mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 35 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,659,062 | 0 | C | A | 66.7% | ‑4.7 / 11.9 | 18 | A37S (GCG→TCG) | gadX | acid resistance transcriptional activator GadX |
| * | NZ_CP009273 | 1,571,380 | 0 | A | C | 64.3% | 2.3 / 11.3 | 14 | V166G (GTA→GGA) | yddB | TonB‑dependent receptor plug domain‑containing protein |
| * | NZ_CP009273 | 2,556,746 | 0 | A | G | 64.3% | 3.9 / 10.6 | 14 | intergenic (+270/‑205) | BW25113_RS12760/BW25113_RS12765 | hypothetical protein/hypothetical protein |
| * | NZ_CP009273 | 3,273,830 | 0 | A | C | 64.3% | 3.9 / 10.0 | 14 | T85T (ACA→ACC) | agaV | PTS N‑acetylgalactosamine transporter subunit IIB |
| * | NZ_CP009273 | 349,999 | 0 | T | G | 62.5% | 0.5 / 14.6 | 16 | V528G (GTG→GGG) | prpE | propionate‑‑CoA ligase |
| * | NZ_CP009273 | 3,214,126 | 0 | T | C | 61.5% | 2.9 / 12.0 | 13 | I425T (ATC→ACC) | ygjG | putrescine aminotransferase |
| * | NZ_CP009273 | 3,659,058 | 0 | T | C | 61.1% | ‑0.5 / 10.1 | 18 | D38G (GAT→GGT) | gadX | acid resistance transcriptional activator GadX |
| * | NZ_CP009273 | 4,440,600 | 0 | T | G | 61.1% | 1.5 / 14.5 | 18 | G274G (GGT→GGG) | ytfQ | galactofuranose ABC transporter substrate‑binding protein YtfQ |
| * | NZ_CP009273 | 276,800 | 0 | A | C | 57.1% | 12.2 / 14.9 | 14 | Y299D (TAT→GAT) | yagA | IS481‑like element ISEc19 family transposase |
| * | NZ_CP009273 | 700,026 | 0 | T | G | 56.2% | 12.3 / 14.8 | 16 | G209G (GGT→GGG) | nagE | PTS N‑acetyl glucosamine transporter subunit IIABC |
| * | NZ_CP009273 | 3,732,535 | 0 | A | C | 55.6% | 19.7 / 22.4 | 19 | Y560S (TAC→TCC) | malS | alpha‑amylase |
| * | NZ_CP009273 | 3,738,734 | 0 | T | G | 55.6% | 10.0 / 15.6 | 18 | W191G (TGG→GGG) | yiaN | 2,3‑diketo‑L‑gulonate transporter large permease YiaN |
| * | NZ_CP009273 | 3,896,628 | 0 | A | C | 54.5% | 19.7 / 28.9 | 22 | V145G (GTC→GGC) | bglB | 6‑phospho‑beta‑glucosidase BglB |
| * | NZ_CP009273 | 3,896,640 | 0 | G | C | 54.2% | 18.7 / 35.8 | 24 | A141G (GCT→GGT) | bglB | 6‑phospho‑beta‑glucosidase BglB |
| * | NZ_CP009273 | 172,772 | 0 | A | G | 53.8% | 9.1 / 14.8 | 14 | G393G (GGA→GGG) | clcA | H(+)/Cl(‑) exchange transporter ClcA |
| * | NZ_CP009273 | 2,001,832 | 0 | T | G | 53.8% | 11.6 / 14.9 | 13 | G25G (GGT→GGG) | yedE | selenium metabolism membrane protein YedE/FdhT |
| * | NZ_CP009273 | 2,738,448 | 0 | A | C | 53.8% | 10.4 / 15.3 | 13 | V84G (GTG→GGG) | trmD | tRNA (guanosine(37)‑N1)‑methyltransferase TrmD |
| * | NZ_CP009273 | 3,276,090 | 0 | T | G | 53.8% | 26.1 / 30.6 | 26 | G252G (GGT→GGG) | agaS | AgaS family sugar isomerase |
| * | NZ_CP009273 | 3,837,579 | 0 | T | G | 53.8% | 27.5 / 31.5 | 26 | F86V (TTT→GTT) | adeD | adenine deaminase |
| * | NZ_CP009273 | 4,058,956 | 0 | C | A | 53.8% | 1.7 / 10.8 | 13 | L57L (CTG→CTT) | yihO | MFS transporter |