mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 50 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 832,048 | 0 | T | G | 66.7% | 4.3 / 16.2 | 21 | V81G (GTC→GGC) | hcxB | hydroxycarboxylate dehydrogenase HcXB |
| * | NZ_CP009273 | 1,363,696 | 0 | T | C | 66.7% | 8.1 / 11.0 | 15 | F16S (TTC→TCC) | pspD | phage shock protein PspD |
| * | NZ_CP009273 | 3,214,118 | 0 | C | A | 66.7% | ‑3.9 / 18.0 | 18 | A422A (GCC→GCA) | ygjG | putrescine aminotransferase |
| * | NZ_CP009273 | 2,319,929 | 0 | T | G | 65.4% | 2.1 / 25.1 | 26 | G114G (GGT→GGG) | atoB | acetyl‑CoA acetyltransferase |
| * | NZ_CP009273 | 760,181 | 0 | G | C | 64.3% | 0.0 / 11.6 | 14 | P182P (CCG→CCC) | sucD | succinate‑‑CoA ligase subunit alpha |
| * | NZ_CP009273 | 172,755 | 0 | A | G | 64.0% | 3.4 / 20.7 | 25 | T388A (ACG→GCG) | clcA | H(+)/Cl(‑) exchange transporter ClcA |
| * | NZ_CP009273 | 2,964,708 | 0 | G | C | 62.1% | 20.7 / 35.5 | 29 | A27P (GCG→CCG) | ygdR | lipoprotein YgdR |
| * | NZ_CP009273 | 4,527,926 | 0 | A | C | 61.1% | 6.4 / 18.7 | 18 | G219G (GGT→GGG) | nanM | N‑acetylneuraminate epimerase |
| * | NZ_CP009273 | 1,819,288 | 0 | C | T | 60.0% | ‑4.5 / 19.8 | 25 | intergenic (‑94/+109) | ves/spy | environmental stress‑induced protein Ves/ATP‑independent periplasmic protein‑refolding chaperone Spy |
| * | NZ_CP009273 | 536,014 | 0 | T | G | 59.1% | 10.0 / 23.5 | 22 | intergenic (+50/‑7) | allB/ybbY | allantoinase AllB/uracil/xanthine transporter |
| * | NZ_CP009273 | 1,975,994 | 0 | C | G | 58.8% | 8.9 / 20.8 | 18 | intergenic (‑126/+41) | otsB/araH | trehalose‑phosphatase/arabinose ABC transporter permease AraH |
| * | NZ_CP009273 | 3,703,332 | 0 | A | C | 58.3% | 4.0 / 12.2 | 12 | G168G (GGT→GGG) | eptB | kdo(2)‑lipid A phosphoethanolamine 7''‑transferase |
| * | NZ_CP009273 | 721,800 | 0 | G | A | 57.9% | ‑2.4 / 15.4 | 19 | V231V (GTC→GTT) | kdpB | potassium‑transporting ATPase subunit KdpB |
| * | NZ_CP009273 | 2,562,043 | 0 | A | C | 57.1% | 9.0 / 15.6 | 14 | G276G (GGT→GGG) | eutG | ethanolamine utilization ethanol dehydrogenase EutG |
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 56.8% | 1.2 / 37.3 | 37 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 2,336,778 | 0 | T | A | 56.2% | 6.7 / 16.3 | 16 | M291L (ATG→TTG) | yfaL | AIDA‑I family autotransporter adhesin YfaL/EhaC |
| * | NZ_CP009273 | 1,571,380 | 0 | A | C | 55.6% | 13.4 / 19.4 | 18 | V166G (GTA→GGA) | yddB | TonB‑dependent receptor plug domain‑containing protein |
| * | NZ_CP009273 | 4,058,958 | 0 | G | A | 55.2% | 2.6 / 23.8 | 29 | L57L (CTG→TTG) | yihO | MFS transporter |
| * | NZ_CP009273 | 353,586 | 0 | A | T | 54.5% | 0.5 / 11.0 | 11 | N272K (AAT→AAA) | cynR | transcriptional regulator CynR |
| * | NZ_CP009273 | 353,591 | 0 | T | C | 54.5% | 6.0 / 12.3 | 11 | K271E (AAA→GAA) | cynR | transcriptional regulator CynR |