breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
RA 50,280 T→C F153S (TTT→TCT)  folA → type 3 dihydrofolate reductase
RA 726,489 A→G E484G (GAA→GGA)  rhsC → rhs element protein RhsC
RA 1,613,687 G→T G104V (GGC→GTC)  marR → multiple antibiotic resistance transcriptional regulator MarR
MC JC 2,399,465 Δ7 bp coding (650‑656/939 nt) lrhA ← transcriptional regulator LrhA

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NZ_CP009273 129125 129146 22 2 [1] [1] 2 acnB bifunctional aconitate hydratase 2/2‑methylisocitrate dehydratase
* * ÷ NZ_CP009273 152720 152786 67 2 [1] [1] 5 [yadN] [yadN]
* * ÷ NZ_CP009273 153615 153705 91 4 [1] [1] 2 yadN/folK fimbrial protein/2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine diphosphokinase
* * ÷ NZ_CP009273 235240 235272 33 2 [0] [1] 3 BW25113_RS01100 hypothetical protein
* * ÷ NZ_CP009273 235379 235394 16 2 [0] [1] 2 BW25113_RS01100 hypothetical protein
* * ÷ NZ_CP009273 356981 357574 594 4 [0] [1] 3 [lacA] [lacA]
* * ÷ NZ_CP009273 396612 396681 70 3 [1] [1] 2 [BW25113_RS25915] [BW25113_RS25915]
* * ÷ NZ_CP009273 420893 420928 36 2 [1] [0] 2 queA tRNA preQ1(34) S‑adenosylmethionine ribosyltransferase‑isomerase QueA
* * ÷ NZ_CP009273 428507 428557 51 2 [1] [1] 2 nrdR transcriptional regulator NrdR
* * ÷ NZ_CP009273 537873 537912 40 2 [1] [1] 2 glxK glycerate 3‑kinase
* * ÷ NZ_CP009273 554421 554456 36 2 [1] [1] 2 [fimC] [fimC]
* * ÷ NZ_CP009273 567085 567103 19 2 [1] [0] 2 ybcM helix‑turn‑helix transcriptional regulator
* * ÷ NZ_CP009273 575244 575249 6 2 [0] [1] 3 ybcV/BW25113_RS02885 DUF1398 domain‑containing protein/hypothetical protein
* * ÷ NZ_CP009273 578902 579073 172 2 [1] [1] 3 BW25113_RS26085/appY tail fiber assembly protein/DNA‑binding transcriptional activator AppY
* * ÷ NZ_CP009273 603115 603143 29 2 [0] [1] 2 ybdK/hokE YbdK family carboxylate‑amine ligase/type I toxin‑antitoxin system toxin HokE
* * ÷ NZ_CP009273 613541 613571 31 2 [1] [0] 2 entF/wzz(fepE) enterobactin non‑ribosomal peptide synthetase EntF/LPS O‑antigen length regulator Wzz(fepE)
* * ÷ NZ_CP009273 613811 613833 23 2 [0] [1] 2 wzz(fepE) LPS O‑antigen length regulator Wzz(fepE)
* * ÷ NZ_CP009273 647320 647330 11 2 [1] [1] 2 citC/dpiB [citrate (pro‑3S)‑lyase] ligase/sensor histidine kinase DpiB
* * ÷ NZ_CP009273 671951 671966 16 2 [0] [1] 3 ybeQ SEL1‑like repeat protein
* * ÷ NZ_CP009273 674798 674866 69 5 [1] [1] 3 [ybeT] [ybeT]
* * ÷ NZ_CP009273 716369 716538 170 2 [0] [1] 2 [kdpE] [kdpE]
* * ÷ NZ_CP009273 724902 724945 44 2 [1] [1] 2 ybfA/rhsC YbfA family protein/rhs element protein RhsC
* * ÷ NZ_CP009273 731726 731738 13 2 [1] [1] 3 BW25113_RS03640/ybfQ hypothetical protein/ISAs1 family transposase
* * ÷ NZ_CP009273 748404 748426 23 2 [1] [0] 2 ybgD/gltA fimbrial protein/citrate synthase
* * ÷ NZ_CP009273 750463 750507 45 2 [1] [0] 2 BW25113_RS25495/sdhC hypothetical protein/succinate dehydrogenase cytochrome b556 subunit
* * ÷ NZ_CP009273 751340 751358 19 2 [1] [1] 2 sdhD succinate dehydrogenase membrane anchor subunit
* * ÷ NZ_CP009273 760461 760503 43 2 [1] [1] 2 sucD succinate‑‑CoA ligase subunit alpha
* * ÷ NZ_CP009273 763139 763179 41 2 [1] [1] 2 mngA PTS 2‑O‑a‑mannosyl‑D‑glycerate transporter subunit IIABC
* * ÷ NZ_CP009273 766476 766564 89 2 [1] [1] 2 mngB/cydA mannosylglycerate hydrolase/cytochrome ubiquinol oxidase subunit I
* * ÷ NZ_CP009273 772240 772271 32 2 [0] [1] 3 tolA cell envelope integrity protein TolA
* * ÷ NZ_CP009273 805986 805986 1 2 [0] [0] 3 bioF 8‑amino‑7‑oxononanoate synthase
