mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 132,185 | G→A | 5.6% | D560N (GAC→AAC) | fusA → | elongation factor G |
| RA | 316,262 | C→A | 8.0% | Q28K (CAA→AAA) | opuAA → | glycine/proline betaine ABC transporter ATP‑binding protein OpuAA |
| RA | 376,966 | A→C | 9.2% | K781T (AAA→ACA) | srfAA → | surfactin non‑ribosomal peptide synthetase SrfAA |
| RA | 438,792 | C→A | 8.7% | intergenic (‑58/‑48) | gabR ← / → gabT | transcriptional regulator GabR/4‑aminobutyrate‑‑2‑oxoglutarate transaminase |
| RA | 438,810 | G→T | 6.0% | intergenic (‑76/‑30) | gabR ← / → gabT | transcriptional regulator GabR/4‑aminobutyrate‑‑2‑oxoglutarate transaminase |
| RA | 452,125 | T→A | 46.3% | K146I (AAA→ATA) | EO946_RS02320 ← | dienelactone hydrolase family protein |
| RA | 549,057 | C→A | 5.4% | F23L (TTC→TTA) | EO946_RS02865 → | PLP‑dependent aminotransferase family protein |
| RA | 607,260 | G→C | 6.2% | A35P (GCC→CCC) | EO946_RS03185 → | collagen‑like protein |
| RA | 607,359 | A→C | 15.6% | T68P (ACC→CCC) | EO946_RS03185 → | collagen‑like protein |
| RA | 607,514 | T→G | 7.1% | A119A (GCT→GCG) | EO946_RS03185 → | collagen‑like protein |
| RA | 607,682 | G→C | 5.3% | A175A (GCG→GCC) | EO946_RS03185 → | collagen‑like protein |
| RA | 607,700 | A→C | 19.4% | E181D (GAA→GAC) | EO946_RS03185 → | collagen‑like protein |
| RA | 607,838 | A→G | 11.9% | T227T (ACA→ACG) | EO946_RS03185 → | collagen‑like protein |
| RA | 607,847 | G→A | 6.9% | T230T (ACG→ACA) | EO946_RS03185 → | collagen‑like protein |
| RA | 607,853 | C→T | 7.5% | A232A (GCC→GCT) | EO946_RS03185 → | collagen‑like protein |
| RA | 607,856 | A→T | 6.1% | T233T (ACA→ACT) | EO946_RS03185 → | collagen‑like protein |
| RA | 755,531 | A→C | 9.9% | Q22H (CAA→CAC) | EO946_RS03880 → | rhamnogalacturonan acetylesterase |
| RA | 822,230 | T→G | 6.2% | A252A (GCT→GCG) | EO946_RS04190 → | sodium:alanine symporter family protein |
| RA | 1,046,159 | A→G | 6.5% | H73H (CAT→CAC) | EO946_RS05410 ← | HTH‑type transcriptional regulator Hpr |
| RA | 1,112,969 | C→T | 100% | L1022F (CTT→TTT) | addB → | helicase‑exonuclease AddAB subunit AddB |
| RA | 1,151,967 | T→G | 12.6% | K79T (AAA→ACA) | EO946_RS05920 ← | GNAT family N‑acetyltransferase |
| RA | 1,450,016 | G→C | 5.1% | P59P (CCG→CCC) | ccpC → | transcriptional regulator CcpC |
| RA | 1,463,824 | G→T | 10.1% | D44Y (GAT→TAT) | EO946_RS07665 → | ABC transporter ATP‑binding protein/permease |
| RA | 1,488,158 | G→T | 9.6% | D567Y (GAT→TAT) | ade → | adenine deaminase |
| RA | 1,488,371 | G→T | 16.2% | S509* (TCA→TAA) | rnjA ← | ribonuclease J1 |
| RA | 1,512,543 | G→T | 5.9% | intergenic (‑71/‑42) | EO946_RS07905 ← / → typA | YlaF family protein/translational GTPase TypA |
| RA | 1,514,881 | G→T | 7.4% | Q62K (CAA→AAA) | EO946_RS07920 ← | YlaI family protein |
| RA | 1,570,501 | A→T | 5.6% | A62A (GCA→GCT) | spoIIGA → | sigma‑E processing peptidase SpoIIGA |
| RA | 1,570,504 | T→G | 5.2% | G63G (GGT→GGG) | spoIIGA → | sigma‑E processing peptidase SpoIIGA |
| RA | 1,570,510 | G→A | 5.2% | L65L (CTG→CTA) | spoIIGA → | sigma‑E processing peptidase SpoIIGA |
| RA | 2,214,518 | T→G | 5.6% | K60T (AAA→ACA) | nth ← | endonuclease III |
| RA | 2,300,863 | T→G | 7.0% | intergenic (‑194/+202) | ribD ← / ← EO946_RS11710 | bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5‑amino‑6‑(5‑phosphoribosylamino)uracil reductase RibD/hypothetical protein |
| RA | 2,350,847 | G→T | 7.9% | pseudogene (934/1182 nt) | EO946_RS12020 ← | IS3 family transposase |
| RA | 2,350,848 | A→T | 14.2% | pseudogene (933/1182 nt) | EO946_RS12020 ← | IS3 family transposase |
| RA | 2,425,640 | G→T | 6.3% | intergenic (+4/‑17) | EO946_RS12410 → / → EO946_RS12415 | DEAD/DEAH box helicase/YqhG family protein |
