mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 1190 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4639801 = | 106 (1.060) | 5 (0.050) | 4/166 | NT | 5.1% | coding (506/717 nt) | arcA | response regulator in two‑component regulatory system with ArcB or CpxA |
| ? | NC_000913 | 4639844 = | 87 (0.940) | coding (463/717 nt) | arcA | response regulator in two‑component regulatory system with ArcB or CpxA | |||||
| * | ? | NC_000913 | = 4638329 | 90 (0.900) | 11 (0.120) | 7/168 | NT | 11.0% | coding (152/1353 nt) | creD | inner membrane protein |
| ? | NC_000913 | = 4638348 | 94 (1.000) | coding (171/1353 nt) | creD | inner membrane protein | |||||
| * | ? | NC_000913 | = 4638146 | 87 (0.870) | 6 (0.070) | 5/156 | NT | 6.7% | intergenic (+26/‑32) | creC/creD | sensory histidine kinase in two‑component regulatory system with CreB or PhoB/inner membrane protein |
| ? | NC_000913 | = 4638170 | 92 (1.050) | intergenic (+50/‑8) | creC/creD | sensory histidine kinase in two‑component regulatory system with CreB or PhoB/inner membrane protein | |||||
| * | ? | NC_000913 | 4634391 = | 94 (0.940) | 6 (0.070) | 5/164 | NT | 6.8% | coding (595/648 nt) | ytjC | phosphatase |
| ? | NC_000913 | 4634423 = | 79 (0.860) | coding (627/648 nt) | ytjC | phosphatase | |||||
| * | ? | NC_000913 | 4628815 = | 119 (1.190) | 5 (0.050) | 4/164 | NT | 4.4% | noncoding (121/150 nt) | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site |
| ? | NC_000913 | 4628845 = | 110 (1.200) | intergenic (+298/+10) | nadR/ettA | trifunctional protein: nicotinamide mononucleotide adenylyltransferase, ribosylnicotinamide kinase, transcriptional repressor/energy‑dependent translational throttle A | |||||
| * | ? | NC_000913 | 4627662 = | 94 (0.940) | 6 (0.060) | 4/170 | NT | 6.3% | coding (348/1233 nt) | nadR | trifunctional protein: nicotinamide mononucleotide adenylyltransferase, ribosylnicotinamide kinase, transcriptional repressor |
| ? | NC_000913 | 4627688 = | 89 (0.930) | coding (374/1233 nt) | nadR | trifunctional protein: nicotinamide mononucleotide adenylyltransferase, ribosylnicotinamide kinase, transcriptional repressor | |||||
| * | ? | NC_000913 | 4626299 = | 112 (1.120) | 3 (0.030) | 3/168 | NT | 2.9% | coding (388/1383 nt) | radA | DNA repair protein |
| ? | NC_000913 | 4626342 = | 96 (1.020) | coding (431/1383 nt) | radA | DNA repair protein | |||||
| * | ? | NC_000913 | 4625174 = | 122 (1.220) | 4 (0.040) | 3/166 | NT | 3.3% | coding (280/969 nt) | serB | 3‑phosphoserine phosphatase |
| ? | NC_000913 | 4625219 = | 120 (1.290) | coding (325/969 nt) | serB | 3‑phosphoserine phosphatase | |||||
| * | ? | NC_000913 | = 4621838 | 86 (0.860) | 5 (0.060) | 4/162 | NT | 5.5% | coding (70/1332 nt) | yjjJ | putative protein kinase |
| ? | NC_000913 | = 4621865 | 95 (1.050) | coding (97/1332 nt) | yjjJ | putative protein kinase | |||||
| * | ? | NC_000913 | 4620598 = | 105 (1.050) | 5 (0.050) | 5/166 | NT | 5.3% | coding (996/1224 nt) | deoB | phosphopentomutase |
| ? | NC_000913 | 4620626 = | 82 (0.880) | coding (1024/1224 nt) | deoB | phosphopentomutase | |||||