mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.28.1 revision 52323b585d6f
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 205,979 | T→C | D189D (GAT→GAC) | yhjG → | hypothetical protein |
| JC JC | 1,998,644 | Δ2 bp :: repeat_region (+) +6 bp :: Δ1 bp | coding (115‑120/360 nt) | yeaR → | hypothetical protein |
| RA | 2,140,096 | T→C | E180G (GAA→GGA) | purR ← | PurR family transcriptional regulator |
| JC JC | 2,238,049 | Δ3 bp :: repeat_region (+) +5 bp :: Δ1 bp | coding (157‑161/216 nt) | essQ → | Lysis protein S homolog from lambdoid prophage Qin |
| RA | 3,668,924 | (T)5→6 | pseudogene (353/455 nt) | lpxA ← | hydroxymyristoyl‑ACP dehydratase |
| JC | 3,702,452 | (GTCATAACGACCGCCTAGGG)1→2 | coding (1442/2244 nt) | fhuA ← | ferrichrome‑iron receptor |
| RA | 4,547,816 | A→G | Y80H (TAC→CAC) | rho ← | transcription termination factor Rho |
| JC JC | 4,548,240 | repeat_region (+) +4 bp :: Δ7 bp | intergenic (‑1/+137) | ECDH1_RS22450 ← / ← trxA | rho operon leader peptide/thiol reductase thioredoxin |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | DH1 | 224996 = | 60 (0.100) | 692 (1.180) | 259/300 | 0.0 | 92.0% | coding (402/528 nt) | gadE | transcriptional regulator GadE |
| ? | DH1 | = 3851581 | NA (NA) | noncoding (769/769 nt) | repeat_region | repeat region | |||||
| * | ? | DH1 | = 225004 | 83 (0.140) | 555 (0.950) | 244/300 | 0.0 | 87.0% | coding (394/528 nt) | gadE | transcriptional regulator GadE |
| ? | DH1 | = 300335 | NA (NA) | noncoding (772/773 nt) | repeat_region | repeat region | |||||
| * | ? | DH1 | 245493 = | 58 (0.100) | 525 (0.900) | 240/300 | 0.0 | 59.2% | coding (629/1500 nt) | pitA | Low‑affinity inorganic phosphate transporter 1 |
| ? | DH1 | = 4011715 | 666 (1.140) | intergenic (+13/+15) | insG/ECDH1_RS19860 | transposase/hypothetical protein | |||||
| * | ? | DH1 | = 245504 | 69 (0.120) | 581 (0.990) | 251/300 | 0.0 | 60.6% | coding (618/1500 nt) | pitA | Low‑affinity inorganic phosphate transporter 1 |
| ? | DH1 | 4010290 = | 687 (1.180) | intergenic (‑543/‑84) | yjhB/insG | MFS transporter membrane protein/transposase | |||||