mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 24 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,436,636 | 0 | A | C | 68.8% | ‑1.8 / 11.2 | 16 | V274G (GTA→GGA) | secY | preprotein translocase subunit SecY |
| * | NZ_CP009273 | 3,401,195 | 0 | T | G | 63.2% | 0.6 / 12.7 | 19 | V77G (GTA→GGA) | panF | sodium/pantothenate symporter |
| * | NZ_CP009273 | 2,955,854 | 0 | T | G | 58.8% | 12.0 / 17.7 | 17 | S90S (TCA→TCC) | ppdC | prepilin‑type N‑terminal cleavage/methylation domain‑containing protein |
| * | NZ_CP009273 | 70,068 | 0 | A | C | 58.3% | 1.8 / 12.2 | 12 | V314G (GTA→GGA) | thiP | thiamine/thiamine pyrophosphate ABC transporter permease ThiP |
| * | NZ_CP009273 | 3,571,661 | 0 | A | C | 58.3% | 7.5 / 12.9 | 12 | G142G (GGT→GGG) | gntR | gluconate operon transcriptional repressor GntR |
| * | NZ_CP009273 | 832,042 | 0 | C | G | 55.6% | 1.8 / 10.3 | 9 | A79G (GCG→GGG) | hcxB | hydroxycarboxylate dehydrogenase HcXB |
| * | NZ_CP009273 | 3,348,801 | 0 | G | A | 55.6% | 6.0 / 22.2 | 18 | E240K (GAA→AAA) | gltB | glutamate synthase large subunit |
| * | NZ_CP009273 | 3,348,816 | 0 | A | C | 55.6% | 20.6 / 24.6 | 18 | T245P (ACC→CCC) | gltB | glutamate synthase large subunit |
| * | NZ_CP009273 | 2,089,571 | 0 | A | G | 54.5% | 4.6 / 11.9 | 11 | I83V (ATT→GTT) | hisF | imidazole glycerol phosphate synthase subunit HisF |
| * | NZ_CP009273 | 2,212,359 | 0 | A | C | 54.5% | 8.1 / 11.5 | 11 | V201G (GTG→GGG) | osmF | glycine betaine ABC transporter substrate‑binding protein OsmF |
| * | NZ_CP009273 | 3,571,657 | 0 | G | A | 54.5% | 2.5 / 10.8 | 11 | P144S (CCC→TCC) | gntR | gluconate operon transcriptional repressor GntR |
| * | NZ_CP009273 | 1,329,948 | 0 | T | G | 53.8% | 12.6 / 17.1 | 13 | intergenic (+24/‑140) | BW25113_RS25560/acnA | hypothetical protein/aconitate hydratase AcnA |
| * | NZ_CP009273 | 3,348,810 | 0 | A | C | 52.9% | 17.4 / 21.6 | 17 | T243P (ACC→CCC) | gltB | glutamate synthase large subunit |
| * | NZ_CP009273 | 3,964,452 | 0 | T | G | 52.9% | 20.4 / 24.1 | 17 | G320G (GGT→GGG) | wecB | UDP‑N‑acetylglucosamine 2‑epimerase (non‑hydrolyzing) |
| * | NZ_CP009273 | 4,544,923 | 0 | C | A | 52.9% | 9.2 / 25.2 | 17 | N177K (AAC→AAA) | uxuR | Uxu operon transcriptional regulator |
| * | NZ_CP009273 | 4,544,926 | 0 | T | A | 52.9% | 7.0 / 21.4 | 17 | N178K (AAT→AAA) | uxuR | Uxu operon transcriptional regulator |
| * | NZ_CP009273 | 3,806,632 | 0 | C | T | 48.3% | 10.9 / 19.8 | 29 | S181L (TCG→TTG) | coaBC | bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate‑‑cysteine ligase CoaBC |
| * | NZ_CP009273 | 3,953,261 | 0 | T | G | 47.8% | 15.7 / 11.0 | 23 | intergenic (‑88/+111) | ppiC/BW25113_RS25790 | peptidylprolyl isomerase PpiC/type II toxin‑antitoxin system PemK/MazF family toxin |
| * | NZ_CP009273 | 4,101,675 | 0 | G | T | 44.4% | 16.8 / 11.7 | 18 | N156K (AAC→AAA) | yiiQ | YiiQ family protein |
| * | NZ_CP009273 | 4,558,329 | 0 | C | A | 39.1% | 40.4 / 10.6 | 23 | R3L (CGT→CTT) | mdtM | multidrug efflux MFS transporter MdtM |