mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 21 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,126,661 | 0 | T | G | 68.4% | ‑5.7 / 11.7 | 19 | H219P (CAC→CCC) | yghS | dTMP kinase |
| * | NZ_CP009273 | 324,496 | 0 | T | G | 62.5% | 7.8 / 14.0 | 16 | T184P (ACC→CCC) | betI | transcriptional regulator BetI |
| * | NZ_CP009273 | 3,571,661 | 0 | A | C | 58.3% | 6.1 / 12.0 | 12 | G142G (GGT→GGG) | gntR | gluconate operon transcriptional repressor GntR |
| * | NZ_CP009273 | 2,334,224 | 0 | T | A | 57.1% | 1.2 / 14.9 | 14 | D1142V (GAT→GTT) | yfaL | AIDA‑I family autotransporter adhesin YfaL/EhaC |
| * | NZ_CP009273 | 799,325 | 0 | G | T | 55.6% | 4.1 / 12.7 | 9 | V123L (GTG→TTG) | ybhJ | hydratase |
| * | NZ_CP009273 | 4,195,542 | 0 | C | A | 55.6% | 2.4 / 10.6 | 9 | A106A (GCG→GCT) | purD | phosphoribosylamine‑‑glycine ligase |
| * | NZ_CP009273 | 3,659,058 | 0 | T | C | 55.0% | 17.9 / 24.5 | 20 | D38G (GAT→GGT) | gadX | acid resistance transcriptional activator GadX |
| * | NZ_CP009273 | 3,659,062 | 0 | C | A | 55.0% | 14.7 / 31.6 | 20 | A37S (GCG→TCG) | gadX | acid resistance transcriptional activator GadX |
| * | NZ_CP009273 | 1,598,494 | 0 | C | T | 54.5% | 0.5 / 10.9 | 11 | S64L (TCG→TTG) | lsrD | autoinducer 2 ABC transporter permease LsrD |
| * | NZ_CP009273 | 2,955,854 | 0 | T | G | 54.5% | 6.6 / 10.6 | 11 | S90S (TCA→TCC) | ppdC | prepilin‑type N‑terminal cleavage/methylation domain‑containing protein |
| * | NZ_CP009273 | 3,341,237 | 0 | T | G | 54.5% | 7.4 / 11.5 | 11 | V255G (GTG→GGG) | rapZ | RNase adapter RapZ |
| * | NZ_CP009273 | 3,571,647 | 0 | T | C | 54.5% | 1.4 / 11.0 | 11 | E147G (GAA→GGA) | gntR | gluconate operon transcriptional repressor GntR |
| * | NZ_CP009273 | 3,744,897 | 0 | A | C | 54.5% | 4.2 / 12.1 | 11 | V111G (GTT→GGT) | yiaT | MipA/OmpV family protein |
| * | NZ_CP009273 | 228,181 | 0 | C | T | 53.8% | 3.1 / 14.5 | 13 | F191F (TTC→TTT) | yafD | endonuclease/exonuclease/phosphatase family protein |
| * | NZ_CP009273 | 2,794,496 | 0 | T | G | 53.8% | 13.8 / 15.4 | 13 | V58G (GTG→GGG) | nrdI | class Ib ribonucleoside‑diphosphate reductase assembly flavoprotein NrdI |
| * | NZ_CP009273 | 3,538,366 | 0 | A | C | 53.8% | 10.3 / 13.3 | 13 | L42F (TTA→TTC) | gntX | DNA utilization protein GntX |
| * | NZ_CP009273 | 4,450,688 | 0 | T | G | 53.8% | 9.1 / 15.4 | 13 | Y597S (TAC→TCC) | nrdD | anaerobic ribonucleoside‑triphosphate reductase |
| * | NZ_CP009273 | 4,582,112 | 0 | T | G | 53.8% | 8.1 / 10.0 | 13 | G213G (GGT→GGG) | tsr | methyl‑accepting chemotaxis protein |
| * | NZ_CP009273 | 4,292,471 | 0 | A | G | 53.3% | 8.4 / 16.7 | 15 | F142S (TTC→TCC) | mdtO | multidrug efflux transporter permease subunit MdtO |
| * | NZ_CP009273 | 240,196 | 0 | A | C | 52.9% | 6.4 / 16.7 | 17 | H56P (CAT→CCT) | lpcA | D‑sedoheptulose 7‑phosphate isomerase |