mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | BX571857 | 391,456 | C→A | 6.0% | intergenic (+74/+192) | SAS0343 → / ← SAS0344 | 30S ribosomal protein S18/hypothetical protein |
| RA | BX571857 | 431,505 | T→C | 7.2% | S77P (TCA→CCA) | SAS0387 → | exotoxin |
| RA | BX571857 | 605,157 | T→C | 6.8% | D1007D (GAT→GAC) | SAS0521 → | bone sialoprotein‑binding protein |
| RA | BX571857 | 1,140,755 | A→T | 42.3% | E242V (GAA→GTA) | SAS1067 → | putative transport system extracellular binding lipoprotein |
| RA | BX571857 | 1,252,438 | T→C | 100% | intergenic (+358/‑77) | SAS1171 → / → SAS1172 | signal recognition particle protein/30S ribosomal protein S16 |
| JC | BX571857 | 1,332,856 | 30 bp→30 bp | 18.8% | coding (185‑214/1239 nt) | SAS1239 → | conserved hypothetical protein |
| RA | BX571857 | 1,868,342 | G→A | 100% | G129D (GGT→GAT) | SAS1720 → | putative membrane protein |
| RA | BX571857 | 2,200,113 | G→A | 39.7% | S53S (AGC→AGT) | SAS2045 ← | putative membrane protein |
| RA | BX571857 | 2,407,915 | G→A | 41.4% | E35K (GAA→AAA) | SAS2252 → | response regulator protein |
| RA | BX571857 | 2,700,221 | A→G | 7.2% | D749D (GAT→GAC) | SAS2516 ← | fibrinogen and keratin‑10 binding surface anchored protein |
| RA | BX571857 | 2,725,891 | G→A | 35.5% | A2V (GCT→GTT) | SAS2532 ← | putative surface anchored protein |
| RA | BX571857 | 2,778,123 | C→T | 5.6% | A1049T (GCA→ACA) | SAS2578 ← | collagen adhesin precursor |
| RA | BX571858 | 20,628:1 | +G | 100% | coding (288/306 nt) | pSAS24 → | putative exported protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | BX571858 | 20652 | 20652 | 1 | 581 [0] | [0] NA | pSAS24/– | putative exported protein/– |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | BX571857 | 980997 = | NA (NA) | 15 (0.100) | 14/118 | NT | NA | noncoding (1/27 nt) | Repeat flanking prophage phiSa4(476) | Repeat flanking prophage phiSa4(476) |
| ? | BX571857 | = 1025750 | NA (NA) | intergenic (+519/‑57) | SAS0954/SAS0955 | amidase/putative protease | |||||
| * | ? | BX571858 | 1 = | 0 (0.000) | 507 (1.100) | 143/170 | NT | 100% | intergenic (–/‑11) | –/pSAS01 | –/putative ABC transporter ATP binding protein |
| ? | BX571858 | = 20651 | 0 (0.000) | intergenic (+5/–) | pSAS24/– | putative exported protein/– | |||||