mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 45 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,906,011 | 0 | T | G | 60.0% | 6.8 / 15.8 | 15 | T275P (ACC→CCC) | htpX | protease HtpX |
| * | NZ_CP009273 | 3,126,661 | 0 | T | G | 60.0% | ‑0.4 / 15.8 | 15 | H219P (CAC→CCC) | yghS | dTMP kinase |
| * | NZ_CP009273 | 510,067 | 0 | C | T | 57.1% | ‑0.6 / 15.1 | 14 | K83K (AAG→AAA) | ybbJ | NfeD family protein |
| * | NZ_CP009273 | 585,386 | 0 | A | G | 54.5% | 4.3 / 12.5 | 11 | L342P (CTC→CCC) | nfrA | bacteriophage adsorption protein NfrA |
| * | NZ_CP009273 | 4,058,958 | 0 | G | A | 54.5% | 6.2 / 25.6 | 22 | L57L (CTG→TTG) | yihO | MFS transporter |
| * | NZ_CP009273 | 353,601 | 0 | C | A | 53.8% | 5.7 / 24.5 | 26 | L267F (TTG→TTT) | cynR | transcriptional regulator CynR |
| * | NZ_CP009273 | 642,203 | 0 | T | G | 53.3% | 1.4 / 18.8 | 15 | T255P (ACC→CCC) | citG | triphosphoribosyl‑dephospho‑CoA synthase CitG |
| * | NZ_CP009273 | 760,187 | 0 | G | C | 53.3% | 10.2 / 23.1 | 15 | P184P (CCG→CCC) | sucD | succinate‑‑CoA ligase subunit alpha |
| * | NZ_CP009273 | 1,837,171 | 0 | A | G | 53.3% | 0.3 / 16.7 | 15 | M182V (ATG→GTG) | gdhA | NADP‑specific glutamate dehydrogenase |
| * | NZ_CP009273 | 1,906,007 | 0 | T | G | 53.3% | 13.3 / 18.0 | 15 | H276P (CAC→CCC) | htpX | protease HtpX |
| * | NZ_CP009273 | 1,837,182 | 0 | G | A | 50.0% | 3.1 / 10.9 | 16 | K185K (AAG→AAA) | gdhA | NADP‑specific glutamate dehydrogenase |
| * | NZ_CP009273 | 3,199,794 | 0 | C | T | 50.0% | 12.2 / 15.4 | 22 | intergenic (‑179/‑28) | ttdR/ttdA | DNA‑binding transcriptional activator TtdR/L(+)‑tartrate dehydratase subunit alpha |
| * | NZ_CP009273 | 832,042 | 0 | C | G | 47.2% | 38.9 / 15.1 | 36 | A79G (GCG→GGG) | hcxB | hydroxycarboxylate dehydrogenase HcXB |
| * | NZ_CP009273 | 3,234,344 | 0 | T | G | 46.3% | 47.7 / 16.5 | 41 | S348A (TCT→GCT) | sstT | serine/threonine transporter SstT |
| * | NZ_CP009273 | 3,199,811 | 0 | C | A | 45.5% | 32.2 / 11.9 | 22 | intergenic (‑196/‑11) | ttdR/ttdA | DNA‑binding transcriptional activator TtdR/L(+)‑tartrate dehydratase subunit alpha |
| * | NZ_CP009273 | 4,102,506 | 0 | T | G | 44.8% | 32.7 / 10.9 | 29 | G88G (GGT→GGG) | yiiR | DUF805 domain‑containing protein |
| * | NZ_CP009273 | 349,999 | 0 | T | G | 43.6% | 86.0 / 15.0 | 55 | V528G (GTG→GGG) | prpE | propionate‑‑CoA ligase |
| * | NZ_CP009273 | 3,549,566 | 0 | T | C | 41.4% | 38.3 / 12.3 | 29 | S215G (AGT→GGT) | rtcA | RNA 3'‑terminal phosphate cyclase |
| * | NZ_CP009273 | 3,691,100 | 0 | T | G | 40.5% | 50.1 / 11.2 | 37 | V428G (GTG→GGG) | bcsE | cellulose biosynthesis c‑di‑GMP‑binding protein BcsE |
| * | NZ_CP009273 | 3,751,028 | 0 | C | T | 40.5% | 37.2 / 19.0 | 37 | A54T (GCA→ACA) | yiaY | L‑threonine dehydrogenase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 4046794 | 36 (1.170) | 3 (0.110) | 3/138 | 2.1 | 7.9% | intergenic (+16/+213) | hemN/yshB | oxygen‑independent coproporphyrinogen III oxidase/YshB family small membrane protein |
| ? | NZ_CP009273 | = 4046815 | 38 (1.390) | intergenic (+37/+192) | hemN/yshB | oxygen‑independent coproporphyrinogen III oxidase/YshB family small membrane protein | |||||