mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP034943 | = 3487378 | 155 (0.590) | 6 (0.020) | 3/250 | NT | 3.8% | intergenic (‑36/‑473) | tagD/EO946_RS17965 | glycerol‑3‑phosphate cytidylyltransferase/WecB/TagA/CpsF family glycosyltransferase |
| ? | NZ_CP034943 | 3487388 = | 149 (0.580) | intergenic (‑46/‑463) | tagD/EO946_RS17965 | glycerol‑3‑phosphate cytidylyltransferase/WecB/TagA/CpsF family glycosyltransferase | |||||
| * | ? | NZ_CP034943 | = 3471153 | 416 (1.600) | 3 (0.010) | 3/250 | NT | 0.72% | coding (683/1905 nt) | EO946_RS17905 | glycosyltransferase |
| ? | NZ_CP034943 | 3471159 = | 410 (1.590) | coding (677/1905 nt) | EO946_RS17905 | glycosyltransferase | |||||
| * | ? | NZ_CP034943 | 2557054 = | 380 (1.460) | 6 (0.030) | 5/226 | NT | 1.7% | coding (180/756 nt) | EO946_RS13225 | metal‑binding protein ZinT |
| ? | NZ_CP034943 | = 2557050 | 349 (1.490) | coding (184/756 nt) | EO946_RS13225 | metal‑binding protein ZinT | |||||
| * | ? | NZ_CP034943 | = 1328839 | 323 (1.240) | 7 (0.030) | 5/252 | NT | 2.1% | coding (315/1359 nt) | htrA | serine protease HtrA |
| ? | NZ_CP034943 | 1328847 = | 326 (1.250) | coding (307/1359 nt) | htrA | serine protease HtrA | |||||
| * | ? | NZ_CP034943 | = 607756 | 323 (1.240) | 5 (0.020) | 3/248 | NT | 1.6% | coding (599/1125 nt) | EO946_RS03185 | collagen‑like protein |
| ? | NZ_CP034943 | 607766 = | 317 (1.240) | coding (609/1125 nt) | EO946_RS03185 | collagen‑like protein | |||||
| * | ? | NZ_CP034943 | 607524 = | 183 (0.700) | 10 (0.040) +GGCTGGTCCGACGTCC |
5/220 | NT | 4.2% | coding (367/1125 nt) | EO946_RS03185 | collagen‑like protein |
| ? | NZ_CP034943 | = 607858 | 346 (1.330) | coding (701/1125 nt) | EO946_RS03185 | collagen‑like protein | |||||
| * | ? | NZ_CP034943 | = 322107 | 260 (1.010) | 2 (0.010) +AAG |
3/242 | NT | 0.77% | pseudogene (55/570 nt) | EO946_RS01795 | hypothetical protein |
| ? | NZ_CP034943 | 322108 = | 261 (1.000) | pseudogene (56/570 nt) | EO946_RS01795 | hypothetical protein | |||||
| * | ? | NZ_CP034943 | = 59076 | 375 (1.440) | 3 (0.010) | 3/252 | NT | 0.79% | coding (606/618 nt) | EO946_RS00320 | 50S ribosomal protein L25/general stress protein Ctc |
| ? | NZ_CP034943 | 59080 = | 379 (1.450) | coding (610/618 nt) | EO946_RS00320 | 50S ribosomal protein L25/general stress protein Ctc | |||||