mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 53,376 | G→A | 6.9% | P14L (CCC→CTC) | pdxA ← | 4‑hydroxy‑L‑threonine phosphate dehydrogenase, NAD‑dependent |
| RA | 53,379 | T→C | 6.6% | E13G (GAG→GGG) | pdxA ← | 4‑hydroxy‑L‑threonine phosphate dehydrogenase, NAD‑dependent |
| RA | 83,587 | A→C | 7.1% | intergenic (‑58/+35) | leuA ← / ← leuL | 2‑isopropylmalate synthase/leu operon leader peptide |
| RA | 83,590 | G→T | 6.8% | intergenic (‑61/+32) | leuA ← / ← leuL | 2‑isopropylmalate synthase/leu operon leader peptide |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 299,652 | T→A | 6.1% | E428V (GAG→GTG) | paoC ← | PaoABC aldehyde oxidoreductase, Moco‑containing subunit |
| RA | 328,486 | T→C | 5.3% | N83S (AAT→AGT) | betB ← | betaine aldehyde dehydrogenase, NAD‑dependent |
| RA | 360,352 | A→G | 6.3% | T121A (ACG→GCG) | cynX → | putative cyanate transporter |
| RA | 434,375 | A→G | 5.7% | A307A (GCA→GCG) | ribD → | fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5‑amino‑6‑(5‑phosphoribosylamino) uracil reductase |
| RA | 511,475 | A→G | 5.4% | intergenic (‑96/‑166) | copA ← / → glsA | copper transporter/glutaminase 1 |
| RA | 538,646 | C→T | 6.8% | A338A (GCC→GCT) | ybbW → | putative allantoin transporter |
| RA | 556,492 | T→C | 7.1% | K21R (AAA→AGA) | ybcI ← | DUF457 family inner membrane protein |
| RA | 778,380 | T→A | 5.1% | L214Q (CTG→CAG) | tolB → | periplasmic protein |
| RA | 779,901 | A→G | 5.9% | S102G (AGC→GGC) | ybgF → | periplasmic TolA‑binding protein |
| RA | 808,398 | A→G | 6.0% | L287P (CTC→CCC) | bioA ← | 7,8‑diaminopelargonic acid synthase, PLP‑dependent |
| RA | 819,215 | C→T | 5.3% | N56N (AAC→AAT) | moaD → | molybdopterin synthase, small subunit |
| RA | 893,111 | A→T | 5.4% | D52V (GAT→GTT) | ybjN → | negative regulator of motility; multicopy suppressor of coaA(Ts) |
| RA | 933,515 | T→C | 7.0% | W98R (TGG→CGG) | ftsK → | DNA translocase at septal ring sorting daughter chromsomes |
| RA | 1,010,169 | C→T | 5.0% | A69V (GCG→GTG) | uup → | replication regulatory ABC‑F family DNA‑binding ATPase |
| RA | 1,067,130 | T→C | 5.2% | A193A (GCA→GCG) | wrbA ← | NAD(P)H:quinone oxidoreductase |
| RA | 1,068,774 | C→T | 7.5% | A356T (GCA→ACA) | rutG ← | pyrimidine permease |
| RA | 1,112,578 | T→C | 5.6% | A572A (GCT→GCC) | opgH → | OPG biosynthetic ACP‑dependent transmembrane UDP‑glucose beta‑1,2 glycosyltransferase; nutrient‑dependent cell size regulator, FtsZ assembly antagonist |
| RA | 1,287,009 | A→T | 11.9% | intergenic (+483/+57) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| JC JC | 1,293,032 | IS1 (–) +8 bp | 100% | intergenic (‑110/‑488) | hns ← / → tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| RA | 1,294,583 | G→A | 8.1% | pseudogene (410/567 nt) | insZ ← | pseudogene, transposase homolog |
| RA | 1,295,598 | T→C | 5.4% | T842A (ACC→GCC) | adhE ← | fused acetaldehyde‑CoA dehydrogenase/iron‑dependent alcohol dehydrogenase/pyruvate‑formate lyase deactivase |