* * ÷ NZ_CP009273 817993 818031 39 3 [1] [1] 2 clsB cardiolipin synthase ClsB
* * ÷ NZ_CP009273 819307 819320 14 2 [0] [0] 3 ybhP endonuclease/exonuclease/phosphatase family protein
* * ÷ NZ_CP009273 836900 836970 71 2 [1] [1] 2 fiu catecholate siderophore receptor Fiu
* * ÷ NZ_CP009273 837159 837264 106 2 [1] [1] 3 [mcbA] [mcbA]
* * ÷ NZ_CP009273 844185 844240 56 2 [1] [1] 2 dps DNA starvation/stationary phase protection protein Dps
* * ÷ NZ_CP009273 845863 845897 35 2 [1] [1] 2 BW25113_RS25505/ompX protein YliM/outer membrane protein OmpX
* * ÷ NZ_CP009273 902983 902992 10 2 [1] [0] 2 ybjT SDR family oxidoreductase
* * ÷ NZ_CP009273 903029 903078 50 2 [0] [1] 2 ybjT SDR family oxidoreductase
* * ÷ NZ_CP009273 967338 967393 56 2 [0] [1] 3 ycbJ YcbJ family phosphotransferase
* * ÷ NZ_CP009273 972859 972873 15 2 [1] [0] 2 mukB chromosome partition protein MukB
* * ÷ NZ_CP009273 992975 993158 184 3 [1] [1] 2 ssuE/elfA NADPH‑dependent FMN reductase/fimbrial protein
* * ÷ NZ_CP009273 1006986 1006996 11 2 [1] [1] 2 uup ABC transporter ATP‑binding protein
* * ÷ NZ_CP009273 1023298 1023308 11 3 [1] [1] 3 yccT/yccU DUF2057 family protein/CoA‑binding protein
* * ÷ NZ_CP009273 1028551 1028562 12 2 [1] [0] 2 hyaA hydrogenase 1 small subunit
* * ÷ NZ_CP009273 1039726 1039774 49 2 [0] [1] 3 etp protein‑tyrosine‑phosphatase Etp
* * ÷ NZ_CP009273 1044774 1044806 33 2 [1] [1] 2 [gfcB] [gfcB]
* * ÷ NZ_CP009273 1046254 1046264 11 2 [0] [1] 3 BW25113_RS05135/cspH IS1‑like element IS1D family transposase/cold shock‑like protein CspH
* * ÷ NZ_CP009273 1061795 1061854 60 2 [1] [1] 3 agp bifunctional glucose‑1‑phosphatase/inositol phosphatase
* * ÷ NZ_CP009273 1063792 1063836 45 2 [1] [1] 3 ymdF/rutG general stress protein/pyrimidine utilization transport protein G
* * ÷ NZ_CP009273 1077442 1077469 28 2 [0] [0] 2 BW25113_RS05295 FTR1 family protein
* * ÷ NZ_CP009273 1088096 1088171 76 4 [1] [1] 2 pgaA/dgcT poly‑beta‑1,6 N‑acetyl‑D‑glucosamine export porin PgaA/GGDEF domain‑containing protein
* * ÷ NZ_CP009273 1095428 1095454 27 2 [0] [0] 2 ycdY molecular chaperone YcdY
* * ÷ NZ_CP009273 1098886 1098983 98 3 [1] [1] 2 csgD/csgB biofilm master transcriptional regulator CsgD/curli minor subunit CsgB
* * ÷ NZ_CP009273 1109537 1109580 44 2 [1] [1] 2 msyB acidic protein MsyB
* * ÷ NZ_CP009273 1120834 1120859 26 2 [1] [1] 2 mdtH/rimJ multidrug efflux MFS transporter MdtH/ribosomal protein S5‑alanine N‑acetyltransferase
* * ÷ NZ_CP009273 1144311 1144408 98 2 [1] [1] 2 fabH beta‑ketoacyl‑ACP synthase III
* * ÷ NZ_CP009273 1159763 1159791 29 2 [1] [1] 2 nagZ beta‑N‑acetylhexosaminidase
* * ÷ NZ_CP009273 1164414 1164451 38 2 [1] [0] 2 comR/bhsA TetR family copper‑responsive transcriptional repressor ComR/multiple stress resistance protein BhsA
* * ÷ NZ_CP009273 1171963 1171973 11 2 [0] [0] 2 lolC lipoprotein‑releasing ABC transporter permease subunit LolC
* * ÷ NZ_CP009273 1172325 1172325 1 2 [0] [0] 2 lolD lipoprotein‑releasing ABC transporter ATP‑binding protein LolD
* * ÷ NZ_CP009273 1187236 1187278 43 2 [1] [1] 2 purB adenylosuccinate lyase
* * ÷ NZ_CP009273 1187964 1187964 1 2 [0] [0] 3 hflD high frequency lysogenization protein HflD
* * ÷ NZ_CP009273 1192282 1192311 30 2 [1] [1] 2 icd/ymfD NADP‑dependent isocitrate dehydrogenase/class I SAM‑dependent methyltransferase
* * ÷ NZ_CP009273 1193122 1193222 101 2 [0] [1] 2 BW25113_RS05920 hypothetical protein
* * ÷ NZ_CP009273 1205763 1205806 44 3 [1] [1] 4 [mcrA] [mcrA]
