mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 351 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 4,291,943 | 0 | T | C | 70.6% | 49.6 / 23.3 | 34 | F196F (TTT→TTC) | nrfA | nitrite reductase, formate‑dependent, cytochrome |
| * | W3110S.gb | 2,552,898 | 0 | G | A | 69.0% | 73.8 / 48.5 | 58 | S260S (TCG→TCA) | murP | fused predicted enzyme IIBC components of PTS |
| * | W3110S.gb | 1,535,985 | 1 | . | G | 65.0% | 43.4 / 21.3 | 20 | coding (248/846 nt) | nhoA | N‑hydroxyarylamine O‑acetyltransferase |
| * | W3110S.gb | 1,137,236 | 0 | G | A | 63.3% | 21.1 / 28.5 | 30 | Q32Q (CAG→CAA) | flgH | flagellar protein of basal‑body outer‑membrane L ring |
| * | W3110S.gb | 2,498,089 | 0 | T | C | 61.9% | 11.8 / 19.6 | 21 | V204V (GTA→GTG) | frc | formyl‑CoA transferase, NAD(P)‑binding |
| * | W3110S.gb | 912,719 | 0 | G | A | 61.5% | 13.6 / 25.3 | 26 | G506G (GGC→GGT) | hcp | hybrid‑cluster [4Fe‑2S‑2O] protein in anaerobic terminal reductases |
| * | W3110S.gb | 1,134,504 | 0 | T | G | 61.3% | 41.6 / 22.5 | 31 | G118G (GGT→GGG) | flgE | flagellar hook protein |
| * | W3110S.gb | 1,137,233 | 0 | G | A | 59.4% | 13.7 / 35.4 | 32 | V31V (GTG→GTA) | flgH | flagellar protein of basal‑body outer‑membrane L ring |
| * | W3110S.gb | 3,819,131 | 0 | C | G | 56.9% | 19.5 / 65.3 | 51 | intergenic (‑142/‑116) | gmk/ligB | guanylate kinase/DNA ligase, NAD(+)‑dependent |
| * | W3110S.gb | 2,886,160 | 0 | A | T | 56.5% | 6.5 / 27.1 | 23 | intergenic (‑285/+74) | ygcB/cysH | conserved hypothetical protein, member of DEAD box family/3'‑phosphoadenosine 5'‑phosphosulfate reductase |
| * | W3110S.gb | 2,886,161 | 0 | T | G | 56.5% | 19.0 / 22.8 | 23 | intergenic (‑286/+73) | ygcB/cysH | conserved hypothetical protein, member of DEAD box family/3'‑phosphoadenosine 5'‑phosphosulfate reductase |
| * | W3110S.gb | 911,817 | 0 | G | A | 56.2% | 0.3 / 16.8 | 16 | A252A (GCC→GCT) | hcr | HCP oxidoreductase, NADH‑dependent |
| * | W3110S.gb | 2,952,845 | 0 | C | T | 56.2% | 0.4 / 16.5 | 16 | T605T (ACG→ACA) | recB | exonuclease V (RecBCD complex), beta subunit |
| * | W3110S.gb | 1,263,637 | 0 | G | A | 55.6% | 3.9 / 31.9 | 27 | A273V (GCT→GTT) | ispE | 4‑diphosphocytidyl‑2‑C‑methylerythritol kinase |
| * | W3110S.gb | 2,552,890 | 0 | C | T | 54.9% | 13.3 / 96.8 | 71 | L258L (CTG→TTG) | murP | fused predicted enzyme IIBC components of PTS |
| * | W3110S.gb | 2,886,163 | 0 | A | C | 54.2% | 15.7 / 24.3 | 24 | intergenic (‑288/+71) | ygcB/cysH | conserved hypothetical protein, member of DEAD box family/3'‑phosphoadenosine 5'‑phosphosulfate reductase |
| * | W3110S.gb | 2,681,729 | 0 | A | T | 52.9% | ‑5.8 / 22.0 | 17 | S71C (AGC→TGC) | yphH | predicted DNA‑binding transcriptional regulator |
| * | W3110S.gb | 2,058,259 | 0 | C | T | 52.6% | ‑1.8 / 53.3 | 38 | A354A (GCC→GCT) | amn | AMP nucleosidase |
| * | W3110S.gb | 1,622,293 | 0 | T | A | 51.7% | ‑5.7 / 42.0 | 29 | I187F (ATT→TTT) | eamA | cysteine and O‑acetyl‑L‑serine efflux system |
| * | W3110S.gb | 928,052 | 0 | A | G | 51.5% | 0.2 / 44.0 | 33 | R522R (CGT→CGC) | cydC | fused cysteine transporter subunits and membrane component and ATP‑binding component of ABC superfamily |