mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 70.0% | 6.9 / 10.5 | 20 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 4,594,167 | 0 | C | T | 70.0% | 4.6 / 10.8 | 20 | S64F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 353,601 | 0 | C | A | 64.3% | ‑5.7 / 10.2 | 14 | L267F (TTG→TTT) | cynR | transcriptional regulator CynR |
| * | NZ_CP009273 | 2,852,477 | 0 | G | A | 60.0% | ‑3.9 / 10.0 | 15 | E676K (GAA→AAA) | mutS | DNA mismatch repair protein MutS |
| * | NZ_CP009273 | 765,675 | 0 | A | C | 57.1% | 7.6 / 11.7 | 14 | T748P (ACC→CCC) | mngB | mannosylglycerate hydrolase |
| * | NZ_CP009273 | 353,591 | 0 | T | C | 54.5% | 6.5 / 13.0 | 11 | K271E (AAA→GAA) | cynR | transcriptional regulator CynR |
| * | NZ_CP009273 | 1,472,568 | 0 | A | G | 54.5% | 3.0 / 10.2 | 11 | E29G (GAG→GGG) | ynbB | phosphatidate cytidylyltransferase |
| * | NZ_CP009273 | 1,472,570 | 0 | A | G | 54.5% | 5.0 / 10.2 | 11 | R30G (AGA→GGA) | ynbB | phosphatidate cytidylyltransferase |
| * | NZ_CP009273 | 858,015 | 0 | G | T | 53.8% | ‑0.2 / 11.7 | 13 | H16Q (CAC→CAA) | ybiW | glycyl radical protein |
| * | NZ_CP009273 | 3,744,897 | 0 | A | C | 53.8% | 7.5 / 13.4 | 13 | V111G (GTT→GGT) | yiaT | MipA/OmpV family protein |
| * | NZ_CP009273 | 822,955 | 0 | T | G | 53.3% | 9.3 / 16.6 | 15 | T495P (ACC→CCC) | ybhF | ATP‑binding cassette domain‑containing protein |
| * | NZ_CP009273 | 3,357,755 | 0 | A | T | 53.3% | 1.0 / 14.5 | 15 | P530P (CCA→CCT) | yhcD | fimbrial biogenesis outer membrane usher protein |
| * | NZ_CP009273 | 117,252 | 0 | T | G | 52.9% | 9.5 / 15.4 | 17 | T263P (ACC→CCC) | aroP | aromatic amino acid transporter AroP |
| * | NZ_CP009273 | 822,963 | 0 | T | G | 52.9% | 8.0 / 20.7 | 17 | D492A (GAC→GCC) | ybhF | ATP‑binding cassette domain‑containing protein |
| * | NZ_CP009273 | 341,039 | 0 | C | A | 48.0% | 30.8 / 17.4 | 25 | intergenic (+337/‑76) | BW25113_RS01680/BW25113_RS01685 | hypothetical protein/hypothetical protein |
| * | NZ_CP009273 | 341,015 | 0 | G | A | 40.7% | 20.9 / 16.5 | 27 | intergenic (+313/‑100) | BW25113_RS01680/BW25113_RS01685 | hypothetical protein/hypothetical protein |
| * | NZ_CP009273 | 3,806,632 | 0 | C | T | 37.9% | 17.9 / 12.1 | 29 | S181L (TCG→TTG) | coaBC | bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate‑‑cysteine ligase CoaBC |