* * ÷ NZ_CP009273 1206611 1206671 61 4 [1] [0] 2 [mcrA] [mcrA]
* * ÷ NZ_CP009273 1206717 1206786 70 2 [0] [1] 2 mcrA/BW25113_RS23640 5‑methylcytosine‑specific endonuclease McrA/isocitrate/isopropylmalate family dehydrogenase
* * ÷ NZ_CP009273 1207103 1207135 33 2 [0] [1] 3 BW25113_RS23640/iraM isocitrate/isopropylmalate family dehydrogenase/anti‑adapter protein IraM
* * ÷ NZ_CP009273 1207528 1207598 71 3 [0] [0] 2 iraM/BW25113_RS25985 anti‑adapter protein IraM/protein YmgK
* * ÷ NZ_CP009273 1207819 1207841 23 2 [1] [0] 2 BW25113_RS25985/BW25113_RS25535 protein YmgK/hypothetical protein
* * ÷ NZ_CP009273 1208178 1208194 17 2 [1] [1] 2 ycgX DUF1398 domain‑containing protein
* * ÷ NZ_CP009273 1211769 1211847 79 2 [1] [1] 2 [ymgA]–[ariR] [ymgA],[ariR]
* * ÷ NZ_CP009273 1225861 1225956 96 2 [1] [1] 2 hlyE/umuD hemolysin HlyE/translesion error‑prone DNA polymerase V autoproteolytic subunit
* * ÷ NZ_CP009273 1241933 1241947 15 2 [1] [1] 2 treA alpha,alpha‑trehalase
* * ÷ NZ_CP009273 1264874 1264929 56 2 [1] [1] 3 BW25113_RS06330/BW25113_RS06335 type I toxin‑antitoxin system toxin Ldr family protein/type I toxin‑antitoxin system toxin Ldr family protein
* * ÷ NZ_CP009273 1294947 1294977 31 2 [0] [1] 5 BW25113_RS25865 hypothetical protein
* * ÷ NZ_CP009273 1295556 1295570 15 2 [1] [0] 2 oppA oligopeptide ABC transporter substrate‑binding protein OppA
* * ÷ NZ_CP009273 1305060 1305088 29 2 [1] [1] 2 yciI YciI family protein
* * ÷ NZ_CP009273 1305341 1305435 95 2 [1] [1] 4 [tonB] [tonB]
* * ÷ NZ_CP009273 1320673 1320697 25 4 [0] [1] 2 yciQ DUF2207 domain‑containing protein
* * ÷ NZ_CP009273 1320879 1320939 61 2 [1] [1] 4 [yciQ] [yciQ]
* * ÷ NZ_CP009273 1326910 1326932 23 3 [1] [0] 2 topA type I DNA topoisomerase
* * ÷ NZ_CP009273 1329510 1329543 34 2 [1] [0] 2 ymiA YmiA family putative membrane protein
* * ÷ NZ_CP009273 1329968 1329978 11 2 [1] [1] 3 BW25113_RS25560/acnA hypothetical protein/aconitate hydratase AcnA
* * ÷ NZ_CP009273 1330141 1330161 21 2 [1] [1] 3 acnA aconitate hydratase AcnA
* * ÷ NZ_CP009273 1335820 1335831 12 2 [0] [1] 2 lapB lipopolysaccharide assembly protein LapB
* * ÷ NZ_CP009273 1340024 1340035 12 2 [0] [1] 3 pdeR cyclic di‑GMP phosphodiesterase
* * ÷ NZ_CP009273 1341099 1341111 13 2 [1] [1] 4 BW25113_RS25050 hypothetical protein
* * ÷ NZ_CP009273 1346187 1346197 11 2 [1] [0] 3 sapF peptide ABC transporter ATP‑binding protein SapF
* * ÷ NZ_CP009273 1354433 1354462 30 3 [1] [1] 2 puuA glutamate‑putrescine ligase
* * ÷ NZ_CP009273 1362239 1362249 11 2 [1] [0] 2 pspF/pspA phage shock protein operon transcriptional activator/phage shock protein PspA
* * ÷ NZ_CP009273 1366947 1367015 69 2 [1] [1] 2 ycjN ABC transporter substrate‑binding protein
* * ÷ NZ_CP009273 1367168 1367192 25 2 [1] [1] 2 ycjN ABC transporter substrate‑binding protein
* * ÷ NZ_CP009273 1375568 1375583 16 2 [1] [0] 2 BW25113_RS06905 ABC transporter ATP‑binding protein
* * ÷ NZ_CP009273 1376122 1376147 26 2 [0] [1] 2 BW25113_RS06905 ABC transporter ATP‑binding protein
* * ÷ NZ_CP009273 1380929 1380980 52 5 [1] [1] 3 [tyrR] [tyrR]
* * ÷ NZ_CP009273 1387435 1387467 33 2 [1] [1] 3 pgrR/mppA DNA‑binding transcriptional regulator PgrR/murein tripeptide ABC transporter substrate‑binding protein MppA
* * ÷ NZ_CP009273 1390142 1390165 24 2 [1] [1] 2 ynaI low conductance mechanosensitive channel YnaI
* * ÷ NZ_CP009273 1396290 1396290 1 3 [0] [0] 2 abgB p‑aminobenzoyl‑glutamate hydrolase subunit AbgB
