mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 41 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 71,561 | 0 | T | G | 66.7% | 7.7 / 12.3 | 15 | N136T (AAC→ACC) | thiB | thiamine ABC transporter substrate binding subunit |
| * | NZ_CP009273 | 595,037 | 0 | A | G | 62.5% | ‑2.3 / 13.0 | 16 | I290V (ATC→GTC) | cusA | Cu(+)/Ag(+) efflux RND transporter permease subunit CusA |
| * | NZ_CP009273 | 700,996 | 0 | C | A | 60.0% | ‑2.4 / 10.4 | 15 | P533T (CCG→ACG) | nagE | PTS N‑acetyl glucosamine transporter subunit IIABC |
| * | NZ_CP009273 | 3,254,414 | 0 | A | C | 57.7% | 5.5 / 31.0 | 26 | V455G (GTG→GGG) | tdcE | 2‑ketobutyrate formate‑lyase/pyruvate formate‑lyase |
| * | NZ_CP009273 | 71,567 | 0 | A | T | 57.1% | 2.1 / 12.3 | 14 | L134Q (CTG→CAG) | thiB | thiamine ABC transporter substrate binding subunit |
| * | NZ_CP009273 | 2,336,785 | 0 | A | C | 57.1% | 11.1 / 15.3 | 14 | G288G (GGT→GGG) | yfaL | AIDA‑I family autotransporter adhesin YfaL/EhaC |
| * | NZ_CP009273 | 3,734,269 | 0 | T | G | 55.3% | 30.5 / 47.7 | 38 | V402G (GTG→GGG) | avtA | valine‑‑pyruvate transaminase |
| * | NZ_CP009273 | 3,808,860 | 0 | T | G | 55.0% | 16.4 / 23.6 | 20 | D90A (GAC→GCC) | pyrE | orotate phosphoribosyltransferase |
| * | NZ_CP009273 | 799,325 | 0 | G | T | 54.5% | 1.6 / 11.5 | 11 | V123L (GTG→TTG) | ybhJ | hydratase |
| * | NZ_CP009273 | 982,470 | 0 | A | C | 53.8% | 2.2 / 15.3 | 13 | intergenic (‑32/+571) | ompF/asnS | porin OmpF/asparagine‑‑tRNA ligase |
| * | NZ_CP009273 | 3,485,387 | 0 | C | T | 53.1% | 7.2 / 43.0 | 33 | Q90Q (CAG→CAA) | ppiA | peptidylprolyl isomerase A |
| * | NZ_CP009273 | 1,544,920 | 0 | A | C | 52.9% | 11.9 / 16.9 | 17 | N68T (AAC→ACC) | fdnH | formate dehydrogenase N subunit beta |
| * | NZ_CP009273 | 937,169 | 0 | T | G | 52.6% | 9.0 / 24.6 | 19 | V252G (GTG→GGG) | dmsA | dimethylsulfoxide reductase subunit A |
| * | NZ_CP009273 | 3,214,126 | 0 | T | C | 52.6% | 17.2 / 27.7 | 19 | I425T (ATC→ACC) | ygjG | putrescine aminotransferase |
| * | NZ_CP009273 | 2,319,929 | 0 | T | G | 52.4% | 17.0 / 31.7 | 21 | G114G (GGT→GGG) | atoB | acetyl‑CoA acetyltransferase |
| * | NZ_CP009273 | 3,659,058 | 0 | T | C | 51.3% | 39.6 / 54.9 | 37 | D38G (GAT→GGT) | gadX | acid resistance transcriptional activator GadX |
| * | NZ_CP009273 | 3,659,062 | 0 | C | A | 48.6% | 39.8 / 27.1 | 37 | A37S (GCG→TCG) | gadX | acid resistance transcriptional activator GadX |
| * | NZ_CP009273 | 1,927,661 | 0 | A | T | 48.5% | 27.3 / 20.0 | 33 | S401T (TCA→ACA) | edd | phosphogluconate dehydratase |
| * | NZ_CP009273 | 1,759,042 | 0 | T | A | 47.8% | 20.8 / 11.9 | 23 | intergenic (‑399/+149) | sufA/ydiH | Fe‑S cluster assembly scaffold SufA/YdiH family protein |
| * | NZ_CP009273 | 3,454,142 | 0 | A | T | 47.6% | 3.3 / 11.0 | 21 | I323F (ATT→TTT) | gspF | type II secretion system inner membrane protein GspF |