mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 61 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,763,604 | 0 | C | G | 74.3% | 113.8 / 159.8 | 214 | noncoding (240/1542 nt) | rrsG | 16S ribosomal RNA |
| * | minE | 1,763,594 | 0 | A | T | 71.3% | 153.5 / 194.8 | 223 | noncoding (250/1542 nt) | rrsG | 16S ribosomal RNA |
| * | minE | 1,885,961 | 1 | . | T | 71.2% | 169.7 / 79.7 | 73 | coding (1423/2757 nt) | barA | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY |
| * | minE | 1,133,882 | 0 | G | T | 70.6% | 11.7 / 13.5 | 17 | intergenic (‑108/‑179) | ydiY/pfkB | conserved hypothetical protein/6‑phosphofructokinase II |
| * | minE | 1,968,555 | 0 | A | G | 70.1% | 150.8 / 77.9 | 97 | G25G (GGT→GGC) | tktA | transketolase 1, thiamin‑binding |
| * | minE | 1,968,558 | 0 | G | C | 70.1% | 157.3 / 83.6 | 97 | S24S (TCC→TCG) | tktA | transketolase 1, thiamin‑binding |
| * | minE | 1,904,129 | 0 | G | . | 68.0% | 36.3 / 87.3 | 50 | coding (1793/2889 nt) | ptr | protease III |
| * | minE | 1,904,130 | 0 | C | . | 68.0% | 32.9 / 87.8 | 50 | coding (1792/2889 nt) | ptr | protease III |
| * | minE | 1,763,609 | 0 | G | A | 67.1% | 191.4 / 231.9 | 238 | noncoding (235/1542 nt) | rrsG | 16S ribosomal RNA |
| * | minE | 1,763,606 | 0 | T | C | 66.8% | 192.8 / 232.3 | 238 | noncoding (238/1542 nt) | rrsG | 16S ribosomal RNA |
| * | minE | 1,763,613 | 0 | A | T | 66.8% | 207.2 / 250.9 | 238 | noncoding (231/1542 nt) | rrsG | 16S ribosomal RNA |
| * | minE | 1,763,618 | 0 | C | T | 66.5% | 200.3 / 240.6 | 239 | noncoding (226/1542 nt) | rrsG | 16S ribosomal RNA |
| * | minE | 1,968,597 | 0 | A | G | 65.7% | 122.2 / 101.8 | 102 | I11I (ATT→ATC) | tktA | transketolase 1, thiamin‑binding |
| * | minE | 1,968,600 | 0 | A | C | 65.7% | 188.0 / 94.1 | 102 | A10A (GCT→GCG) | tktA | transketolase 1, thiamin‑binding |
| * | minE | 1,968,603 | 0 | A | G | 65.3% | 115.0 / 101.1 | 101 | N9N (AAT→AAC) | tktA | transketolase 1, thiamin‑binding |
| * | minE | 1,170,800 | 0 | G | A | 65.3% | 51.8 / 46.2 | 49 | A247T (GCT→ACT) | gdhA | glutamate dehydrogenase, NADP‑specific |
| * | minE | 276,639 | 1 | . | T | 61.5% | 200.6 / 146.4 | 96 | coding (491/615 nt) | cyoC | cytochrome o ubiquinol oxidase subunit III |
| * | minE | 786,407 | 0 | G | A | 59.8% | 144.7 / 274.6 | 214 | D175D (GAC→GAT) | nhaB | sodium:proton antiporter |
| * | minE | 786,413 | 0 | G | A | 59.4% | 137.8 / 275.9 | 212 | T173T (ACC→ACT) | nhaB | sodium:proton antiporter |
| * | minE | 618,746 | 0 | C | . | 57.1% | 74.4 / 119.0 | 49 | coding (53/1674 nt) | rpsA | 30S ribosomal subunit protein S1 |