mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 29 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,363,673 | 0 | G | T | 64.3% | ‑3.4 / 12.3 | 14 | L13I (CTT→ATT) | nanK | N‑acetylmannosamine kinase |
| * | NZ_CP009273 | 2,897,051 | 0 | C | A | 60.0% | ‑2.2 / 12.2 | 10 | intergenic (+318/+1055) | ygcE/queE | FGGY‑family carbohydrate kinase/7‑carboxy‑7‑deazaguanine synthase QueE |
| * | NZ_CP009273 | 1,430,446 | 0 | A | C | 57.7% | 18.9 / 26.6 | 26 | G235G (GGT→GGG) | ompN | porin OmpN |
| * | NZ_CP009273 | 899,438 | 0 | A | C | 57.1% | 4.4 / 11.2 | 14 | G162G (GGT→GGG) | ybjP | lipoprotein |
| * | NZ_CP009273 | 2,852,477 | 0 | G | A | 56.2% | ‑0.9 / 13.9 | 16 | E676K (GAA→AAA) | mutS | DNA mismatch repair protein MutS |
| * | NZ_CP009273 | 3,126,661 | 0 | T | G | 56.2% | 9.2 / 16.7 | 16 | H219P (CAC→CCC) | yghS | dTMP kinase |
| * | NZ_CP009273 | 2,331,202 | 0 | A | C | 54.5% | 6.8 / 10.8 | 12 | G566G (GGT→GGG) | gyrA | DNA topoisomerase (ATP‑hydrolyzing) subunit A |
| * | NZ_CP009273 | 409,689 | 0 | T | G | 53.8% | ‑2.3 / 11.7 | 13 | P507P (CCA→CCC) | sbcC | exonuclease subunit SbcC |
| * | NZ_CP009273 | 687,303 | 0 | A | G | 53.8% | 6.7 / 15.5 | 13 | intergenic (‑63/+27) | corC/ybeY | CNNM family magnesium/cobalt transport protein CorC/rRNA maturation RNase YbeY |
| * | NZ_CP009273 | 2,587,974 | 0 | A | C | 53.8% | 8.7 / 13.0 | 13 | G415G (GGT→GGG) | tmcA | tRNA cytosine(34) acetyltransferase TmcA |
| * | NZ_CP009273 | 2,678,659 | 0 | A | C | 53.8% | 10.4 / 13.9 | 13 | Y70D (TAT→GAT) | glyA | serine hydroxymethyltransferase |
| * | NZ_CP009273 | 822,957 | 0 | A | G | 53.3% | 9.6 / 13.2 | 15 | L494P (CTC→CCC) | ybhF | ATP‑binding cassette domain‑containing protein |
| * | NZ_CP009273 | 1,254,473 | 0 | T | G | 53.3% | 10.1 / 16.9 | 15 | V76G (GTT→GGT) | ychH | stress‑induced protein YchH |
| * | NZ_CP009273 | 3,126,669 | 0 | A | C | 53.3% | 1.1 / 13.8 | 15 | D216E (GAT→GAG) | yghS | dTMP kinase |
| * | NZ_CP009273 | 4,450,688 | 0 | T | G | 53.3% | 10.4 / 17.6 | 15 | Y597S (TAC→TCC) | nrdD | anaerobic ribonucleoside‑triphosphate reductase |
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 52.6% | 3.7 / 41.5 | 38 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 4,594,167 | 0 | C | T | 52.6% | 7.1 / 42.1 | 38 | S64F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 3,357,755 | 0 | A | T | 52.4% | 13.0 / 30.8 | 21 | P530P (CCA→CCT) | yhcD | fimbrial biogenesis outer membrane usher protein |
| * | NZ_CP009273 | 3,140,032 | 0 | A | C | 52.2% | 23.1 / 26.1 | 23 | V22G (GTT→GGT) | yghW | DUF2623 domain‑containing protein |
| * | NZ_CP009273 | 3,215,393 | 0 | A | G | 51.7% | 32.0 / 39.5 | 29 | D190G (GAT→GGT) | ebgR | transcriptional regulator EbgR |