| MC JC | 1,299,499 | Δ1,199 bp | 100% | intergenic (+254/‑485) | ychE → / → oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| RA | 1,315,800 | A→G | 5.2% | intergenic (‑30/+56) | yciF ← / ← yciG | putative rubrerythrin/ferritin‑like metal‑binding protein/KGG family protein |
| RA | 1,315,803 | C→T | 6.4% | intergenic (‑33/+53) | yciF ← / ← yciG | putative rubrerythrin/ferritin‑like metal‑binding protein/KGG family protein |
| RA | 1,332,366 | C→T | 6.2% | A440V (GCG→GTG) | topA → | DNA topoisomerase I, omega subunit |
| JC JC | 1,335,762 | IS5 (–) +4 bp | 100% | intergenic (+304/‑66) | yciX → / → acnA | uncharacterized protein/aconitate hydratase 1; aconitase A |
| RA | 1,388,549 | G→A | 6.1% | P88L (CCG→CTG) | tpx ← | lipid hydroperoxide peroxidase |
| RA | 1,419,711 | T→C | 6.3% | intergenic (‑255/+54) | ydaG ← / ← racR | Rac prophage; uncharacterized protein/Rac prophage; putative DNA‑binding transcriptional regulator |
| RA | 1,429,021 | T→A | 6.1% | intergenic (+37/‑28) | lomR → / → stfR | pseudogene, Rac prophage lom homolog;Phage or Prophage Related; interrupted by IS5 and N‑ter deletion/Rac prophage; putative tail fiber protein |
| RA | 1,429,022 | T→A | 6.3% | intergenic (+38/‑27) | lomR → / → stfR | pseudogene, Rac prophage lom homolog;Phage or Prophage Related; interrupted by IS5 and N‑ter deletion/Rac prophage; putative tail fiber protein |
| RA | 1,429,024 | A→C | 6.1% | intergenic (+40/‑25) | lomR → / → stfR | pseudogene, Rac prophage lom homolog;Phage or Prophage Related; interrupted by IS5 and N‑ter deletion/Rac prophage; putative tail fiber protein |
| RA | 1,436,497 | C→A | 5.9% | G133C (GGC→TGC) | ompN ← | outer membrane pore protein N, non‑specific |
| RA | 1,484,651 | C→T | 5.8% | R531C (CGC→TGC) | hrpA → | putative ATP‑dependent helicase |
| RA | 1,698,695 | A→G | 6.7% | V162V (GTT→GTC) | malI ← | transcriptional repressor of Mal regulon |
| RA | 1,761,309 | C→T | 7.7% | V161V (GTG→GTA) | sufD ← | component of SufBCD Fe‑S cluster assembly scaffold |
| RA | 1,779,211 | G→C | 5.6% | P31A (CCA→GCA) | ydiP ← | putative DNA‑binding transcriptional regulator |
| RA | 1,806,380 | T→C | 5.9% | I4T (ATC→ACC) | pfkB → | 6‑phosphofructokinase II |
| RA | 1,820,565 | A→G | 6.1% | I217T (ATC→ACC) | chbC ← | N,N'‑diacetylchitobiose‑specific enzyme IIC component of PTS |
| RA | 1,829,556 | T→C | 5.4% | E60G (GAA→GGA) | astD ← | succinylglutamic semialdehyde dehydrogenase |
| RA | 1,846,605 | A→G | 5.5% | L119P (CTG→CCG) | topB ← | DNA topoisomerase III |
| RA | 1,853,342 | G→A | 5.6% | A213V (GCA→GTA) | ydjE ← | putative MFS sugar transporter, membrane protein |
| RA | 1,860,504 | C→A | 6.6% | G277* (GGA→TGA) | ydjL ← | putative Zn‑dependent NAD(P)‑binding oxidoreductase |
| RA | 1,888,807 | G→A | 5.0% | L314L (CTG→TTG) | fadD ← | acyl‑CoA synthetase (long‑chain‑fatty‑acid‑‑CoA ligase) |
| RA | 1,920,826 | G→A | 6.6% | V202M (GTG→ATG) | rsmF → | 16S rRNA m(5)C1407 methyltransferase, SAM‑dependent |
| RA | 1,935,902 | G→T | 5.2% | A138D (GCT→GAT) | zwf ← | glucose‑6‑phosphate 1‑dehydrogenase |