* * ÷ NZ_CP009273 1403132 1403166 35 2 [1] [1] 2 zntB zinc transporter ZntB
* * ÷ NZ_CP009273 1405065 1405133 69 3 [1] [1] 2 dbpA ATP‑dependent RNA helicase DbpA
* * ÷ NZ_CP009273 1418041 1418060 20 2 [1] [0] 2 trkG Trk system potassium transporter TrkG
* * ÷ NZ_CP009273 1427981–1428239 1428297–1428260 22–317 3 [1] [1] 3 [ydfK] [ydfK]
* * ÷ NZ_CP009273 1433910 1433919 10 2 [1] [1] 3 nifJ pyruvate:ferredoxin (flavodoxin) oxidoreductase
* * ÷ NZ_CP009273 1438991 1439001 11 2 [0] [1] 3 ydbH YdbH family protein
* * ÷ NZ_CP009273 1454108 1454131 24 2 [0] [1] 2 paaC 3‑hydroxyacyl‑CoA dehydrogenase PaaC
* * ÷ NZ_CP009273 1459415 1459555 141 2 [1] [1] 3 BW25113_RS25580 BW25113_RS25580
* * ÷ NZ_CP009273 1470196 1470226 31 2 [1] [1] 2 ydbD DUF2773 domain‑containing bactofilin
* * ÷ NZ_CP009273 1489194 1489225 32 4 [1] [1] 2 ydcI LysR substrate‑binding domain‑containing protein
* * ÷ NZ_CP009273 1521730 1521817 88 2 [0] [1] 2 yncH/BW25113_RS07645 YncH family protein/RHS repeat protein
* * ÷ NZ_CP009273 1524076 1524099 24 2 [1] [1] 2 BW25113_RS07645 RHS repeat protein
* * ÷ NZ_CP009273 1524458 1524550 93 2 [1] [1] 2 BW25113_RS26145 hypothetical protein
* * ÷ NZ_CP009273 1525828 1526017 190 3 [1] [1] 2 [BW25113_RS07655] [BW25113_RS07655]
* * ÷ NZ_CP009273 1537609 1537652 44 2 [1] [1] 2 narU nitrate/nitrite transporter NarU
* * ÷ NZ_CP009273 1538801 1538825 25 2 [1] [1] 3 BW25113_RS07710 leucine‑rich repeat domain‑containing protein
* * ÷ NZ_CP009273 1539124 1539155 32 2 [0] [1] 2 BW25113_RS07710 leucine‑rich repeat domain‑containing protein
* * ÷ NZ_CP009273 1539483 1539515 33 2 [1] [1] 5 BW25113_RS07710 leucine‑rich repeat domain‑containing protein
* * ÷ NZ_CP009273 1543879 1543888 10 4 [0] [0] 2 fdnG formate dehydrogenase‑N subunit alpha
* * ÷ NZ_CP009273 1558639 1558667 29 3 [1] [1] 2 dosP oxygen‑sensing cyclic‑di‑GMP phosphodiesterase
* * ÷ NZ_CP009273 1570324 1570340 17 2 [1] [0] 2 yddB TonB‑dependent receptor plug domain‑containing protein
* * ÷ NZ_CP009273 1572277 1572337 61 2 [1] [1] 2 yddA ABC transporter ATP‑binding protein/permease
* * ÷ NZ_CP009273 1573642 1573691 50 3 [1] [1] 2 yddA/BW25113_RS25610 ABC transporter ATP‑binding protein/permease/protein YneP
* * ÷ NZ_CP009273 1577936 1577961 26 2 [0] [1] 2 [ydeO] [ydeO]
* * ÷ NZ_CP009273 1578265 1578275 11 2 [0] [1] 2 safA/ydeP two‑component system connector SafA/acid resistance putative oxidoreductase YdeP
* * ÷ NZ_CP009273 1580446 1580457 12 2 [1] [1] 2 ydeP acid resistance putative oxidoreductase YdeP
* * ÷ NZ_CP009273 1580831 1580975 145 2 [1] [1] 3 ydeP/ydeQ acid resistance putative oxidoreductase YdeP/fimbrial protein
* * ÷ NZ_CP009273 1592531 1592622 92 2 [1] [1] 2 BW25113_RS07915/lsrK ECSE_1600 family autotransporter/autoinducer‑2 kinase
* * ÷ NZ_CP009273 1618574 1618648 75 3 [1] [1] 2 ydeI YdeI family stress tolerance OB fold protein
* * ÷ NZ_CP009273 1618937 1618994 58 2 [1] [1] 2 ydeI/ydeJ YdeI family stress tolerance OB fold protein/2‑oxo‑tetronate isomerase
* * ÷ NZ_CP009273 1625369 1625408 40 5 [1] [1] 4 ydfJ MHS family MFS transporter
* * ÷ NZ_CP009273 1627504–1627550 1627848 299–345 2 [0] [1] 2 [ydfK] [ydfK]
* * ÷ NZ_CP009273 1631352 1631430 79 2 [0] [1] 2 ydfO DUF1398 domain‑containing protein
* * ÷ NZ_CP009273 1631859 1632000 142 2 [1] [1] 3 [gnsB] [gnsB]
* * ÷ NZ_CP009273 1632452 1632463 12 2 [1] [1] 2 BW25113_RS25620 hypothetical protein
* * ÷ NZ_CP009273 1632984 1633048 65 2 [1] [1] 2 cspI/rzpQ cold shock protein CspI/DUF2514 domain‑containing protein
