mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 1,292,848 | 0 | A | T | 70.3% | 138.9 / 265.8 | 294 | noncoding (11/132 nt) | CXP41_RS06830 | RtT sRNA |
| * | NZ_CP025268 | 1,292,810 | 0 | G | A | 62.1% | 50.1 / inf | 391 | noncoding (49/132 nt) | CXP41_RS06830 | RtT sRNA |
| * | NZ_CP025268 | 1,293,000 | 0 | A | G | 58.8% | 68.1 / 297.9 | 258 | noncoding (37/132 nt) | CXP41_RS06835 | RtT sRNA |
| * | NZ_CP025268 | 1,292,991 | 0 | C | T | 56.7% | 83.8 / 277.4 | 263 | noncoding (46/132 nt) | CXP41_RS06835 | RtT sRNA |
| * | NZ_CP025268 | 1,292,982 | 0 | A | G | 49.8% | 38.2 / inf | 264 | noncoding (55/132 nt) | CXP41_RS06835 | RtT sRNA |
| * | NZ_CP025268 | 448,506 | 0 | T | C | 20.2% | 793.4 / 35.4 | 334 | M396V (ATG→GTG) | cyoB | cytochrome o ubiquinol oxidase subunit I |
| Marginal new junction evidence (lowest skew 10 of 237 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP025268 | = 3549238 | 402 (1.340) | 58 (0.230) +21 bp |
24/232 | 5.0 | 15.2% | coding (1519/2085 nt) | malQ | 4‑alpha‑glucanotransferase |
| ? | NZ_CP025268 | 3549260 = | 360 (1.200) | coding (1497/2085 nt) | malQ | 4‑alpha‑glucanotransferase | |||||
| * | ? | NZ_CP025268 | = 2717853 | 388 (1.290) | 20 (0.070) | 13/252 | 8.5 | 5.3% | coding (934/1335 nt) | srmB | ATP‑dependent RNA helicase SrmB |
| ? | NZ_CP025268 | = 2717932 | 354 (1.280) | coding (1013/1335 nt) | srmB | ATP‑dependent RNA helicase SrmB | |||||
| * | ? | NZ_CP025268 | = 1553632 | 190 (0.630) | 10 (0.050) +47 bp |
7/180 | 8.7 | 7.3% | coding (1413/3048 nt) | fdnG | formate dehydrogenase‑N subunit alpha |
| ? | NZ_CP025268 | 1553680 = | 198 (0.660) | coding (1461/3048 nt) | fdnG | formate dehydrogenase‑N subunit alpha | |||||
| * | ? | NZ_CP025268 | = 3024884 | 414 (1.380) | 15 (0.050) | 12/258 | 9.1 | 3.6% | coding (1265/2871 nt) | xdhD | molybdopterin‑dependent oxidoreductase Mo/Fe‑S‑binding subunit |
| ? | NZ_CP025268 | = 3024941 | 404 (1.430) | coding (1322/2871 nt) | xdhD | molybdopterin‑dependent oxidoreductase Mo/Fe‑S‑binding subunit | |||||
| * | ? | NZ_CP025268 | = 4411560 | 317 (1.050) | 15 (0.050) | 11/254 | 9.3 | 4.8% | coding (360/732 nt) | rlmB | 23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB |
| ? | NZ_CP025268 | = 4411623 | 299 (1.070) | coding (423/732 nt) | rlmB | 23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB | |||||
| * | ? | NZ_CP025268 | 3216851 = | 281 (0.930) | 14 (0.050) | 11/254 | 9.3 | 5.0% | coding (327/765 nt) | nfeF | NADPH‑dependent ferric chelate reductase |
| ? | NZ_CP025268 | 3216933 = | 269 (0.970) | coding (245/765 nt) | nfeF | NADPH‑dependent ferric chelate reductase | |||||
| * | ? | NZ_CP025268 | 4544596 = | 44 (0.150) | 13 (0.050) | 10/256 | 9.8 | 14.1% | intergenic (+49/‑433) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
| ? | NZ_CP025268 | 4544910 = | 117 (0.420) | intergenic (+363/‑119) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA | |||||
| * | ? | NZ_CP025268 | = 3545337 | 330 (1.100) | 11 (0.040) | 9/256 | 10.2 | 3.4% | coding (194/771 nt) | bioH | pimeloyl‑ACP methyl ester esterase BioH |
| ? | NZ_CP025268 | = 3545378 | 320 (1.140) | coding (153/771 nt) | bioH | pimeloyl‑ACP methyl ester esterase BioH | |||||
| * | ? | NZ_CP025268 | 3382524 = | 210 (0.700) | 15 (0.050) | 9/256 | 10.2 | 7.2% | coding (1097/1368 nt) | degQ | serine endoprotease DegQ |
| ? | NZ_CP025268 | 3382554 = | 193 (0.690) | coding (1127/1368 nt) | degQ | serine endoprotease DegQ | |||||
| * | ? | NZ_CP025268 | 3242791 = | 363 (1.210) | 11 (0.040) | 9/256 | 10.2 | 3.0% | coding (1209/1488 nt) | uxaA | altronate dehydratase |
| ? | NZ_CP025268 | 3242853 = | 369 (1.310) | coding (1147/1488 nt) | uxaA | altronate dehydratase | |||||