mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.32.0 revision 6ff6de7d1b87
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,315,392 | 0 | G | T | 29.8% | 70.5 / 28.1 | 58 | H50N (CAT→AAT) | phnO | aminoalkylphosphonate N‑acetyltransferase |
| * | NC_000913 | 2,826,627 | 0 | T | C | 27.8% | 58.5 / 33.7 | 55 | Y80H (TAT→CAT) | srlE | glucitol/sorbitol‑specific enzyme IIB component of PTS |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 730507 | NA (NA) | 5 (0.100) | 4/272 | 7.4 | 9.3% | coding (925/4194 nt) | rhsC | Rhs protein with putative toxin domain, putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 730543 | 51 (0.970) | coding (961/4194 nt) | rhsC | Rhs protein with putative toxin domain, putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | = 1446765 | 55 (1.040) | 4 (0.080) | 3/264 | 7.8 | 6.8% | coding (519/906 nt) | feaR | transcriptional activator for tynA and feaB |
| ? | NC_000913 | = 1446820 | 59 (1.200) | coding (464/906 nt) | feaR | transcriptional activator for tynA and feaB | |||||
| * | ? | NC_000913 | = 4058301 | 65 (1.230) | 3 (0.060) | 3/266 | 7.9 | 4.7% | intergenic (‑268/‑105) | glnA/typA | glutamine synthetase/GTP‑binding protein |
| ? | NC_000913 | = 4058332 | 60 (1.210) | intergenic (‑299/‑74) | glnA/typA | glutamine synthetase/GTP‑binding protein | |||||
| * | ? | NC_000913 | = 3104380 | 55 (1.040) | 3 (0.060) | 3/268 | 7.9 | 5.5% | intergenic (+14/‑51) | yggX/mltC | oxidative damage protective factor for iron‑sulfur proteins/membrane‑bound lytic murein transglycosylase C |
| ? | NC_000913 | = 3104385 | 52 (1.040) | intergenic (+19/‑46) | yggX/mltC | oxidative damage protective factor for iron‑sulfur proteins/membrane‑bound lytic murein transglycosylase C | |||||
| * | ? | NC_000913 | = 4020534 | 50 (0.950) | 3 (0.060) | 3/270 | 8.0 | 6.2% | coding (310/1641 nt) | ubiB | regulator of octaprenylphenol hydroxylation, ubiquinone synthesis, regulator of 2'‑N‑acetyltransferase, putative ABC1 family protein kinase |
| ? | NC_000913 | = 4020567 | 43 (0.860) | coding (343/1641 nt) | ubiB | regulator of octaprenylphenol hydroxylation, ubiquinone synthesis, regulator of 2'‑N‑acetyltransferase, putative ABC1 family protein kinase | |||||
| * | ? | NC_000913 | = 3478877 | 54 (1.020) | 3 (0.060) | 3/274 | 8.1 | 5.8% | coding (1729/1806 nt) | kefB | potassium:proton antiporter |
| ? | NC_000913 | = 3478891 | 46 (0.900) | coding (1715/1806 nt) | kefB | potassium:proton antiporter | |||||
| * | ? | NC_000913 | 2662306 = | NA (NA) | 10 (0.190) | 3/278 | 8.2 | NA | intergenic (‑177/+275) | iscR/trmJ | isc operon transcriptional repressor, suf operon transcriptional activator, oxidative stress‑ and iron starvation‑inducible, autorepressor/tRNA mC32,mU32 2'‑O‑methyltransferase, SAM‑dependent |
| ? | NC_000913 | = 2662578 | NA (NA) | intergenic (‑449/+3) | iscR/trmJ | isc operon transcriptional repressor, suf operon transcriptional activator, oxidative stress‑ and iron starvation‑inducible, autorepressor/tRNA mC32,mU32 2'‑O‑methyltransferase, SAM‑dependent | |||||
| * | ? | NC_000913 | = 1206693 | 55 (1.040) | 3 (0.060) | 3/284 | 8.3 | 4.8% | pseudogene (551/780 nt) | jayE | pseudogene, e14 prophage,Phage or Prophage Related |
| ? | NC_000913 | 1229450 = | 63 (1.190) | intergenic (+174/+33) | ycgN/hlyE | UPF0153 family cysteine cluster protein/hemolysin E | |||||
| * | ? | NC_000913 | 781369 = | 55 (1.040) | 8 (0.150) +G |
3/282 | 8.3 | 13.4% | noncoding (1/76 nt) | lysZ | tRNA‑Lys |
| ? | NC_000913 | = 2521126 | 49 (0.930) | intergenic (+2/‑45) | valX/valY | tRNA‑Val/tRNA‑Val | |||||