* * ÷ NZ_CP009273 1633164 1633231 68 2 [1] [1] 3 cspI/rzpQ cold shock protein CspI/DUF2514 domain‑containing protein
* * ÷ NZ_CP009273 1646262 1646266 5 2 [0] [0] 2 BW25113_RS25635 tyrosine‑type recombinase/integrase
* * ÷ NZ_CP009273 1650283 1650365 83 2 [1] [1] 2 ynfB DUF1283 family protein
* * ÷ NZ_CP009273 1661467 1661477 11 2 [1] [0] 2 [bioD] [bioD]
* * ÷ NZ_CP009273 1672454 1672466 13 2 [1] [0] 2 pntA/ydgH Re/Si‑specific NAD(P)(+) transhydrogenase subunit alpha/DUF1471 family protein YdgH
* * ÷ NZ_CP009273 1687693 1687722 30 2 [1] [1] 4 uidB glucuronide transporter
* * ÷ NZ_CP009273 1692714 1692781 68 2 [1] [1] 4 malI mal regulon transcriptional regulator MalI
* * ÷ NZ_CP009273 1702909 1702962 54 2 [1] [1] 2 rsxC electron transport complex subunit RsxC
* * ÷ NZ_CP009273 1703456 1703476 21 2 [1] [1] 3 rsxD electron transport complex subunit RsxD
* * ÷ NZ_CP009273 1718657 1718688 32 2 [1] [1] 2 sodC superoxide dismutase [Cu‑Zn] SodC
* * ÷ NZ_CP009273 1718779 1718816 38 2 [1] [0] 2 sodC superoxide dismutase [Cu‑Zn] SodC
* * ÷ NZ_CP009273 1729344 1729372 29 2 [0] [1] 2 mepH peptidoglycan DD‑endopeptidase MepH
* * ÷ NZ_CP009273 1735397 1735402 6 2 [0] [1] 2 punC/cfa purine nucleoside transporter PunC/cyclopropane fatty acyl phospholipid synthase
* * ÷ NZ_CP009273 1739026 1739036 11 2 [0] [0] 2 mdtK multidrug efflux MATE transporter MdtK
* * ÷ NZ_CP009273 1748958 1749026 69 2 [1] [1] 2 ydhY/fumD ferredoxin‑like protein/fumarate hydratase FumD
* * ÷ NZ_CP009273 1749649 1749682 34 2 [0] [1] 2 fumD/BW25113_RS26160 fumarate hydratase FumD/protein YnhH
* * ÷ NZ_CP009273 1764306 1764361 56 2 [1] [1] 2 ydiK AI‑2E family transporter YdiK
* * ÷ NZ_CP009273 1764612 1764624 13 2 [0] [1] 3 ydiK/rprA AI‑2E family transporter YdiK/antisense sRNA RprA
* * ÷ NZ_CP009273 1766953 1766968 16 3 [1] [0] 2 ydiN MFS transporter
* * ÷ NZ_CP009273 1769805 1769842 38 2 [1] [1] 2 aroD/ydiF type I 3‑dehydroquinate dehydratase/acyl CoA:acetate/3‑ketoacid CoA transferase
* * ÷ NZ_CP009273 1772885 1773009 125 2 [1] [1] 2 ydiP AraC family transcriptional regulator
* * ÷ NZ_CP009273 1776085 1776107 23 3 [1] [0] 2 ydiS FAD‑dependent oxidoreductase
* * ÷ NZ_CP009273 1776738 1776783 46 2 [1] [0] 2 ydiS FAD‑dependent oxidoreductase
* * ÷ NZ_CP009273 1791177 1791209 33 5 [1] [0] 2 pheT phenylalanine‑‑tRNA ligase subunit beta
* * ÷ NZ_CP009273 1796507 1796540 34 2 [1] [1] 3 thrS threonine‑‑tRNA ligase
* * ÷ NZ_CP009273 1800287 1800333 47 2 [1] [1] 2 ydiY YdiY family protein
* * ÷ NZ_CP009273 1802459 1802481 23 2 [1] [1] 2 yniA fructosamine kinase family protein
* * ÷ NZ_CP009273 1823263 1823329 67 2 [1] [1] 2 astD succinylglutamate‑semialdehyde dehydrogenase
* * ÷ NZ_CP009273 1824761 1824815 55 3 [1] [1] 2 astA arginine N‑succinyltransferase
* * ÷ NZ_CP009273 1848419 1848430 12 3 [1] [1] 2 ydjF DeoR/GlpR family DNA‑binding transcription regulator
* * ÷ NZ_CP009273 1848579 1848597 19 2 [1] [1] 2 ydjF DeoR/GlpR family DNA‑binding transcription regulator
* * ÷ NZ_CP009273 1882752 1882801 50 2 [0] [1] 2 fadD long‑chain‑fatty‑acid‑‑CoA ligase FadD
* * ÷ NZ_CP009273 1888074 1888140 67 2 [0] [1] 2 yoaB/yoaC RidA family protein/DUF1889 family protein
* * ÷ NZ_CP009273 1894929 1894954 26 2 [0] [1] 2 yoaE CNNM family cation transport protein YoaE
* * ÷ NZ_CP009273 1902247 1902307 61 3 [1] [1] 2 yobF/yebO DUF2627 domain‑containing protein/YebO family protein
* * ÷ NZ_CP009273 1902393 1902400 8 2 [1] [0] 2 yobF/yebO DUF2627 domain‑containing protein/YebO family protein
