mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 42 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,659,058 | 0 | T | C | 64.7% | 5.2 / 13.7 | 17 | D38G (GAT→GGT) | gadX | acid resistance transcriptional activator GadX |
| * | NZ_CP009273 | 653,350 | 0 | T | C | 61.5% | 4.8 / 12.1 | 13 | G15G (GGA→GGG) | crcB | fluoride efflux transporter CrcB |
| * | NZ_CP009273 | 3,348,816 | 0 | A | C | 59.1% | 17.0 / 25.1 | 22 | T245P (ACC→CCC) | gltB | glutamate synthase large subunit |
| * | NZ_CP009273 | 3,273,830 | 0 | A | C | 58.8% | 12.3 / 19.0 | 17 | T85T (ACA→ACC) | agaV | PTS N‑acetylgalactosamine transporter subunit IIB |
| * | NZ_CP009273 | 3,659,062 | 0 | C | A | 58.8% | 7.7 / 22.7 | 17 | A37S (GCG→TCG) | gadX | acid resistance transcriptional activator GadX |
| * | NZ_CP009273 | 3,977,450 | 0 | T | C | 58.8% | 11.1 / 18.6 | 17 | F378S (TTC→TCC) | aslB | anaerobic sulfatase maturase |
| * | NZ_CP009273 | 262,060 | 0 | C | A | 58.3% | 1.7 / 16.1 | 12 | V69F (GTT→TTT) | BW25113_RS25425 | hypothetical protein |
| * | NZ_CP009273 | 3,556,841 | 0 | T | G | 57.9% | 3.7 / 16.6 | 19 | V490G (GTG→GGG) | glpD | glycerol‑3‑phosphate dehydrogenase |
| * | NZ_CP009273 | 3,774,215 | 0 | T | G | 57.9% | 17.4 / 20.8 | 19 | G343G (GGT→GGG) | lldD | quinone‑dependent L‑lactate dehydrogenase |
| * | NZ_CP009273 | 353,591 | 0 | T | C | 56.2% | 10.4 / 19.6 | 16 | K271E (AAA→GAA) | cynR | transcriptional regulator CynR |
| * | NZ_CP009273 | 954,525 | 0 | T | G | 56.2% | 13.7 / 17.8 | 16 | G86G (GGT→GGG) | aroA | 3‑phosphoshikimate 1‑carboxyvinyltransferase |
| * | NZ_CP009273 | 262,051 | 0 | T | G | 54.5% | 4.6 / 12.4 | 11 | T72P (ACC→CCC) | BW25113_RS25425 | hypothetical protein |
| * | NZ_CP009273 | 799,325 | 0 | G | T | 54.5% | 2.7 / 17.5 | 11 | V123L (GTG→TTG) | ybhJ | hydratase |
| * | NZ_CP009273 | 976,689 | 0 | A | G | 54.5% | 7.3 / 11.9 | 11 | I63V (ATC→GTC) | ldtD | L,D‑transpeptidase |
| * | NZ_CP009273 | 3,175,946 | 0 | C | G | 54.5% | 3.6 / 10.2 | 11 | A13G (GCA→GGA) | zupT | zinc transporter ZupT |
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 54.5% | 1.8 / 45.3 | 44 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 997,447 | 0 | T | G | 53.8% | 13.5 / 16.6 | 13 | V62G (GTA→GGA) | elfG | fimbrial protein |
| * | NZ_CP009273 | 3,175,957 | 0 | A | T | 53.8% | 3.8 / 16.0 | 13 | I17F (ATT→TTT) | zupT | zinc transporter ZupT |
| * | NZ_CP009273 | 228,191 | 0 | A | G | 53.3% | 6.6 / 15.8 | 16 | S195G (AGC→GGC) | yafD | endonuclease/exonuclease/phosphatase family protein |
| * | NZ_CP009273 | 700,026 | 0 | T | G | 53.3% | 12.7 / 16.2 | 16 | G209G (GGT→GGG) | nagE | PTS N‑acetyl glucosamine transporter subunit IIABC |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 4398991 = | 52 (2.350) | 3 (0.170) | 3/140 | 1.6 | 7.3% | intergenic (+79/‑101) | rnr/rlmB | ribonuclease R/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB |
| ? | NZ_CP009273 | 4399052 = | 34 (1.870) | intergenic (+140/‑40) | rnr/rlmB | ribonuclease R/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB | |||||