mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 37 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 353,591 | 0 | T | C | 66.7% | 3.5 / 11.6 | 15 | K271E (AAA→GAA) | cynR | transcriptional regulator CynR |
| * | NZ_CP009273 | 1,213,865 | 0 | G | T | 61.5% | ‑3.2 / 13.0 | 13 | S361I (AGT→ATT) | pdeG | cyclic diguanylate phosphodiesterase |
| * | NZ_CP009273 | 2,852,466 | 0 | T | G | 60.0% | ‑2.8 / 12.4 | 20 | V672G (GTG→GGG) | mutS | DNA mismatch repair protein MutS |
| * | NZ_CP009273 | 642,203 | 0 | T | G | 58.3% | ‑3.2 / 10.8 | 12 | T255P (ACC→CCC) | citG | triphosphoribosyl‑dephospho‑CoA synthase CitG |
| * | NZ_CP009273 | 1,213,847 | 0 | G | T | 58.3% | 5.6 / 15.3 | 12 | C355F (TGT→TTT) | pdeG | cyclic diguanylate phosphodiesterase |
| * | NZ_CP009273 | 3,126,661 | 0 | T | G | 58.3% | 0.4 / 10.7 | 12 | H219P (CAC→CCC) | yghS | dTMP kinase |
| * | NZ_CP009273 | 172,755 | 0 | A | G | 57.9% | 1.4 / 16.3 | 19 | T388A (ACG→GCG) | clcA | H(+)/Cl(‑) exchange transporter ClcA |
| * | NZ_CP009273 | 353,601 | 0 | C | A | 57.9% | 2.5 / 21.0 | 19 | L267F (TTG→TTT) | cynR | transcriptional regulator CynR |
| * | NZ_CP009273 | 4,058,958 | 0 | G | A | 57.9% | ‑0.5 / 16.3 | 19 | L57L (CTG→TTG) | yihO | MFS transporter |
| * | NZ_CP009273 | 510,080 | 0 | A | C | 57.1% | 7.4 / 12.8 | 14 | V79G (GTG→GGG) | ybbJ | NfeD family protein |
| * | NZ_CP009273 | 2,955,854 | 0 | T | G | 57.1% | 5.5 / 10.8 | 14 | S90S (TCA→TCC) | ppdC | prepilin‑type N‑terminal cleavage/methylation domain‑containing protein |
| * | NZ_CP009273 | 3,659,062 | 0 | C | A | 56.0% | 8.1 / 37.7 | 25 | A37S (GCG→TCG) | gadX | acid resistance transcriptional activator GadX |
| * | NZ_CP009273 | 4,245,989 | 0 | C | T | 55.0% | ‑0.6 / 15.8 | 20 | E136K (GAA→AAA) | plsB | glycerol‑3‑phosphate 1‑O‑acyltransferase PlsB |
| * | NZ_CP009273 | 1,927,661 | 0 | A | T | 54.5% | 1.0 / 12.9 | 11 | S401T (TCA→ACA) | edd | phosphogluconate dehydratase |
| * | NZ_CP009273 | 1,213,870 | 0 | A | C | 53.8% | 7.7 / 10.3 | 13 | T363P (ACC→CCC) | pdeG | cyclic diguanylate phosphodiesterase |
| * | NZ_CP009273 | 510,067 | 0 | C | T | 53.3% | 0.8 / 14.7 | 15 | K83K (AAG→AAA) | ybbJ | NfeD family protein |
| * | NZ_CP009273 | 172,772 | 0 | A | G | 52.9% | 8.4 / 16.4 | 17 | G393G (GGA→GGG) | clcA | H(+)/Cl(‑) exchange transporter ClcA |
| * | NZ_CP009273 | 353,586 | 0 | A | T | 50.0% | 11.2 / 11.7 | 20 | N272K (AAT→AAA) | cynR | transcriptional regulator CynR |
| * | NZ_CP009273 | 4,086,499 | 0 | C | A | 47.4% | 6.4 / 14.0 | 19 | V100V (GTG→GTT) | rhaM | L‑rhamnose mutarotase |
| * | NZ_CP009273 | 3,562,123 | 0 | A | T | 46.4% | 29.5 / 12.3 | 28 | I189N (ATT→AAT) | glgC | glucose‑1‑phosphate adenylyltransferase |