mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 39 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,571,380 | 0 | A | C | 63.6% | 4.4 / 19.9 | 22 | V166G (GTA→GGA) | yddB | TonB‑dependent receptor plug domain‑containing protein |
| * | NZ_CP009273 | 3,175,957 | 0 | A | T | 63.6% | ‑1.7 / 18.5 | 22 | I17F (ATT→TTT) | zupT | zinc transporter ZupT |
| * | NZ_CP009273 | 497,020 | 0 | A | C | 62.5% | 2.6 / 15.9 | 16 | *559E (TAA→GAA) | ybaL | Kef family K(+) transporter |
| * | NZ_CP009273 | 497,013 | 0 | A | C | 61.5% | 8.8 / 12.3 | 14 | intergenic (+128/+5) | gsk/ybaL | inosine/guanosine kinase/Kef family K(+) transporter |
| * | NZ_CP009273 | 497,028 | 0 | A | C | 60.0% | 6.6 / 13.6 | 15 | V556G (GTG→GGG) | ybaL | Kef family K(+) transporter |
| * | NZ_CP009273 | 497,031 | 0 | A | C | 60.0% | 3.9 / 13.9 | 15 | V555G (GTG→GGG) | ybaL | Kef family K(+) transporter |
| * | NZ_CP009273 | 497,036 | 0 | A | C | 58.8% | 10.2 / 19.3 | 17 | G553G (GGT→GGG) | ybaL | Kef family K(+) transporter |
| * | NZ_CP009273 | 2,380,357 | 0 | A | T | 58.3% | 2.6 / 13.5 | 12 | intergenic (+47/‑56) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| * | NZ_CP009273 | 353,586 | 0 | A | T | 57.1% | ‑2.7 / 12.3 | 14 | N272K (AAT→AAA) | cynR | transcriptional regulator CynR |
| * | NZ_CP009273 | 1,472,583 | 0 | A | G | 57.1% | 7.3 / 16.3 | 14 | E34G (GAG→GGG) | ynbB | phosphatidate cytidylyltransferase |
| * | NZ_CP009273 | 1,476,148 | 0 | T | C | 56.2% | 10.5 / 16.1 | 16 | F336S (TTC→TCC) | ynbD | phosphatase PAP2/dual specificity phosphatase family protein |
| * | NZ_CP009273 | 2,476,743 | 0 | T | A | 55.0% | 11.9 / 26.3 | 20 | I26F (ATT→TTT) | emrK | multidrug efflux MFS transporter periplasmic adaptor subunit EmrK |
| * | NZ_CP009273 | 510,080 | 0 | A | C | 54.5% | 8.7 / 12.5 | 11 | V79G (GTG→GGG) | ybbJ | NfeD family protein |
| * | NZ_CP009273 | 937,169 | 0 | T | G | 54.5% | 3.5 / 11.9 | 11 | V252G (GTG→GGG) | dmsA | dimethylsulfoxide reductase subunit A |
| * | NZ_CP009273 | 2,331,202 | 0 | A | C | 54.5% | 9.1 / 12.6 | 11 | G566G (GGT→GGG) | gyrA | DNA topoisomerase (ATP‑hydrolyzing) subunit A |
| * | NZ_CP009273 | 3,148,998 | 0 | T | G | 54.5% | 5.6 / 10.5 | 11 | G95G (GGT→GGG) | yqhD | alcohol dehydrogenase |
| * | NZ_CP009273 | 3,387,038 | 0 | A | T | 54.5% | 0.4 / 10.9 | 11 | S860R (AGT→AGA) | yhdP | AsmA2 domain‑containing protein YhdP |
| * | NZ_CP009273 | 4,086,494 | 0 | T | G | 54.5% | 4.7 / 10.1 | 11 | Y102S (TAC→TCC) | rhaM | L‑rhamnose mutarotase |
| * | NZ_CP009273 | 1,240,706 | 0 | C | A | 53.8% | 11.4 / 21.3 | 13 | H31N (CAT→AAT) | BW25113_RS06225 | hypothetical protein |
| * | NZ_CP009273 | 1,819,318 | 0 | G | A | 53.8% | 3.5 / 13.3 | 13 | intergenic (‑124/+79) | ves/spy | environmental stress‑induced protein Ves/ATP‑independent periplasmic protein‑refolding chaperone Spy |