mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 1113 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4637531 | 81 (0.940) | 10 (0.130) | 7/162 | NT | 12.5% | coding (836/1425 nt) | creC | sensory histidine kinase in two‑component regulatory system with CreB or PhoB |
| ? | NC_000913 | = 4637546 | 66 (0.850) | coding (851/1425 nt) | creC | sensory histidine kinase in two‑component regulatory system with CreB or PhoB | |||||
| * | ? | NC_000913 | 4637524 = | 83 (0.970) | 5 (0.060) | 3/162 | NT | 6.6% | coding (829/1425 nt) | creC | sensory histidine kinase in two‑component regulatory system with CreB or PhoB |
| ? | NC_000913 | 4637555 = | 66 (0.850) | coding (860/1425 nt) | creC | sensory histidine kinase in two‑component regulatory system with CreB or PhoB | |||||
| * | ? | NC_000913 | 4634391 = | 90 (1.050) | 7 (0.090) | 6/164 | NT | 7.7% | coding (595/648 nt) | ytjC | phosphatase |
| ? | NC_000913 | 4634423 = | 84 (1.060) | coding (627/648 nt) | ytjC | phosphatase | |||||
| * | ? | NC_000913 | = 4629147 | 61 (0.710) | 7 (0.090) | 5/168 | NT | 10.7% | coding (1376/1668 nt) | ettA | energy‑dependent translational throttle A |
| ? | NC_000913 | = 4629161 | 59 (0.730) | coding (1362/1668 nt) | ettA | energy‑dependent translational throttle A | |||||
| * | ? | NC_000913 | = 4628749 | 90 (1.050) | 6 (0.080) | 5/164 | NT | 6.9% | noncoding (55/150 nt) | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site |
| ? | NC_000913 | = 4628768 | 80 (1.010) | noncoding (74/150 nt) | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | = 4621981 | 65 (0.760) | 5 (0.060) | 5/166 | NT | 8.2% | coding (213/1332 nt) | yjjJ | putative protein kinase |
| ? | NC_000913 | = 4622003 | 52 (0.650) | coding (235/1332 nt) | yjjJ | putative protein kinase | |||||
| * | ? | NC_000913 | = 4614762 | 81 (0.940) | 7 (0.090) | 4/170 | NT | 7.7% | coding (782/864 nt) | yjjW | putative pyruvate formate lyase activating enzyme |
| ? | NC_000913 | = 4614786 | 90 (1.100) | coding (758/864 nt) | yjjW | putative pyruvate formate lyase activating enzyme | |||||
| * | ? | NC_000913 | 4614564 = | 96 (1.120) | 6 (0.080) | 4/164 | NT | 6.4% | noncoding (308/388 nt) | REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences |
| ? | NC_000913 | 4614594 = | 86 (1.090) | noncoding (338/388 nt) | REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences | |||||
| * | ? | NC_000913 | = 4607578 | 82 (0.960) | 6 (0.070) | 4/172 | NT | 6.8% | coding (123/1032 nt) | rsmC | 16S rRNA m(2)G1207 methyltransferase, SAM‑dependent |
| ? | NC_000913 | = 4607601 | 84 (1.010) | coding (100/1032 nt) | rsmC | 16S rRNA m(2)G1207 methyltransferase, SAM‑dependent | |||||
| * | ? | NC_000913 | 4601307 = | 100 (1.170) | 6 (0.070) | 5/168 | NT | 5.8% | coding (211/540 nt) | dnaT | DNA biosynthesis protein (primosomal protein I) |
| ? | NC_000913 | 4601335 = | 102 (1.260) | coding (183/540 nt) | dnaT | DNA biosynthesis protein (primosomal protein I) | |||||