| RA | 1,961,207 | C→T | 5.5% | T382T (ACC→ACT) | argS → | arginyl‑tRNA synthetase |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
| JC JC | 1,979,486 | IS5 (+) +4 bp | 100% | intergenic (‑271/‑264) | insA ← / → uspC | IS1 repressor TnpA/universal stress protein |
| RA | 1,980,240 | C→A | 6.7% | S458I (AGC→ATC) ‡ | otsA ← | trehalose‑6‑phosphate synthase |
| RA | 1,980,241 | T→A | 6.8% | S458C (AGC→TGC) ‡ | otsA ← | trehalose‑6‑phosphate synthase |
| RA | 1,980,242 | T→G | 6.9% | R457R (CGA→CGC) | otsA ← | trehalose‑6‑phosphate synthase |
| RA | 1,985,112 | C→G | 9.3% | intergenic (‑43/+27) | araG ← / ← araF | L‑arabinose ABC transporter ATPase/L‑arabinose ABC transporter periplasmic binding protein |
| RA | 2,017,871 | G→A | 5.5% | A440T (GCG→ACG) | fliI → | flagellum‑specific ATP synthase |
| RA | 2,100,879 | A→G | 5.5% | G130G (GGT→GGC) | gnd ← | 6‑phosphogluconate dehydrogenase, decarboxylating |
| RA | 2,121,394 | A→T | 6.3% | I54N (ATT→AAT) | wcaJ ← | colanic biosynthesis UDP‑glucose lipid carrier transferase |
| RA | 2,132,787 | A→C | 100% | I204S (ATC→AGC) | wcaA ← | putative glycosyl transferase |
| RA | 2,169,100 | A→G | 5.6% | N130S (AAC→AGC) | yegS → | phosphatidylglycerol kinase, metal‑dependent |
| RA | 2,173,361 | Δ2 bp | 100% | pseudogene (1‑2/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,204,390 | T→C | 5.7% | intergenic (+101/‑206) | yehK → / → yehL | uncharacterized protein/putative hexameric AAA+ MoxR family ATPase |
| RA | 2,216,060 | C→T | 5.0% | A139A (GCG→GCA) | yehW ← | putative ABC transporter permease |
| RA | 2,294,591 | C→T | 5.2% | G105D (GGC→GAC) | ccmF ← | heme lyase, CcmF subunit |
| RA | 2,304,649 | C→T | 23.5% | intergenic (+256/+459) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,307,304 | G→T | 5.9% | L438I (CTT→ATT) | yojI ← | microcin J25 efflux ABC transporter permease/ATPase |
| RA | 2,316,369 | G→A | 5.5% | G65S (GGC→AGC) | rcsB → | response regulator in two‑component regulatory system with RcsC and YojN |
| RA | 2,364,995 | T→G | 5.0% | intergenic (+16/+23) | nudI → / ← ais | nucleoside triphosphatase/putative LPS core heptose(II)‑phosphate phosphatase |
| RA | 2,364,998 | C→A | 5.1% | intergenic (+19/+20) | nudI → / ← ais | nucleoside triphosphatase/putative LPS core heptose(II)‑phosphate phosphatase |
| RA | 2,409,215 | G→A | 5.5% | P118P (CCG→CCA) | yfbR → | 5'‑nucleotidase |
| RA | 2,433,237 | C→T | 5.5% | P230P (CCG→CCA) | accD ← | acetyl‑CoA carboxylase, beta (carboxyltransferase) subunit |
| RA | 2,525,907 | G→A | 7.0% | intergenic (+16/+23) | yfeN → / ← yfeR | putative outer membrane protein/transcriptional regulator of yefH |
| RA | 2,525,908 | C→G | 7.8% | intergenic (+17/+22) | yfeN → / ← yfeR | putative outer membrane protein/transcriptional regulator of yefH |
| RA | 2,556,903 | A→G | 7.5% | L132P (CTC→CCC) | eutC ← | ethanolamine ammonia‑lyase, small subunit (light chain) |
| RA | 2,560,996 | G→T | 19.3% | intergenic (+98/‑372) | yffL → / → yffM | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
| RA | 2,632,586 | G→C | 5.0% | intergenic (‑51/+18) | guaA ← / ← guaB | GMP synthetase (glutamine aminotransferase)/IMP dehydrogenase |