* * ÷ NZ_CP009273 1973022 1973100 79 2 [0] [1] 2 flhD/uspC flagellar transcriptional regulator FlhD/universal stress protein UspC
* * ÷ NZ_CP009273 1975238 1975292 55 4 [1] [1] 2 otsB trehalose‑phosphatase
* * ÷ NZ_CP009273 1981144 1981178 35 3 [1] [0] 2 yecJ DUF2766 domain‑containing protein
* * ÷ NZ_CP009273 1987203 1987303 101 2 [1] [1] 3 uvrC excinuclease ABC subunit UvrC
* * ÷ NZ_CP009273 1999670 1999702 33 2 [1] [0] 2 amyA alpha‑amylase
* * ÷ NZ_CP009273 2001040 2001099 60 2 [1] [1] 2 amyA alpha‑amylase
* * ÷ NZ_CP009273 2033695 2033731 37 2 [1] [0] 2 msrP protein‑methionine‑sulfoxide reductase catalytic subunit MsrP
* * ÷ NZ_CP009273 2051099 2051149 51 2 [1] [1] 2 yeeN/BW25113_RS10360 YebC/PmpR family DNA‑binding transcriptional regulator/tRNA‑Asn
* * ÷ NZ_CP009273 2052542 2052588 47 2 [1] [1] 3 yeeO toxic metabolite efflux MATE transporter YeeO
* * ÷ NZ_CP009273 2062043 2062082 40 2 [0] [1] 2 BW25113_RS10415/BW25113_RS24005 IS5‑like element IS5 family transposase/TonB‑dependent receptor plug domain‑containing protein
* * ÷ NZ_CP009273 2091555 2091618 64 2 [1] [1] 3 wzzB LPS O‑antigen chain length determinant protein WzzB
* * ÷ NZ_CP009273 2094854 2094864 11 2 [1] [1] 2 gndA/wbbL NADP‑dependent phosphogluconate dehydrogenase/N‑acetylglucosaminyl‑diphospho‑decaprenol L‑rhamnosyltransferase WbbL
* * ÷ NZ_CP009273 2097483 2097640 158 2 [1] [1] 3 wbbK glycosyltransferase family 1 protein
* * ÷ NZ_CP009273 2100259 2100268 10 2 [0] [1] 4 wzy O16 family O‑antigen polymerase
* * ÷ NZ_CP009273 2101540 2101661 122 2 [1] [1] 2 glf UDP‑galactopyranose mutase
* * ÷ NZ_CP009273 2144500 2144550 51 2 [1] [1] 2 yegI/yegJ protein kinase YegI/DUF2314 domain‑containing protein
* * ÷ NZ_CP009273 2152132 2152172 41 3 [1] [0] 3 mdtC multidrug efflux RND transporter permease subunit MdtC
* * ÷ NZ_CP009273 2180586 2180591 6 2 [1] [0] 2 rcnB Ni(II)/Co(II) efflux transporter accessory subunit RcnB
* * ÷ NZ_CP009273 2181886 2181907 22 2 [1] [0] 2 [yehA] [yehA]
* * ÷ NZ_CP009273 2197687 2197781 95 2 [1] [0] 2 [BW25113_RS11050] [BW25113_RS11050]
* * ÷ NZ_CP009273 2197822 2197831 10 2 [0] [0] 2 BW25113_RS11050/yehL hypothetical protein/MoxR family ATPase
* * ÷ NZ_CP009273 2208279 2208293 15 3 [1] [1] 2 btsS/mlrA two‑component regulatory system sensor histidine kinase BtsS/HTH‑type transcriptional regulator MlrA
* * ÷ NZ_CP009273 2211559 2211604 46 3 [0] [1] 2 yehY glycine betaine ABC transporter permease YehY
* * ÷ NZ_CP009273 2297130 2297221 92 4 [1] [1] 3 BW25113_RS25870 hypothetical protein
* * ÷ NZ_CP009273 2300312 2300406 95 2 [1] [0] 2 mqo/yojI malate dehydrogenase (quinone)/microcin J25 efflux ABC transporter YojI
* * ÷ NZ_CP009273 2357856 2357940 85 3 [1] [1] 2 yfaZ/nudI YfaZ family protein/nucleoside triphosphatase NudI
* * ÷ NZ_CP009273 2370749 2370782 34 3 [1] [1] 2 menH 2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase
* * ÷ NZ_CP009273 2400583 2400640 58 2 [1] [1] 2 lrhA/alaA transcriptional regulator LrhA/alanine transaminase AlaA
* * ÷ NZ_CP009273 2427491 2427509 19 2 [0] [1] 2 accD/dedA acetyl‑CoA carboxylase, carboxyltransferase subunit beta/DedA family protein
* * ÷ NZ_CP009273 2449506 2449542 37 3 [1] [1] 2 yfcV/sixA fimbrial protein/phosphohistidine phosphatase SixA
* * ÷ NZ_CP009273 2457727 2457757 31 2 [1] [1] 2 [mlaA] [mlaA]
* * ÷ NZ_CP009273 2462773 2462851 79 3 [1] [0] 2 BW25113_RS12270 hypothetical protein
* * ÷ NZ_CP009273 2462909 2463009 101 2 [0] [1] 5 BW25113_RS12270 hypothetical protein
