mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 3,492,082 | 0 | T | G | 37.3% | 100.1 / 23.0 | 60 | V490G (GTG→GGG) | glpD | sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding |
| * | REL606 | 2,296,329 | 0 | A | C | 37.1% | 131.0 / 31.8 | 70 | intergenic (‑149/‑66) | inaA/yfaH | hypothetical protein/hypothetical protein |
| * | REL606 | 1,004,106 | 0 | A | C | 36.6% | 148.0 / 14.5 | 71 | intergenic (‑32/+570) | ompF/asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl‑tRNA synthetase |
| * | REL606 | 1,882,526 | 0 | T | G | 36.4% | 123.5 / 17.7 | 77 | I21S (ATT→AGT) | manZ | mannose‑specific enzyme IID component of PTS |
| * | REL606 | 1,688,990 | 0 | A | C | 31.4% | 57.5 / 13.3 | 35 | T92P (ACC→CCC) | nth | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) |
| * | REL606 | 4,574,252 | 0 | T | G | 30.9% | 89.6 / 13.3 | 42 | S5S (TCA→TCC) | hpaX | hypothetical 4‑hydroxyphenylacetate permease |
| * | REL606 | 4,393,061 | 0 | T | G | 29.5% | 133.4 / 17.3 | 61 | V211G (GTG→GGG) | aidB | isovaleryl CoA dehydrogenase |
| * | REL606 | 3,921,703 | 0 | T | G | 26.3% | 120.0 / 10.2 | 57 | intergenic (‑88/+111) | ppiC/ECB_03654 | peptidyl‑prolyl cis‑trans isomerase C (rotamase C)/hypothetical protein |
| * | REL606 | 1,747,903 | 0 | G | T | 25.9% | 211.5 / 59.9 | 85 | A8S (GCA→TCA) | ydiL | hypothetical protein |
| * | REL606 | 4,322,565 | 0 | T | G | 23.4% | 166.0 / 14.8 | 64 | G157G (GGT→GGG) | melB | melibiose:sodium symporter |
| * | REL606 | 2,568,967 | 0 | A | C | 20.0% | 155.2 / 10.6 | 62 | G1380G (GGT→GGG) | yfhM | hypothetical protein |
| Marginal new junction evidence (lowest skew 10 of 15 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2039283 = | 93 (1.490) | 4 (0.070) | 4/142 | 6.3 | 4.7% | coding (412/747 nt) | wbbA | putative glycosyltransferase WbbA |
| ? | REL606 | 2039547 = | 74 (1.250) | coding (148/747 nt) | wbbA | putative glycosyltransferase WbbA | |||||
| * | ? | REL606 | = 4251744 | 88 (1.410) | 3 (0.050) | 3/136 | 6.6 | 3.8% | coding (1060/2823 nt) | uvrA | excinuclease ABC subunit A |
| ? | REL606 | = 4251997 | 71 (1.250) | coding (807/2823 nt) | uvrA | excinuclease ABC subunit A | |||||
| * | ? | REL606 | 2037554 = | 68 (1.090) | 3 (0.050) | 3/136 | 6.6 | 4.9% | coding (577/1176 nt) | wzy | O antigen polymerase (Wzy) |
| ? | REL606 | 2037718 = | 54 (0.950) | coding (413/1176 nt) | wzy | O antigen polymerase (Wzy) | |||||
| * | ? | REL606 | = 2037392 | 77 (1.230) | 3 (0.050) | 3/136 | 6.6 | 4.5% | coding (739/1176 nt) | wzy | O antigen polymerase (Wzy) |
| ? | REL606 | = 2037686 | 58 (1.020) | coding (445/1176 nt) | wzy | O antigen polymerase (Wzy) | |||||
| * | ? | REL606 | 2035133 = | 73 (1.170) | 3 (0.050) | 3/134 | 6.6 | 3.4% | coding (724/768 nt) | wbbD | putative glycosyltransferase WbbD |
| ? | REL606 | 2035565 = | 103 (1.850) | coding (292/768 nt) | wbbD | putative glycosyltransferase WbbD | |||||
| * | ? | REL606 | = 541861 | 99 (1.580) | 4 (0.070) | 3/134 | 6.6 | 4.5% | coding (1070/1527 nt) | ybcK | predicted recombinase |
| ? | REL606 | = 542081 | 81 (1.450) | coding (1290/1527 nt) | ybcK | predicted recombinase | |||||
| * | ? | REL606 | = 4327459 | 152 (2.430) | 6 (0.100) | 3/138 | 6.7 | 4.1% | coding (1/1341 nt) | dcuB | C4‑dicarboxylate antiporter |
| ? | REL606 | = 4327699 | 141 (2.450) | intergenic (‑240/+331) | dcuB/dcuR | C4‑dicarboxylate antiporter/DNA‑binding response regulator in two‑component regulatory system with DcuS | |||||
| * | ? | REL606 | 3021153 = | 89 (1.420) | 3 (0.050) | 3/138 | 6.7 | 3.6% | coding (331/933 nt) | ECB_02820 | hypothetical protein |
| ? | REL606 | 3021584 = | 78 (1.360) | coding (1101/1140 nt) | ECB_02821 | hypothetical protein | |||||
| * | ? | REL606 | 4459858 = | 179 (2.860) | 3 (0.050) | 3/140 | 6.8 | 1.9% | coding (1145/1653 nt) | yjgL | hypothetical protein |
| ? | REL606 | 4460139 = | 142 (2.430) | coding (1426/1653 nt) | yjgL | hypothetical protein | |||||
| * | ? | REL606 | = 4340058 | 152 (2.430) | 4 (0.070) | 3/142 | 6.8 | 2.7% | coding (598/1539 nt) | cadC | DNA‑binding transcriptional activator |
| ? | REL606 | = 4340391 | 144 (2.430) | coding (265/1539 nt) | cadC | DNA‑binding transcriptional activator | |||||