| RA | 2,502,242 | T→G | 18.3% | T274P (ACG→CCG) | hrcA ← | heat‑inducible transcriptional repressor HrcA |
| RA | 2,680,400 | A→T | 10.3% | V417D (GTT→GAT) | EO946_RS13875 ← | LysM peptidoglycan‑binding domain‑containing protein |
| RA | 2,775,852 | A→G | 5.4% | G145G (GGT→GGC) | EO946_RS14350 ← | TVP38/TMEM64 family protein |
| RA | 2,775,864 | A→G | 5.6% | S141S (AGT→AGC) | EO946_RS14350 ← | TVP38/TMEM64 family protein |
| RA | 2,775,870 | A→G | 6.3% | F139F (TTT→TTC) | EO946_RS14350 ← | TVP38/TMEM64 family protein |
| RA | 2,775,897 | T→C | 6.1% | L130L (TTA→TTG) | EO946_RS14350 ← | TVP38/TMEM64 family protein |
| RA | 2,775,912 | A→G | 5.9% | F125F (TTT→TTC) | EO946_RS14350 ← | TVP38/TMEM64 family protein |
| RA | 2,865,472 | C→A | 8.3% | D116Y (GAT→TAT) | pulA ← | type I pullulanase |
| RA | 2,982,236 | T→C | 27.3% | noncoding (284/1550 nt) | EO946_RS15435 ← | 16S ribosomal RNA |
| RA | 2,991,262 | G→T | 24.4% | intergenic (+63/‑144) | gbsR → / → bslA | transcriptional regulator GbsR/biofilm‑surface layer protein BslA |
| RA | 3,247,065 | C→T | 100% | intergenic (‑11/+110) | bdbD ← / ← cadA | disulfide bond formation protein BdbD/cadmium‑translocating P‑type ATPase |
| RA | 3,268,712 | G→T | 9.5% | intergenic (+60/+150) | catR → / ← EO946_RS16920 | catDE operon transcriptional regulator CatR/HAMP domain‑containing histidine kinase |
| RA | 3,268,725 | C→A | 10.9% | intergenic (+73/+137) | catR → / ← EO946_RS16920 | catDE operon transcriptional regulator CatR/HAMP domain‑containing histidine kinase |
| RA | 3,280,312 | C→A | 5.3% | L136F (TTG→TTT) | EO946_RS16965 ← | lantibiotic dehydratase |
| RA | 3,280,341 | C→A | 8.8% | E127* (GAG→TAG) | EO946_RS16965 ← | lantibiotic dehydratase |
| RA | 3,285,567 | C→T | 36.6% | L278L (CTG→CTA) | EO946_RS16995 ← | IS3 family transposase |
| RA | 3,285,575 | T→G | 37.8% | N276H (AAT→CAT) | EO946_RS16995 ← | IS3 family transposase |
| RA | 3,285,580 | A→G | 39.3% | I274T (ATA→ACA) | EO946_RS16995 ← | IS3 family transposase |
| RA | 3,285,647 | C→A | 39.2% | V252L (GTA→TTA) | EO946_RS16995 ← | IS3 family transposase |
| RA | 3,285,713 | G→A | 27.4% | L230L (CTA→TTA) | EO946_RS16995 ← | IS3 family transposase |
| RA | 3,328,921 | G→A | 5.1% | S258S (TCG→TCA) | lutP → | L‑lactate permease LutP |
| RA | 3,447,038 | T→G | 10.4% | N183T (AAC→ACC) | degU ← | two‑component system response regulator DegU |
| RA | 3,496,441 | C→G | 5.8% | L329L (CTG→CTC) | EO946_RS17995 ← | glucosaminidase domain‑containing protein |
| RA | 3,496,459 | C→A | 6.2% | G323G (GGG→GGT) | EO946_RS17995 ← | glucosaminidase domain‑containing protein |
| RA | 3,637,344 | T→A | 7.6% | Y44N (TAC→AAC) | EO946_RS18740 → | DUF2529 domain‑containing protein |
| RA | 3,746,962 | C→A | 6.7% | D36Y (GAT→TAT) | EO946_RS19275 ← | galactokinase |
| RA | 3,790,764 | T→G | 19.9% | N203H (AAC→CAC) | EO946_RS19525 ← | BglG family transcription antiterminator |
| RA | 3,993,028 | G→A | 6.4% | S211L (TCG→TTG) | walK ← | cell wall metabolism sensor histidine kinase WalK |
| RA | 3,994,110 | C→G | 6.0% | V89L (GTC→CTC) | walR ← | cell wall metabolism DNA‑binding response regulator WalR |
| RA | 3,996,851 | A→T | 9.0% | intergenic (‑157/+49) | purA ← / ← EO946_RS20530 | adenylosuccinate synthase/VOC family protein |
| RA | 3,996,891 | G→T | 8.8% | intergenic (‑197/+9) | purA ← / ← EO946_RS20530 | adenylosuccinate synthase/VOC family protein |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP034943 | = 91969 | NA (NA) | 18 (0.070) | 8/250 | NT | NA | intergenic (+131/‑39) | EO946_RS00485/EO946_RS00490 | 16S ribosomal RNA/23S ribosomal RNA |
| ? | NZ_CP034943 | 91973 = | NA (NA) | intergenic (+135/‑35) | EO946_RS00485/EO946_RS00490 | 16S ribosomal RNA/23S ribosomal RNA | |||||