mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | ACB122 | 1,063,304 | 0 | A | C | 54.2% | ‑3.1 / 12.6 | 27 | intergenic (+54/+90) | aroP_1/CJ019_01001 | Aromatic amino acid transport protein AroP/hypothetical protein |
| * | ACB122 | 3,440,363 | 0 | A | C | 53.8% | 7.9 / 27.6 | 39 | A24A (GCA→GCC) | CJ019_03266 | hypothetical protein |
| * | ACB122 | 5,688,637 | 0 | A | C | 43.8% | 24.4 / 12.3 | 50 | S236R (AGC→CGC) | pyrC' | Dihydroorotase‑like protein |
| * | ACB122 | 5,384,408 | 0 | T | G | 35.5% | 35.0 / 11.1 | 31 | intergenic (+529/‑329) | CJ019_05064/CJ019_05067 | putative protein/hypothetical protein |
| * | ACB122 | 2,730,166 | 0 | T | G | 33.9% | 69.5 / 11.3 | 62 | V1336G (GTG→GGG) | CJ019_02576 | hypothetical protein |
| * | ACB122 | 3,063,521 | 0 | T | C | 32.3% | 38.1 / 12.6 | 40 | intergenic (+32/‑322) | adh_2/pqqD_2 | Aldehyde dehydrogenase/PqqA binding protein |
| * | ACB122 | 3,138,367 | 0 | T | G | 32.1% | 72.1 / 17.7 | 56 | F240V (TTT→GTT) | rbsC_2 | Ribose import permease protein RbsC |
| * | ACB122 | 1,348,420 | 0 | C | G | 32.0% | 67.2 / 14.3 | 50 | D4H (GAC→CAC) | CJ019_01261 | hypothetical protein |
| * | ACB122 | 1,348,427 | 0 | C | G | 30.4% | 72.7 / 12.3 | 49 | M1I (ATG→ATC) † | CJ019_01261 | hypothetical protein |
| * | ACB122 | 4,425,087 | 0 | G | C | 29.0% | 51.7 / 11.0 | 31 | intergenic (‑29/‑89) | CJ019_04200/CJ019_04201 | hypothetical protein/hypothetical protein |
| * | ACB122 | 5,384,407 | 0 | C | G | 29.0% | 46.9 / 11.1 | 31 | intergenic (+528/‑330) | CJ019_05064/CJ019_05067 | putative protein/hypothetical protein |
| * | ACB122 | 1,721,869 | 0 | G | C | 26.0% | 87.0 / 11.8 | 50 | V98V (GTC→GTG) | CJ019_01617 | hypothetical protein |
| * | ACB122 | 5,356,512 | 0 | G | C | 25.6% | 84.8 / 11.5 | 43 | L408V (CTG→GTG) | glmM | Phosphoglucosamine mutase |
| * | ACB122 | 2,386,965 | 0 | G | T | 24.3% | 64.4 / 11.0 | 37 | intergenic (+34/+72) | CJ019_02252/dacC_1 | hypothetical protein/D‑alanyl‑D‑alanine carboxypeptidase DacC |
| * | ACB122 | 434,376 | 0 | G | . | 22.7% | 48.5 / 13.2 | 22 | coding (207/1173 nt) | bioF | 8‑amino‑7‑oxononanoate synthase |
| * | ACB122 | 6,038,658 | 0 | C | A | 21.5% | 146.0 / 27.2 | 93 | A37S (GCC→TCC) | puuD_3 | Gamma‑glutamyl‑gamma‑aminobutyrate hydrolasePuuD |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | ACB122 | = 2210779 | 55 (0.890) | 9 (0.150) | 8/258 | 4.6 | 14.2% | coding (345/720 nt) | CJ019_02095 | hypothetical protein |
| ? | ACB122 | = 4480292 | NA (NA) | intergenic (+31/+540) | CJ019_03744/recF_2 | IS66 family transposase ISPpu14/DNA replication and repair protein RecF | |||||
| * | ? | ACB122 | = 2830140 | 5 (0.080) | 3 (0.060) | 3/220 | 6.3 | 31.2% | intergenic (‑35/+148) | gabD1/namA_3 | Succinate‑semialdehyde dehydrogenase [NADP( )]1/NADPH dehydrogenase |
| ? | ACB122 | 2830229 = | 9 (0.170) | intergenic (‑124/+59) | gabD1/namA_3 | Succinate‑semialdehyde dehydrogenase [NADP( )]1/NADPH dehydrogenase | |||||