| RA | 2,671,594 | G→A | 5.2% | A124T (GCA→ACA) | hcaB → | 2,3‑dihydroxy‑2,3‑dihydrophenylpropionate dehydrogenase |
| RA | 2,914,929 | G→A | 5.1% | L24L (CTC→CTT) | rlmD ← | 23S rRNA m(5)U1939 methyltransferase, SAM‑dependent |
| RA | 2,972,260 | G→C | 5.7% | V222L (GTC→CTC) | tas → | putative NADP(H)‑dependent aldo‑keto reductase |
| RA | 3,078,568 | A→G | 5.9% | F98L (TTC→CTC) | cmtA ← | putative mannitol‑specific PTS IIB and IIC components |
| RA | 3,094,906 | T→C | 5.3% | I59V (ATA→GTA) | yggR ← | putative PilT family AAA+ ATPase |
| RA | 3,096,244 | G→A | 5.0% | R142H (CGC→CAC) | yggT → | putative inner membrane protein; compensates for loss in K+ uptake |
| RA | 3,105,253 | T→A | 5.3% | L274Q (CTG→CAG) | mltC → | membrane‑bound lytic murein transglycosylase C |
| RA | 3,210,894 | T→C | 5.5% | Y38Y (TAT→TAC) | rpsU → | 30S ribosomal subunit protein S21 |
| RA | 3,214,951 | T→G | 6.7% | intergenic (+63/+16) | rpoD → / ← mug | RNA polymerase, sigma 70 (sigma D) factor/G/U mismatch‑specific DNA glycosylase; xanthine DNA glycosylase |
| RA | 3,214,952 | T→A | 6.2% | intergenic (+64/+15) | rpoD → / ← mug | RNA polymerase, sigma 70 (sigma D) factor/G/U mismatch‑specific DNA glycosylase; xanthine DNA glycosylase |
| RA | 3,214,953 | T→A | 6.2% | intergenic (+65/+14) | rpoD → / ← mug | RNA polymerase, sigma 70 (sigma D) factor/G/U mismatch‑specific DNA glycosylase; xanthine DNA glycosylase |
| RA | 3,214,954 | T→A | 6.7% | intergenic (+66/+13) | rpoD → / ← mug | RNA polymerase, sigma 70 (sigma D) factor/G/U mismatch‑specific DNA glycosylase; xanthine DNA glycosylase |
| RA | 3,214,955 | C→A | 6.8% | intergenic (+67/+12) | rpoD → / ← mug | RNA polymerase, sigma 70 (sigma D) factor/G/U mismatch‑specific DNA glycosylase; xanthine DNA glycosylase |
| RA | 3,282,866 | T→C | 6.0% | A297A (GCT→GCC) | agaS → | tagatose‑6‑phosphate ketose/aldose isomerase |
| RA | 3,368,180 | A→G | 5.5% | T118T (ACA→ACG) | yhcG → | DUF1016 family protein in the PD‑(D/E)XK nuclease superfamily |
| RA | 3,368,181 | C→G | 5.5% | P119A (CCG→GCG) ‡ | yhcG → | DUF1016 family protein in the PD‑(D/E)XK nuclease superfamily |
| RA | 3,368,182 | C→T | 5.4% | P119L (CCG→CTG) ‡ | yhcG → | DUF1016 family protein in the PD‑(D/E)XK nuclease superfamily |
| RA | 3,368,189 | A→G | 6.2% | A121A (GCA→GCG) | yhcG → | DUF1016 family protein in the PD‑(D/E)XK nuclease superfamily |
| RA | 3,390,969 | A→T | 6.3% | S354T (TCC→ACC) | tldD ← | putative peptidase |
| RA | 3,432,812 | A→T | 5.8% | L250* (TTG→TAG) | smf ← | DNA recombination‑mediator A family protein |
| RA | 3,439,588 | G→C | 5.4% | intergenic (‑79/+28) | yhdN ← / ← rplQ | DUF1992 family protein/50S ribosomal subunit protein L17 |
| RA | 3,439,589 | G→C | 5.3% | intergenic (‑80/+27) | yhdN ← / ← rplQ | DUF1992 family protein/50S ribosomal subunit protein L17 |
| RA | 3,504,875 | T→G | 5.2% | intergenic (+92/+60) | frlR → / ← yhfS | putative DNA‑binding transcriptional regulator/FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein |
| RA | 3,525,436 | T→C | 5.5% | intergenic (+13/+153) | mrcA → / ← nudE | penicillin‑binding protein 1a, murein transglycosylase and transpeptidase/adenosine nucleotide hydrolase; Ap3A/Ap2A/ADP‑ribose/NADH hydrolase |
| RA | 3,525,437 | T→G | 5.2% | intergenic (+14/+152) | mrcA → / ← nudE | penicillin‑binding protein 1a, murein transglycosylase and transpeptidase/adenosine nucleotide hydrolase; Ap3A/Ap2A/ADP‑ribose/NADH hydrolase |
| RA | 3,525,438 | C→A | 5.4% | intergenic (+15/+151) | mrcA → / ← nudE | penicillin‑binding protein 1a, murein transglycosylase and transpeptidase/adenosine nucleotide hydrolase; Ap3A/Ap2A/ADP‑ribose/NADH hydrolase |
| RA | 3,525,439 | G→A | 5.4% | intergenic (+16/+150) | mrcA → / ← nudE | penicillin‑binding protein 1a, murein transglycosylase and transpeptidase/adenosine nucleotide hydrolase; Ap3A/Ap2A/ADP‑ribose/NADH hydrolase |
| RA | 3,534,738 | T→C | 5.5% | G377G (GGA→GGG) | envZ ← | sensory histidine kinase in two‑component regulatory system with OmpR |
| RA | 3,560,455:1 | +G | 100% | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,606,114 | T→A | 6.3% | W122R (TGG→AGG) | yhhN → | TMEM86 family putative inner membrane protein |
| RA | 3,693,326 | C→G | 100% | R637R (CGG→CGC) | bcsA ← | cellulose synthase, catalytic subunit |
| RA | 3,777,919 | G→A | 5.5% | G174D (GGC→GAC) | lldP → | L‑lactate permease |
| RA | 3,792,765 | C→T | 5.2% | intergenic (‑214/+61) | kbl ← / ← yibB | glycine C‑acetyltransferase/YibB family protein, function unknown |
| RA | 3,806,430 | C→A | 9.3% | R213L (CGC→CTC) | waaG ← | UDP‑glucose:(heptosyl)lipopolysaccharide alpha‑1,3‑glucosyltransferase; lipopolysaccharide core biosynthesis protein; lipopolysaccharide glucosyltransferase I |
| JC | 3,815,859 | Δ82 bp | 100% | [rph]–[rph] | [rph], [rph] | |
| RA | 3,873,365 | A→G | 6.0% | L83P (CTC→CCC) | dgoA ← | 2‑oxo‑3‑deoxygalactonate 6‑phosphate aldolase |
| RA | 3,873,370 | A→T | 6.7% | C81* (TGT→TGA) | dgoA ← | 2‑oxo‑3‑deoxygalactonate 6‑phosphate aldolase |
| RA | 3,873,375 | C→T | 7.4% | G80S (GGC→AGC) | dgoA ← | 2‑oxo‑3‑deoxygalactonate 6‑phosphate aldolase |
| RA | 3,927,717 | C→T | 5.1% | A188V (GCG→GTG) | asnA → | asparagine synthetase A |
| RA | 3,930,341 | A→C | 5.2% | R251R (CGT→CGG) | ravA ← | hexameric AAA+ MoxR family ATPase, putative molecular chaperone |
| RA | 3,959,925 | A→T | 5.7% | intergenic (‑112/+87) | ppiC ← / ← yifN | peptidyl‑prolyl cis‑trans isomerase C (rotamase C)/PemK toxin family pseudogene |
| RA | 3,959,926 | A→T | 5.5% | intergenic (‑113/+86) | ppiC ← / ← yifN | peptidyl‑prolyl cis‑trans isomerase C (rotamase C)/PemK toxin family pseudogene |
| RA | 3,997,433 | T→A | 6.2% | M84K (ATG→AAG) | yigB → | 5‑amino‑6‑(5‑phospho‑D‑ribitylamino)uracil phosphatase; pyrimidine phosphatase; riboflavin synthesis |
| MC JC | 4,001,645 | Δ5 bp | 100% | coding (220‑224/951 nt) | corA → | magnesium/nickel/cobalt transporter |
| RA | 4,173,658 | G→A | 5.8% | G193S (GGC→AGC) | birA → | bifunctional biotin‑[acetylCoA carboxylase] holoenzyme synthetase/ DNA‑binding transcriptional repressor, bio‑5'‑AMP‑binding |
