breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
Predicted mutations | |||||
---|---|---|---|---|---|
evidence | position | mutation | annotation | gene | description |
RA | 124,938 | A→G | I15V (ATT→GTT) | pdhR → | transcriptional regulator of pyruvate dehydrogenase complex |
RA | 433,525 | T→A | I7N (ATC→AAC) | hupB → | HU, DNA‑binding transcriptional regulator, beta subunit |
RA | 475,161 | C→A | G49C (GGC→TGC) | ybaL ← | predicted transporter with NAD(P)‑binding Rossmann‑fold domain |
RA | 1,329,516 | C→T | H33Y (CAC→TAC) | topA → | DNA topoisomerase I |
JC | 1,733,297 | (CGTATGAA)1→2 | coding (333/1413 nt) | pykF → | pyruvate kinase |
RA | 2,131,466 | (A)9→8 | intergenic (‑125/+175) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase |
RA | 2,164,658 | A→T | I395N (ATC→AAC) | yehU ← | predicted sensory kinase in two‑component system with YehT |
RA | 2,193,779 | G→T | L143I (CTT→ATT) | yeiB ← | conserved inner membrane protein |
RA | 2,213,517 | C→T | A13T (GCT→ACT) | fruK ← | 1‑phosphofructokinase |
RA | 2,655,307 | T→C | N92S (AAT→AGT) | clpB ← | protein disaggregation chaperone |
JC | 3,014,099 | (ACAGGC)3→4 | coding (680/1137 nt) | ECB_02815 → | Capsule polysaccharide export inner‑membrane protein kpsE |
RA | 3,145,726 | G→A | intergenic (+57/‑138) | dnaG → / → rpoD | DNA primase/RNA polymerase sigma factor |
RA | 3,326,566 | A→T | D67E (GAT→GAA) | mreD ← | cell wall structural complex MreBCD transmembrane component MreD |
RA | 3,762,741 | A→T | K662I (AAA→ATA) | spoT → | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
RA | 3,875,632 | (T)7→8 | intergenic (‑66/+287) | glmU ← / ← atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
MC JC | 3,894,997 | Δ6,934 bp | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
RA | 4,163,752 | T→A | I966N (ATC→AAC) | rpoB → | DNA‑directed RNA polymerase subunit beta |
JC JC | 4,524,522 | IS186 (+) +6 bp | coding (494‑499/549 nt) | fimA → | major type 1 subunit fimbrin (pilin) |