* * ÷ NZ_CP009273 2463160 2463237 78 2 [1] [1] 2 BW25113_RS12270 hypothetical protein
* * ÷ NZ_CP009273 2463656 2463777 122 2 [1] [1] 2 BW25113_RS12270 hypothetical protein
* * ÷ NZ_CP009273 2474106 2474159 54 6 [0] [0] 2 [emrY] [emrY]
* * ÷ NZ_CP009273 2485336 2485388 53 2 [1] [1] 2 oxc oxalyl‑CoA decarboxylase
* * ÷ NZ_CP009273 2505249 2505270 22 2 [0] [1] 4 mntH Nramp family divalent metal transporter
* * ÷ NZ_CP009273 2539490 2539536 47 2 [1] [1] 3 murQ N‑acetylmuramic acid 6‑phosphate etherase
* * ÷ NZ_CP009273 2601055 2601119 65 4 [0] [1] 2 hyfF hydrogenase 4 subunit F
* * ÷ NZ_CP009273 2601622 2601678 57 2 [1] [1] 2 hyfF hydrogenase 4 subunit F
* * ÷ NZ_CP009273 2616189 2616219 31 2 [1] [0] 2 purN phosphoribosylglycinamide formyltransferase
* * ÷ NZ_CP009273 2647004 2647011 8 4 [1] [0] 2 sseA/timP 3‑mercaptopyruvate sulfurtransferase/small toxic inner membrane protein TimP
* * ÷ NZ_CP009273 2669831 2669850 20 2 [1] [1] 2 yphD ABC transporter permease
* * ÷ NZ_CP009273 2672270 2672338 69 2 [1] [1] 2 yphF substrate‑binding domain‑containing protein
* * ÷ NZ_CP009273 2682200 2682268 69 2 [1] [1] 2 qseG two‑component system QseEF‑associated lipoprotein QseG
* * ÷ NZ_CP009273 2699034 2699040 7 2 [1] [0] 2 lepA translation elongation factor 4
* * ÷ NZ_CP009273 2714582 2714597 16 2 [1] [1] 2 pat protein lysine acetyltransferase
* * ÷ NZ_CP009273 2767044 2767078 35 6 [1] [0] 5 BW25113_RS13770 hypothetical protein
* * ÷ NZ_CP009273 2778842 2778854 13 2 [1] [0] 2 BW25113_RS25705/BW25113_RS13825 DUF5507 domain‑containing protein/tRNA‑Ile
* * ÷ NZ_CP009273 2779678 2779760 83 3 [1] [0] 4 [BW25113_RS26005] [BW25113_RS26005]
* * ÷ NZ_CP009273 2788233 2788239 7 2 [1] [0] 2 gabP GABA permease
* * ÷ NZ_CP009273 2877656 2877676 21 2 [0] [1] 2 casA/cas3 type I‑E CRISPR‑associated protein Cse1/CasA/CRISPR‑associated helicase/endonuclease Cas3
* * ÷ NZ_CP009273 2898911 2899020 110 2 [1] [1] 2 [BW25113_RS14445] [BW25113_RS14445]
* * ÷ NZ_CP009273 2984432 2984542 111 3 [1] [1] 2 BW25113_RS14825/ygeG hypothetical protein/tetratricopeptide repeat protein
* * ÷ NZ_CP009273 2988554 2988681 128 2 [1] [1] 2 [BW25113_RS26010] [BW25113_RS26010]
* * ÷ NZ_CP009273 3085703 3085721 19 2 [1] [1] 3 gshB glutathione synthase
* * ÷ NZ_CP009273 3178610 3178750 141 2 [0] [1] 2 ubiK/ygiL ubiquinone biosynthesis accessory factor UbiK/fimbrial‑like protein
* * ÷ NZ_CP009273 3247122 3247141 20 3 [1] [1] 2 yhaJ DNA‑binding transcriptional regulator YhaJ
* * ÷ NZ_CP009273 3262641 3262702 62 3 [1] [1] 2 yhaC YhaC family protein
* * ÷ NZ_CP009273 3280728 3280780 53 2 [1] [1] 3 agaI/yraH galactosamine‑6‑phosphate isomerase/fimbrial protein
* * ÷ NZ_CP009273 3354257 3354290 34 3 [1] [1] 3 gltD/gltF glutamate synthase subunit GltD/DUF1120 domain‑containing protein
* * ÷ NZ_CP009273 3371007 3371011 5 3 [0] [1] 2 sspA/rpsI stringent starvation protein A/30S ribosomal protein S9
* * ÷ NZ_CP009273 3463293 3463415 123 2 [0] [1] 2 chiA/tuf bifunctional chitinase/lysozyme/elongation factor Tu
* * ÷ NZ_CP009273 3492766 3492782 17 2 [1] [0] 2 cysG/yhfL siroheme synthase CysG/YhfL family protein
* * ÷ NZ_CP009273 3504378 3504392 15 2 [1] [0] 3 yhfX/yhfY YhfX family PLP‑dependent enzyme/PRD domain protein
* * ÷ NZ_CP009273 3576543 3576548 6 3 [0] [1] 3 BW25113_RS17825 YrhA family protein
* * ÷ NZ_CP009273 3720235 3720252 18 3 [1] [1] 3 [wecH] [wecH]
* * ÷ NZ_CP009273 3745267 3745277 11 2 [0] [1] 2 yiaT/yiaU MipA/OmpV family protein/LysR family transcriptional regulator