| RA | 4,184,543 | C→A | 100% | P1100Q (CCG→CAG) | rpoB → | RNA polymerase, beta subunit |
| RA | 4,296,060 | C→T | 32.1% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,380:1 | +CG | 100% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,367,339 | G→A | 5.2% | P330L (CCG→CTG) | aspA ← | aspartate ammonia‑lyase |
| RA | 4,388,496 | T→A | 5.2% | Q292L (CAG→CTG) | mscM ← | mechanosensitive channel protein, miniconductance |
| RA | 4,388,502 | G→C | 5.2% | A290G (GCC→GGC) | mscM ← | mechanosensitive channel protein, miniconductance |
| RA | 4,388,508 | T→A | 6.1% | Q288L (CAG→CTG) | mscM ← | mechanosensitive channel protein, miniconductance |
| RA | 4,559,342 | G→A | 5.5% | P62L (CCA→CTA) | iadA ← | isoaspartyl dipeptidase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 131574 | 134211 | 2638 | 30 [28] | [28] 30 | [acnB] | [acnB] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 127338 = | 69 (0.870) | 4 (0.050) | 4/252 | NT | 5.4% | coding (1644/1893 nt) | aceF | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 |
| ? | NC_000913 | 127444 = | 73 (0.950) | coding (1750/1893 nt) | aceF | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 | |||||
| * | ? | NC_000913 | = 381669 | NA (NA) | 4 (0.050) | 3/246 | NT | NA | noncoding (410/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 381695 | NA (NA) | noncoding (436/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 1207790 = | 31 (0.390) | 43 (0.620) | 38/228 | NT | 59.2% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 32 (0.460) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 27 (0.340) | 36 (0.520) | 31/228 | NT | 56.4% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 32 (0.460) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1416622 | 73 (0.920) | 5 (0.070) | 5/246 | NT | 6.4% | coding (765/2601 nt) | recE | Rac prophage; exonuclease VIII, 5' to 3' specific dsDNA exonuclease |
| ? | NC_000913 | = 1416637 | 76 (1.020) | coding (750/2601 nt) | recE | Rac prophage; exonuclease VIII, 5' to 3' specific dsDNA exonuclease | |||||
| * | ? | NC_000913 | = 3943635 | NA (NA) | 5 (0.070) | 5/246 | NT | 8.1% | intergenic (+125/‑69) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon |
| ? | NC_000913 | = 4037446 | 60 (0.760) | intergenic (+111/‑73) | alaT/rrlA | tRNA‑Ala/23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913 | 4295853 = | NA (NA) | 4 (0.060) +TTAAGCGTCGC |
4/238 | NT | NA | noncoding (19/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites |
| ? | NC_000913 | 4295861 = | NA (NA) | noncoding (27/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | |||||
| * | ? | NC_000913 | = 4638146 | 69 (0.870) | 5 (0.070) | 5/238 | NT | 7.1% | intergenic (+26/‑32) | creC/creD | sensory histidine kinase in two‑component regulatory system with CreB or PhoB/inner membrane protein |
| ? | NC_000913 | = 4638170 | 67 (0.930) | intergenic (+50/‑8) | creC/creD | sensory histidine kinase in two‑component regulatory system with CreB or PhoB/inner membrane protein | |||||