mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 1,875,483 | 0 | G | C | 43.5% | 95.5 / 184.9 | 124 | intergenic (+156/‑28) | yeaB/sdaA | predicted NUDIX hydrolase/L‑serine deaminase I |
| * | REL606 | 3,492,082 | 0 | T | G | 37.7% | 72.3 / 30.3 | 53 | V490G (GTG→GGG) | glpD | sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding |
| * | REL606 | 1,484,105 | 0 | A | G | 34.0% | 89.6 / 27.7 | 53 | G55G (GGA→GGG) | ydcU | predicted spermidine/putrescine transporter subunit |
| * | REL606 | 1,747,903 | 0 | G | T | 33.0% | 183.0 / 86.1 | 91 | A8S (GCA→TCA) | ydiL | hypothetical protein |
| * | REL606 | 1,795,650 | 0 | A | C | 31.6% | 118.1 / 13.0 | 57 | V39G (GTG→GGG) | celF | cryptic phospho‑beta‑glucosidase, NAD(P)‑binding |
| * | REL606 | 4,393,061 | 0 | T | G | 28.2% | 84.5 / 12.3 | 39 | V211G (GTG→GGG) | aidB | isovaleryl CoA dehydrogenase |
| * | REL606 | 3,691,844 | 0 | T | G | 27.1% | 106.2 / 10.5 | 48 | N226T (AAC→ACC) | yiaY | predicted Fe‑containing alcohol dehydrogenase |
| * | REL606 | 3,921,703 | 0 | T | G | 26.5% | 148.1 / 11.3 | 68 | intergenic (‑88/+111) | ppiC/ECB_03654 | peptidyl‑prolyl cis‑trans isomerase C (rotamase C)/hypothetical protein |
| * | REL606 | 1,688,990 | 0 | A | C | 26.0% | 113.1 / 20.4 | 50 | T92P (ACC→CCC) | nth | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) |
| * | REL606 | 716,832 | 0 | T | G | 25.0% | 117.9 / 11.4 | 48 | A31A (GCA→GCC) | ECB_00663 | hypothetical protein |
| * | REL606 | 1,100,865 | 0 | A | T | 25.0% | 92.4 / 11.3 | 44 | Y402F (TAT→TTT) | ycdB | hypothetical protein |
| * | REL606 | 3,235,452 | 0 | T | G | 25.0% | 64.5 / 10.5 | 32 | F85V (TTT→GTT) | yhbQ | hypothetical protein |
| * | REL606 | 4,043,426 | 0 | T | A | 24.6% | 160.5 / 14.6 | 65 | I200F (ATT→TTT) | yihO | predited transporter |
| * | REL606 | 4,169,232 | 0 | A | T | 23.5% | 169.1 / 14.7 | 69 | intergenic (+48/‑165) | rpoC/htrC | DNA‑directed RNA polymerase subunit beta'/heat shock protein |
| Marginal new junction evidence (lowest skew 10 of 68 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 3529112 | 85 (1.360) | 4 (0.110) +30 bp |
4/90 | 5.1 | 6.5% | intergenic (+71/+128) | yhhK/livJ | hypothetical protein/leucine/isoleucine/valine transporter subunit |
| ? | REL606 | 4353277 = | 110 (1.760) | intergenic (‑332/+63) | yjeJ/yjeK | hypothetical protein/predicted lysine aminomutase | |||||
| * | ? | REL606 | = 3529112 | 85 (1.360) | 4 (0.110) +30 bp |
4/90 | 5.1 | 7.4% | intergenic (+71/+128) | yhhK/livJ | hypothetical protein/leucine/isoleucine/valine transporter subunit |
| ? | REL606 | = 3671450 | 83 (1.330) | intergenic (+36/+115) | avtA/yiaI | valine‑pyruvate transaminase/predicted hydrogenase, 4Fe‑4S ferredoxin‑type component | |||||
| * | ? | REL606 | = 3529112 | 85 (1.360) | 4 (0.110) +30 bp |
4/90 | 5.1 | 7.6% | intergenic (+71/+128) | yhhK/livJ | hypothetical protein/leucine/isoleucine/valine transporter subunit |
| ? | REL606 | 3569965 = | 78 (1.250) | intergenic (+135/+109) | pitA/yhiO | phosphate transporter, low‑affinity/universal stress protein UspB | |||||
| * | ? | REL606 | 2898279 = | 72 (1.150) | 4 (0.110) +30 bp |
4/90 | 5.1 | 6.9% | intergenic (+131/+90) | yqeA/yqeB | predicted amino acid kinase/conserved protein with NAD(P)‑binding Rossman fold |
| ? | REL606 | 4353277 = | 110 (1.760) | intergenic (‑332/+63) | yjeJ/yjeK | hypothetical protein/predicted lysine aminomutase | |||||
| * | ? | REL606 | 2898279 = | 72 (1.150) | 4 (0.110) +30 bp |
4/90 | 5.1 | 8.0% | intergenic (+131/+90) | yqeA/yqeB | predicted amino acid kinase/conserved protein with NAD(P)‑binding Rossman fold |
| ? | REL606 | = 3671450 | 83 (1.330) | intergenic (+36/+115) | avtA/yiaI | valine‑pyruvate transaminase/predicted hydrogenase, 4Fe‑4S ferredoxin‑type component | |||||
| * | ? | REL606 | 2898279 = | 72 (1.150) | 4 (0.110) +30 bp |
4/90 | 5.1 | 8.2% | intergenic (+131/+90) | yqeA/yqeB | predicted amino acid kinase/conserved protein with NAD(P)‑binding Rossman fold |
| ? | REL606 | 3569965 = | 78 (1.250) | intergenic (+135/+109) | pitA/yhiO | phosphate transporter, low‑affinity/universal stress protein UspB | |||||
| * | ? | REL606 | = 2840545 | 111 (1.770) | 4 (0.110) +30 bp |
4/90 | 5.1 | 6.4% | intergenic (‑84/+155) | ygdL/mltA | hypothetical protein/membrane‑bound lytic murein transglycosylase A |
| ? | REL606 | = 3529112 | 85 (1.360) | intergenic (+71/+128) | yhhK/livJ | hypothetical protein/leucine/isoleucine/valine transporter subunit | |||||
| * | ? | REL606 | = 2840545 | 111 (1.770) | 4 (0.110) +30 bp |
4/90 | 5.1 | 6.8% | intergenic (‑84/+155) | ygdL/mltA | hypothetical protein/membrane‑bound lytic murein transglycosylase A |
| ? | REL606 | 2898279 = | 72 (1.150) | intergenic (+131/+90) | yqeA/yqeB | predicted amino acid kinase/conserved protein with NAD(P)‑binding Rossman fold | |||||
| * | ? | REL606 | 2806881 = | 67 (1.070) | 4 (0.110) +30 bp |
4/90 | 5.1 | 8.1% | intergenic (+140/+93) | barA/gudD | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY/(D)‑glucarate dehydratase 1 |
| ? | REL606 | = 3529112 | 85 (1.360) | intergenic (+71/+128) | yhhK/livJ | hypothetical protein/leucine/isoleucine/valine transporter subunit | |||||
| * | ? | REL606 | 2806881 = | 67 (1.070) | 4 (0.110) +30 bp |
4/90 | 5.1 | 8.8% | intergenic (+140/+93) | barA/gudD | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY/(D)‑glucarate dehydratase 1 |
| ? | REL606 | 2898279 = | 72 (1.150) | intergenic (+131/+90) | yqeA/yqeB | predicted amino acid kinase/conserved protein with NAD(P)‑binding Rossman fold | |||||