* * ÷ NZ_CP009273 3790425 3790465 41 2 [1] [1] 2 waaL O‑antigen ligase
* * ÷ NZ_CP009273 3831805 3831819 15 2 [1] [1] 4 yicL carboxylate/amino acid/amine transporter
* * ÷ NZ_CP009273 3996568 3996602 35 2 [0] [1] 3 [BW25113_RS19825] [BW25113_RS19825]
* * ÷ NZ_CP009273 4225580 4225706 127 2 [1] [1] 2 pgi/yjbE glucose‑6‑phosphate isomerase/exopolysaccharide production protein YjbE
* * ÷ NZ_CP009273 4240848 4240860 13 2 [0] [1] 2 BW25113_RS20970 SopA family protein
* * ÷ NZ_CP009273 4241555 4241616 62 2 [0] [1] 2 BW25113_RS20970 SopA family protein
* * ÷ NZ_CP009273 4306642 4306644 3 2 [0] [1] 2 phnM alpha‑D‑ribose 1‑methylphosphonate 5‑triphosphate diphosphatase
* * ÷ NZ_CP009273 4344739 4344753 15 2 [1] [1] 3 lysS/dtpC lysine‑‑tRNA ligase/dipeptide/tripeptide permease DtpC
* * ÷ NZ_CP009273 4350098 4350150 53 2 [0] [1] 2 cadB/cadC cadaverine/lysine antiporter/lysine decarboxylation/transport transcriptional activator CadC
* * ÷ NZ_CP009273 4427424 4427469 46 2 [0] [1] 2 cysQ/BW25113_RS21900 3'(2'),5'‑bisphosphate nucleotidase CysQ/hypothetical protein
* * ÷ NZ_CP009273 4466694 4466833 140 2 [0] [0] 2 BW25113_RS22080 hypothetical protein
* * ÷ NZ_CP009273 4478228 4478277 50 2 [1] [1] 2 lptG/yjgR LPS export ABC transporter permease LptG/DUF853 domain‑containing protein
* * ÷ NZ_CP009273 4531520 4531539 20 2 [0] [0] 2 fimB/fimE type 1 fimbria switch DNA invertase FimB/type 1 fimbria switch DNA invertase FimE

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NZ_CP009273 286345 =NA (NA)12 (0.980) 7/166 0.5 100% intergenic (+2/+15) BW25113_RS23270/BW25113_RS01405 YfjI family protein/IS1‑like element IS1B family transposase
?NZ_CP009273 3512441 = 0 (0.000)intergenic (‑18/+383) aroK/hofQ shikimate kinase AroK/DNA uptake porin HofQ
* ? NZ_CP009273 360104 =NA (NA)32 (2.600) 21/166 0.0 57.1% intergenic (‑35/+251) lacZ/BW25113_RS23320 beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein
?NZ_CP009273 = 360286 24 (1.950)intergenic (‑217/+69) lacZ/BW25113_RS23320 beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein
* ? NZ_CP009273 = 1391494NA (NA)4 (0.330) 4/164 0.9 100% intergenic (+145/‑128) BW25113_RS06980/ynaJ IS5‑like element IS5 family transposase/DUF2534 family protein
?NZ_CP009273 1972747 = 0 (0.000)intergenic (‑293/‑487) flhD/uspC flagellar transcriptional regulator FlhD/universal stress protein UspC
* ? NZ_CP009273 = 1391495NA (NA)12 (0.980) 8/166 0.4 92.3% intergenic (+146/‑127) BW25113_RS06980/ynaJ IS5‑like element IS5 family transposase/DUF2534 family protein
?NZ_CP009273 1903069 = 1 (0.080)intergenic (‑46/‑113) mgrB/yobH PhoP/PhoQ regulator MgrB/YobH family protein
* ? NZ_CP009273 = 19030722 (0.160)7 (0.570) 7/166 0.5 77.8% intergenic (‑49/‑110) mgrB/yobH PhoP/PhoQ regulator MgrB/YobH family protein
?NZ_CP009273 = 2096424 NA (NA)intergenic (‑68/+3) BW25113_RS10605/wbbL IS5‑like element IS5 family transposase/N‑acetylglucosaminyl‑diphospho‑decaprenol L‑rhamnosyltransferase WbbL
* ? NZ_CP009273 = 19727511 (0.080)22 (1.790) 15/166 0.1 95.7% intergenic (‑297/‑483) flhD/uspC flagellar transcriptional regulator FlhD/universal stress protein UspC
?NZ_CP009273 = 2283592 NA (NA)intergenic (‑68/‑387) BW25113_RS11435/narP IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP
* ? NZ_CP009273 = 35124490 (0.000)10 (0.810) 10/166 0.3 100% intergenic (‑26/+375) aroK/hofQ shikimate kinase AroK/DNA uptake porin HofQ
?NZ_CP009273 3576788 = NA (NA)coding (391/417 nt) BW25113_RS17825 YrhA family protein