breseq  version 0.33.1  revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence seq id position mutation freq annotation gene description
RA BX571857 431,505 T→C 9.2% S77P (TCA→CCA)  SAS0387 → exotoxin
RA BX571857 605,157 T→C 6.0% D1007D (GAT→GAC SAS0521 → bone sialoprotein‑binding protein
RA BX571857 1,252,438 T→C 100% intergenic (+358/‑77) SAS1171 → / → SAS1172 signal recognition particle protein/30S ribosomal protein S16
RA BX571857 1,477,356 G→A 6.8% pseudogene (19605/21246 nt) ebh ← very large surface anchored protein (pseudogene)
RA BX571857 1,868,342 G→A 100% G129D (GGT→GAT)  SAS1720 → putative membrane protein
RA BX571857 1,937,435 A→G 9.2% noncoding (62/90 nt) tRNA Ser anticodon TGA_ Cove score 61.04 ← tRNA‑Ser
RA BX571857 2,004,992 G→A 33.3% intergenic (‑155/+50) SAS1840 ← / ← SAS1841 putative sodium:sulfate symporter/hypothetical protein
RA BX571857 2,412,116 C→A 36.7% V133L (GTG→TTG)  SAS2256 ← putative malate:quinone oxidoreductase 1
RA BX571857 2,553,454 C→A 28.4% P7P (CCG→CCT SAS2383 ← putative cell wall‑anchored protein
RA BX571857 2,641,524 A→G 8.0% D114D (GAT→GAC SAS2461 ← putative glyoxalase
RA BX571858 20,628:1 +G 100% coding (288/306 nt) pSAS24 → putative exported protein

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ BX571858 20652 20652 1 447 [0] [0] NA pSAS24/– putative exported protein/–

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? BX571857 980997 =NA (NA)19 (0.130) 16/118 NT NA noncoding (1/27 nt) Repeat flanking prophage phiSa4(476) Repeat flanking prophage phiSa4(476)
?BX571857 = 1025750 NA (NA)intergenic (+519/‑57) SAS0954/SAS0955 amidase/putative protease
* ? BX571858 1 =0 (0.000)397 (1.150) 136/170 NT 100% intergenic (–/‑11) –/pSAS01 –/putative ABC transporter ATP binding protein
?BX571858 = 20651 0 (0.000)intergenic (+5/–) pSAS24/– putative exported protein/–