mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.28.1 revision 52323b585d6f
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 32 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | DH1 | 936,169 | 0 | T | . | 35.1% | 259.1 / 155.6 | 118 | intergenic (‑13/+21) | ECDH1_RS04615/ECDH1_RS04620 | tRNA‑Met/tRNA‑Met |
| * | DH1 | 3,448,526 | 0 | A | C | 30.3% | 799.0 / 152.4 | 476 | intergenic (‑86/+70) | malZ/proY | alpha‑glycosidase/proline‑specific permease ProY |
| * | DH1 | 936,293 | 0 | T | . | 29.0% | 346.9 / 154.1 | 144 | intergenic (‑27/+7) | ECDH1_RS04620/ECDH1_RS04625 | tRNA‑Met/tRNA‑Met |
| * | DH1 | 3,906,832 | 0 | C | A | 27.9% | 178.3 / 15.8 | 116 | intergenic (+3/‑32) | ECDH1_RS19315/ECDH1_RS19320 | tRNA‑Leu/tRNA‑Leu |
| * | DH1 | 613,770 | 0 | C | A | 27.7% | 274.6 / 23.8 | 239 | intergenic (+631/+392) | garK/yhaC | glycerate 2‑kinase/pentapeptide repeats‑related protein |
| * | DH1 | 2,169,577 | 0 | T | G | 26.9% | 341.7 / 74.4 | 310 | R661R (CGA→CGC) | rsxC | electron transporter RsxC |
| * | DH1 | 2,169,548 | 0 | G | T | 26.7% | 602.5 / 85.3 | 319 | P671Q (CCG→CAG) | rsxC | electron transporter RsxC |
| * | DH1 | 1,065,618 | 0 | A | G | 26.4% | 466.8 / 188.3 | 298 | intergenic (+53/‑10) | ECDH1_RS05245/ECDH1_RS05250 | tRNA‑Arg/tRNA‑Arg |
| * | DH1 | 2,169,720 | 0 | C | G | 26.3% | 208.2 / 59.6 | 205 | E614Q (GAA→CAA) | rsxC | electron transporter RsxC |
| * | DH1 | 3,448,523 | 0 | A | C | 25.9% | 1002.5 / 98.3 | 476 | intergenic (‑83/+73) | malZ/proY | alpha‑glycosidase/proline‑specific permease ProY |
| * | DH1 | 936,278 | 1 | . | T | 25.3% | 211.8 / 120.4 | 91 | intergenic (‑12/+22) | ECDH1_RS04620/ECDH1_RS04625 | tRNA‑Met/tRNA‑Met |
| * | DH1 | 2,326,287 | 0 | G | T | 25.0% | 1309.3 / 144.2 | 617 | intergenic (+207/+200) | yddM/fdnI | transcriptional regulator/formate dehydrogenase nitrate‑inducible cytochrome b556(Fdn) subunit |
| * | DH1 | 1,065,605 | 0 | A | T | 24.7% | 434.8 / 120.2 | 256 | intergenic (+40/‑23) | ECDH1_RS05245/ECDH1_RS05250 | tRNA‑Arg/tRNA‑Arg |
| * | DH1 | 613,597 | 0 | G | C | 24.3% | 480.1 / 59.9 | 309 | intergenic (+458/+565) | garK/yhaC | glycerate 2‑kinase/pentapeptide repeats‑related protein |
| * | DH1 | 2,591,513 | 0 | T | G | 24.2% | 286.9 / 48.6 | 297 | D86A (GAC→GCC) | ECDH1_RS12815 | hypothetical protein |
| * | DH1 | 3,447,403 | 0 | A | C | 23.9% | 849.8 / 88.1 | 435 | G346G (GGT→GGG) | malZ | alpha‑glycosidase |
| * | DH1 | 613,613 | 0 | T | G | 23.8% | 243.8 / 34.8 | 244 | intergenic (+474/+549) | garK/yhaC | glycerate 2‑kinase/pentapeptide repeats‑related protein |
| * | DH1 | 3,906,837 | 0 | C | G | 23.4% | 203.5 / 17.0 | 122 | intergenic (+8/‑27) | ECDH1_RS19315/ECDH1_RS19320 | tRNA‑Leu/tRNA‑Leu |
