAGAATAGCCGCTGCCTGTTTGTGGGGTGGGAGGTATGCGCTGGAATAAATAACAGCTCCCCTCTTATTTCAGATAAGTGGGTAATTTAAGTAAAGACTATTATTGAACAATTTTTCAGAcc < 2:372554/140‑1 (MQ=255)
cATTTATGCGCATGCATGAAAAGCGGCTGCCAGTATGTGGCGGCGTAGGGATGCGCTGTCATAAATAACAGCTCCCCTCTTCTTTCTGAGAAGAGGGGAAATTAAGGAAAGCCGTTGATTGAACATTTTTTCAGACCCGa < 4:370421/140‑1 (MQ=255)
cAAGCCAGAAAAGCCGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGATATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGaa > 7:218411/1‑140 (MQ=255)
cAAGCCAGAAAAGCCGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGaa > 5:750054/1‑140 (MQ=255)
cgCCAGAACAGCCGCTGCCAGTATGTGGGGTCGGAGGGATGCGGTGGAATAAATAACCGCTCCCCTCTTATTTCAGAGACGAGGGTAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACa < 6:174637/139‑1 (MQ=255)
cgCCAGAAACGCCGCTGCCAGTTTGGGGCGGCGGATGGTTGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGTGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACa < 1:102932/139‑1 (MQ=255)
aGCCATAAAAGCCGCTGCCAGTATGTGGCGTCGGTTGGATGGGCTGGATTAAATAACCGCACCCCTCTTTTTTCTGATAAGAGGGTAAATTAAGGAAAGCCGATTATTGAACAATTTTTCAGACCCGACTCTGTCGAACa < 7:132682/140‑1 (MQ=255)
aGCCAGAAAAGCCGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGTCATAAATAACAGCTCCCCTCTTCTTTCAGCGAAGAGGGGAAATTAAGGAAAGACGATGATTTAACAATTTTTCAGACCCGACTCTGTCGAACa < 7:676794/140‑1 (MQ=255)
aGCCAGAAAAGCCGCTGCAAGTATGTGGCGTCGGATGTATGCGCTGTCATAAATAACAGCACCCCTATTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACa < 4:555722/140‑1 (MQ=255)
gCCAGAAAAGCCGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACaa > 3:996258/1‑140 (MQ=255)
ccGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTGTTTCAGAGAAGAGGGCAAATTAAATAAAGACGATGTTTGACCAATTTTTAAGACCCGACTCAGTCGAACAAGCGCTGGAAc > 8:889977/1‑140 (MQ=255)
ccGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGAAGATGAATGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAAc > 3:346963/1‑140 (MQ=255)
ccGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCACCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGTTTGAACAATTTTTCAGCCCCGACTCTGTCGAACAAGCGCTGGatc > 2:163386/1‑138 (MQ=255)
gCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGCAATTAAGGAAAGACGATGAGTGATCAATTTTTCCGACCCGACTCTGTCGAACACGCGCTGGAACTg > 1:97475/1‑140 (MQ=255)
gCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTg > 1:124222/1‑140 (MQ=255)
gCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAg > 3:789170/1‑140 (MQ=255)
ttaggtgGCGTCGGTTGGAGGCGGTGGCATAAAAAACAGCTCCCCGTTTCTTTCAGAGAAGTGGGTAAATAAAGGAAAGACGATGATTGAACAATTTTTCAGCCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGcgcc < 6:760337/136‑1 (MQ=255)
gggCGTCGGATGGATGCGCTGGCAAAAATAACAGCTCCCGTCTGCTTTCACAGAAGAGGGGAAATTAAGGAACGACTATGATTGAACAATTTTTCAGCCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTAc < 8:752278/139‑1 (MQ=255)
gCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCa > 3:579858/1‑140 (MQ=255)
gCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCa > 3:452569/1‑140 (MQ=255)
gCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCa > 1:804256/1‑140 (MQ=255)
cGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGAt > 1:157580/1‑140 (MQ=255)
cGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGAt > 8:233125/1‑140 (MQ=255)
cGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGAt > 8:386692/1‑140 (MQ=255)
cGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGAt > 4:1047494/1‑140 (MQ=255)
ggttggttgCGCTGGAATAAATAACAGCTCCCCTCTTATTTCAGAGATGAGGGTAAATTACGTAAAGACGATGATTAAACATTTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATg < 4:726601/137‑1 (MQ=255)
ggatggatGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATg > 5:107837/1‑140 (MQ=255)
gatggatgCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCCGACCCGACTCTGTCGCACAATCGCTGGAACTGAAGCGCCGCTACCAGGATGa > 6:242737/1‑140 (MQ=255)
gggatgCGAGGGCATAATAAACATCTCACCTCTTCTTTCATAGACGTGGGTAATTTAAGTAAATACTATGATTTAAAATTTTTTATGTCCCGTCTCTGTCTAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAg < 4:721595/139‑1 (MQ=255)
cTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTgg > 7:678337/1‑140 (MQ=255)
cTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGAGGAAGCCGTCTgg > 3:798265/1‑140 (MQ=255)
tGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGt > 2:854478/1‑140 (MQ=255)
cATAAATAACAGCTCCCCTCTTCTGTCAGAGAAGAGGGGTAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACGCTGTCGAACAAGAGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGGCTGGTTCg > 8:816827/1‑140 (MQ=255)
aataaCAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCgg < 2:804256/140‑1 (MQ=255)
ataaCAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGCCGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCggg > 7:774161/1‑140 (MQ=255)
aaaCAGCCCCCCCCTTCTTTCAGTGAAGTGGGTAAATTAAGGAAAGACGCTGTTTGAAAAATTTTTCACACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCgggg < 8:850385/139‑1 (MQ=255)
cAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGATCAATTTTTCAGACACGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGgca > 5:231730/1‑140 (MQ=255)
cAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGgca > 7:13342/1‑140 (MQ=255)
cAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGgca > 3:614495/1‑140 (MQ=255)
cAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGAAGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGGCTGGTTCGCCGGGGgcg > 7:590661/1‑139 (MQ=255)
cAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAAGTAAGGAAAGACGATGATTGAACAATTTTTCAGACACGACTCTGTCGAACGAGCGCTGGAACTGACGCGCCGCTACCAGCATGAAGCCGTCTGGTTCGCCGGGGgcg > 6:202181/1‑139 (MQ=255)
cgccccactctTCTTTCAGATATGAGGGTAAATTAACGAACCACTATTATTTAAAAATTTTTCCTCCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGgcag < 5:205030/133‑1 (MQ=255)
gCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGCACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGgcagg > 5:598714/1‑139 (MQ=255)
gCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGgcagc > 7:116872/1‑140 (MQ=255)
ccaccccTCTTCTTTCATATAAGAGGGTAAATTATGGAAACACGATTATTTAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGgcagc < 6:579124/137‑1 (MQ=255)
ccccTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGACCAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCGGGGGGCAGCaaa > 1:737693/1‑140 (MQ=255)
ccccTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCaaa > 3:915891/1‑140 (MQ=255)
ccccTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCaaa > 1:297930/1‑140 (MQ=255)
ccccTATTCTTTCAGAGAAGAGGGGAAATTAAGGAAACACGATGATTGAACAATTTTTCAGACCCGACTCTGGCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCaaa < 8:734395/140‑1 (MQ=255)
cccTCTTCTTTCAGAGAAGAGGGGAATTTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATTAAGCCGTCTGGTTCGCCGGGGGCAGCAAAc > 6:669635/1‑140 (MQ=255)
cccTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGCCGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGCACTGAAGCGCCGCTACCAGGATGAATCCGTCTGGTTCGCCGGGGGCAGCAAAc > 8:641297/1‑140 (MQ=255)
cccTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACAAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAAc > 1:389972/1‑140 (MQ=255)
cccTATTCTTTCAGACAAGTGGGTAAATTAAGTAAACACTATGATTTAAAAATTTTTCAGACCCGACTCTGTCTAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAAc < 7:131496/140‑1 (MQ=255)
ccccttcttTCCTAGAAGCGGGGAAAATAAGGAACGCCGAGCATAGAACAATTTTTCAGACCCGCCTCTGGCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGACGCCGTCTGGTTCGCCGGGGGCAGCAAACt < 6:686399/137‑1 (MQ=255)
ccTCTTCTTTCCGAGACGTGGGTATATTATGTAACCACGATATTTGATCAATTTTTCAGACCCGCCTATGTCGAACATGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACt < 3:14042/140‑1 (MQ=255)
ccTCTTCTTTCAGAGATGTGGGTAAATTAAGTAAAGACTATGATTCAAAAATTTTTCCCACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACt < 7:787407/140‑1 (MQ=255)
ccTCTTATTTCATATAAGAGGGTAAATTAAGGAAACACGATTATTCAACAATTTTTCAGACCCGACTCTGTCGAACACGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACt < 5:418196/140‑1 (MQ=255)
ccTCTTATTTCAGAGAAGCTGGTAAATAAAGCAACCCCGATTATTGAACAATTTTTCCGCCCCGACTCTGTCGACCAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACt < 5:225259/140‑1 (MQ=255)
ccTCTTATTGCAGAGAATAGGGGAAATTAAGGAAACACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACt < 3:148149/140‑1 (MQ=255)
catattcttTCAGAGAAGTGGGTAATTTACGGAACGCGGTTTATTCAAAATTTTTTCCGCCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACt < 1:922654/136‑1 (MQ=255)
tcttTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACg < 4:579858/140‑1 (MQ=255)
tatttacgagaAGTGGGGAAATTAAGGAAAGCCTATTAGTCAACAATTTTTCTTACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACg < 1:1000526/133‑1 (MQ=255)
tatttCAGAGATGTGGGTAAATTACGCACAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACg < 2:313659/138‑1 (MQ=255)
cttTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGACTGGTTCGCCGGGGGCAGCCAACTCAACGc > 5:301794/1‑140 (MQ=255)
tCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGcgccg < 7:239871/89‑1 (MQ=255)
tCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGcgccg > 8:239871/1‑89 (MQ=255)
tCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTac > 1:28884/1‑140 (MQ=255)
tCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGGCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTac > 7:405624/1‑140 (MQ=255)
tCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACACTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTac > 5:754667/1‑140 (MQ=255)
tCAGAGAAGAGGGGAAATTAAGCAAAGACGATGATTGAACAATTTTTAAGACCCGACTCTGTCGCACAAGACCTGGAACTGAAGCGCCGCTACCAGGATGAACACGTCAGTATCGCAGGGGGCAGCAAACTCAACGCTac > 5:528864/1‑140 (MQ=255)
acAGAGAAGAGGGGAAATTAAGTAAAGACGATGATTGATAAATTTATCTGACCAGACACTGTCGAACAACAGCGGGAACAGAAGCGCCGCTACCAGGAAGCACCCCTCTGGTTCTCGGCGGGCTGCAAACTCCACCCTac > 1:838258/2‑140 (MQ=255)
cttataagaGGTTAATTTAAGTAAATACGATTATTTAAAAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAAATGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTaca < 4:46399/135‑1 (MQ=255)
ctgtgaagtGGGTAAATTAAGGAAAGACGATGATTTAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTaca < 2:297930/136‑1 (MQ=255)
cAGAGAAGAGGGTAAATTAAGGAAAGACGATGATTGAACAATTTTTCCGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTaca < 6:503571/140‑1 (MQ=255)
atgataagaGGGTAAATTAAGGAAAGACGATGATTTAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTaca < 2:870367/135‑1 (MQ=255)
aagatAAGAGGGTAAATTAAGTAAAGACTATTATTTAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTaca < 2:1023843/139‑1 (MQ=255)
gagaAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACAcc > 8:594122/1‑140 (MQ=255)
cagaagaGGGTAAATTAAGCAACGACCATAATTGAACAATTTATCACCCCCCACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACAcc < 1:525966/139‑1 (MQ=255)
aaaTTAAGGAAAGACGATGATTGAACAATGTTTCAGACCCGACTCTGTCGAACAAGCGATGGATCTGAAGCTCCTCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACTCTACTCCAACCCGTACCg > 6:1006807/1‑140 (MQ=255)
aaGACGATGATTTAAAAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGAt < 1:1004848/140‑1 (MQ=255)
gACGATGATTGAACAATTTTTCAGACCCGACTCTGTCTAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTg > 7:488371/1‑140 (MQ=255)
aCGATGATTGATCAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGc > 4:244676/1‑140 (MQ=255)
aCGATGATTGAACAATTTTTCATACCCGACTCTGTCGAACAAGCGCTGGAACTGAATCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGTGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGc < 7:232882/140‑1 (MQ=255)
tatTGAAAATTTTTTCAGCCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCAttt < 7:979637/139‑1 (MQ=255)
atTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTCCCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGAATGCCATTTc > 2:708132/1‑140 (MQ=255)
atTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCt > 1:38062/1‑105 (MQ=255)
atTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCt < 2:38062/105‑1 (MQ=255)
cacaaaTTTTTCAGCCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCtt < 6:382662/136‑1 (MQ=255)
aaCAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTg > 4:630294/1‑140 (MQ=255)
aaCAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTg > 5:710269/1‑140 (MQ=255)
aCAATTTTTCAGCCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGc < 2:6863/140‑1 (MQ=255)
cAATTTTGAAGACCCGACTCTGTCGAACAAGCGCGGGAACTGAAGCGCCGCTACCAGGATGAAGCCGGCTGGTTCGCCGGTGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCa < 8:551995/140‑1 (MQ=255)
aattttttCCCACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCa < 7:113473/137‑1 (MQ=255)
aaaTTTTTCCGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCa < 1:407934/139‑1 (MQ=255)
aaaTTTTTCCGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTGCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCa < 4:975877/139‑1 (MQ=255)
aaaTTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCa < 3:1053870/139‑1 (MQ=255)
aaaTTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCa < 7:386692/139‑1 (MQ=255)
tttCCGCCCCGACTCTGTCGAACAAGCGCGGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCAGGATc < 1:952211/140‑1 (MQ=255)
caCCCGACTCTGTCGAACAAGCGCTGTAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCAGGATCTGGAg < 6:944956/139‑1 (MQ=255)
caCCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCAGGATCTGGAg < 8:597741/139‑1 (MQ=255)
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TTCCATTTATGCGCAAGCCAGAAAAGCCGCTGCCAGTATGTGGCGTCGGATGGATGCGCTGGCATAAATAACAGCTCCCCTCTTCTTTCAGAGAAGAGGGGAAATTAAGGAAAGACGATGATTGAACAATTTTTCAGACCCGACTCTGTCGAACAAGCGCTGGAACTGAAGCGCCGCTACCAGGATGAAGCCGTCTGGTTCGCCGGGGGCAGCAAACTCAACGCTACACCAACCCGTACCGATAAAAAGATTGCCATTTCCTTGCAGGATCTGGAG > NZ_CP022686/1640788‑1641063
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
