mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 40 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 497,028 | 0 | A | C | 70.6% | 5.2 / 12.1 | 17 | V556G (GTG→GGG) | ybaL | Kef family K(+) transporter |
| * | NZ_CP009273 | 497,031 | 0 | A | C | 70.6% | 1.2 / 12.1 | 17 | V555G (GTG→GGG) | ybaL | Kef family K(+) transporter |
| * | NZ_CP009273 | 4,594,167 | 0 | C | T | 64.5% | ‑3.1 / 29.8 | 31 | S64F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 497,020 | 0 | A | C | 60.0% | 8.1 / 23.6 | 20 | *559E (TAA→GAA) | ybaL | Kef family K(+) transporter |
| * | NZ_CP009273 | 3,991,529 | 0 | A | T | 58.3% | 3.5 / 12.7 | 12 | T63S (ACC→TCC) | uvrD | DNA helicase II |
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 58.1% | 0.8 / 33.2 | 31 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 949,854 | 0 | A | C | 57.9% | 9.4 / 14.4 | 19 | G23G (GGT→GGG) | focA | formate transporter FocA |
| * | NZ_CP009273 | 4,213,525 | 0 | C | T | 57.9% | ‑2.3 / 16.0 | 19 | R11K (AGA→AAA) | iclR | glyoxylate bypass operon transcriptional repressor IclR |
| * | NZ_CP009273 | 33,456 | 0 | C | A | 57.1% | 4.5 / 15.9 | 14 | T880T (ACC→ACA) | carB | carbamoyl‑phosphate synthase large subunit |
| * | NZ_CP009273 | 1,782,788 | 0 | A | C | 57.1% | 4.2 / 16.9 | 14 | T33P (ACC→CCC) | aroH | 3‑deoxy‑7‑phosphoheptulonate synthase AroH |
| * | NZ_CP009273 | 3,214,126 | 0 | T | C | 57.1% | 4.6 / 10.7 | 14 | I425T (ATC→ACC) | ygjG | putrescine aminotransferase |
| * | NZ_CP009273 | 1,548,257 | 0 | T | G | 56.2% | 6.5 / 11.1 | 16 | Y557S (TAC→TCC) | maeA | malate dehydrogenase |
| * | NZ_CP009273 | 1,782,795 | 0 | T | C | 56.2% | 13.8 / 18.5 | 16 | V35A (GTC→GCC) | aroH | 3‑deoxy‑7‑phosphoheptulonate synthase AroH |
| * | NZ_CP009273 | 1,782,797 | 0 | A | C | 56.2% | 13.4 / 20.5 | 16 | T36P (ACC→CCC) | aroH | 3‑deoxy‑7‑phosphoheptulonate synthase AroH |
| * | NZ_CP009273 | 2,356,152 | 0 | C | A | 56.2% | 10.1 / 23.7 | 17 | A321S (GCC→TCC) | yfaY | nicotinamide mononucleotide deamidase‑related protein YfaY |
| * | NZ_CP009273 | 497,036 | 0 | A | C | 55.6% | 10.7 / 19.1 | 18 | G553G (GGT→GGG) | ybaL | Kef family K(+) transporter |
| * | NZ_CP009273 | 3,679,388 | 0 | T | C | 55.6% | 11.3 / 21.8 | 18 | E1049G (GAG→GGG) | bcsC | cellulose synthase complex outer membrane protein BcsC |
| * | NZ_CP009273 | 799,325 | 0 | G | T | 54.5% | 1.5 / 13.2 | 11 | V123L (GTG→TTG) | ybhJ | hydratase |
| * | NZ_CP009273 | 726,200 | 0 | A | C | 53.8% | 11.0 / 16.4 | 13 | T388P (ACC→CCC) | rhsC | rhs element protein RhsC |
| * | NZ_CP009273 | 1,377,991 | 0 | A | C | 53.8% | 8.9 / 12.7 | 14 | G76G (GGT→GGG) | ycjW | LacI family DNA‑binding transcriptional regulator |