| * | DH1 | 936,297 | 0 | A | G | 23.0% | 467.1 / 135.5 | 215 | intergenic (‑31/+3) | ECDH1_RS04620/ECDH1_RS04625 | tRNA‑Met/tRNA‑Met |
| * | DH1 | 3,184,318 | 0 | T | A | 22.8% | 406.5 / 68.0 | 206 | noncoding (30/75 nt) | ECDH1_RS15785 | tRNA‑Gln |
| Marginal new junction evidence (lowest skew 10 of 52 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | DH1 | = 2668875 | 451 (0.770) | 131 (0.250) | 102/268 | 14.0 | 24.4% | pseudogene (20/345 nt) | pinE | hypothetical protein |
| ? | DH1 | = 2670672 | 407 (0.780) | coding (306/789 nt) | stfP | integrase | |||||
| * | ? | DH1 | 2668875 = | 401 (0.760) | 127 (0.240) | 97/268 | 15.3 | 24.2% | pseudogene (20/345 nt) | pinE | hypothetical protein |
| ? | DH1 | 2670674 = | NA (NA) | noncoding (1/242 nt) | repeat_region | repeat region | |||||
| * | ? | DH1 | = 3184062 | 552 (0.940) | 98 (0.240) +45 bp |
38/210 | 29.3 | 26.3% | noncoding (77/77 nt) | ECDH1_RS15770 | tRNA‑Met |
| ? | DH1 | 3184613 = | 234 (0.400) | intergenic (+36/‑2) | ECDH1_RS15795/ECDH1_RS15800 | tRNA‑Gln/tRNA‑TERM | |||||
| * | ? | DH1 | = 1519281 | 391 (0.670) | 73 (0.140) +AACCTTCTAATT |
51/276 | 32.1 | 16.9% | coding (788/900 nt) | yfaD | transposase |
| ? | DH1 | 1519282 = | 391 (0.670) | coding (787/900 nt) | yfaD | transposase | |||||
| * | ? | DH1 | 1355966 = | 248 (0.420) | 99 (0.170) +CTTC |
55/292 | 32.3 | 25.1% | noncoding (76/76 nt) | ECDH1_RS06685 | tRNA‑Val |
| ? | DH1 | = 3099750 | 359 (0.610) | noncoding (1/76 nt) | ECDH1_RS15360 | tRNA‑Lys | |||||
| * | ? | DH1 | = 1519086 | 406 (0.690) | 45 (0.110) | 35/220 | 32.4 | 14.1% | coding (71/186 nt) | ECDH1_RS07485 | hypothetical protein |
| ? | DH1 | 1519282 = | 249 (0.580) | coding (787/900 nt) | yfaD | transposase | |||||
| * | ? | DH1 | 3183985 = | 597 (1.020) | 107 (0.200) +GATTGTTTCTTC |
48/276 | 33.5 | 22.4% | intergenic (+379/‑1) | asnB/ECDH1_RS15770 | asparagine synthetase B/tRNA‑Met |
| ? | DH1 | = 3184256 | 207 (0.350) | intergenic (+2/‑33) | ECDH1_RS15780/ECDH1_RS15785 | tRNA‑Gln/tRNA‑Gln | |||||
| * | ? | DH1 | 1355843 = | 152 (0.260) | 141 (0.240) +C |
54/298 | 33.5 | 35.7% | intergenic (‑44/+3) | ECDH1_RS06675/ECDH1_RS06680 | tRNA‑Val/tRNA‑Val |
| ? | DH1 | = 3099750 | 359 (0.610) | noncoding (1/76 nt) | ECDH1_RS15360 | tRNA‑Lys | |||||
| * | ? | DH1 | = 2590941 | 543 (0.930) | 71 (0.140) | 37/260 | 36.9 | 17.5% | intergenic (+1/‑209) | ECDH1_RS12805/ECDH1_RS12810 | tRNA‑Tyr/tRNA‑Tyr |
| ? | DH1 | 2591414 = | 197 (0.390) | noncoding (199/555 nt) | repeat_region | repeat region | |||||
| * | ? | DH1 | = 1355505 | 569 (0.970) | 61 (0.120) | 35/260 | 38.0 | 13.2% | noncoding (54/348 nt) | repeat_region | repeat region |
| ? | DH1 | 3099693 = | 306 (0.600) | noncoding (58/76 nt) | ECDH1_RS15360 | tRNA‑Lys | |||||