mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,763,556 | 0 | T | C | 45.5% | 44.7 / 139.3 | 102 | noncoding (288/1542 nt) | rrsG | 16S ribosomal RNA |
| * | minE | 705,870 | 0 | A | G | 38.5% | 5.7 / 10.3 | 13 | intergenic (‑367/+128) | ymcC/serX | predicted outer membrane lipoprotein/tRNA‑Ser |
| * | minE | 2,359,867 | 0 | G | A | 36.0% | 140.2 / 116.7 | 111 | noncoding (1228/2905 nt) | rrlA | 23S ribosomal RNA |
| * | minE | 1,763,636 | 0 | A | G | 32.0% | 59.1 / 42.5 | 50 | noncoding (208/1542 nt) | rrsG | 16S ribosomal RNA |
| * | minE | 2,359,876 | 0 | C | T | 30.8% | 215.0 / 112.8 | 130 | noncoding (1219/2905 nt) | rrlA | 23S ribosomal RNA |
| * | minE | 2,394,574 | 0 | T | G | 20.4% | 90.6 / 10.1 | 54 | F47C (TTT→TGT) | rarD | predicted chloramphenical resistance permease |
| Marginal new junction evidence (lowest skew 10 of 25 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 204740 | NA (NA) | 10 (0.180) | 6/108 | 4.2 | NA | noncoding (157/2904 nt) | rrlH | 23S ribosomal RNA |
| ? | minE | = 204751 | NA (NA) | noncoding (168/2904 nt) | rrlH | 23S ribosomal RNA | |||||
| * | ? | minE | = 2412349 | 54 (0.870) | 5 (0.090) | 4/106 | 5.0 | 10.4% | intergenic (+422/‑257) | hemY/aslA | predicted protoheme IX synthesis protein/acrylsulfatase‑like enzyme |
| ? | minE | = 2412356 | 40 (0.750) | intergenic (+429/‑250) | hemY/aslA | predicted protoheme IX synthesis protein/acrylsulfatase‑like enzyme | |||||
| * | ? | minE | 204714 = | NA (NA) | 4 (0.070) | 4/110 | 5.1 | NA | noncoding (131/2904 nt) | rrlH | 23S ribosomal RNA |
| ? | minE | 204732 = | NA (NA) | noncoding (149/2904 nt) | rrlH | 23S ribosomal RNA | |||||
| * | ? | minE | 2878070 = | 72 (1.150) | 4 (0.070) | 4/112 | 5.2 | 5.8% | coding (165/1413 nt) | cycA | D‑alanine/D‑serine/glycine transporter |
| ? | minE | 2878092 = | 66 (1.170) | coding (187/1413 nt) | cycA | D‑alanine/D‑serine/glycine transporter | |||||
| * | ? | minE | 851218 = | 64 (1.030) | 3 (0.060) | 3/104 | 5.4 | 6.0% | intergenic (‑18/+87) | yciA/yciB | predicted hydrolase/predicted inner membrane protein |
| ? | minE | 851255 = | 40 (0.760) | intergenic (‑55/+50) | yciA/yciB | predicted hydrolase/predicted inner membrane protein | |||||
| * | ? | minE | 1514740 = | 54 (0.870) | 6 (0.110) | 3/110 | 5.6 | 11.1% | coding (751/1518 nt) | purF | amidophosphoribosyltransferase |
| ? | minE | 1514760 = | 48 (0.870) | coding (731/1518 nt) | purF | amidophosphoribosyltransferase | |||||
| * | ? | minE | = 1133128 | 66 (1.060) | 3 (0.050) | 3/110 | 5.6 | 4.9% | coding (647/759 nt) | ydiY | conserved hypothetical protein |
| ? | minE | = 1133138 | 58 (1.050) | coding (637/759 nt) | ydiY | conserved hypothetical protein | |||||
| * | ? | minE | 637630 = | 42 (0.670) | 5 (0.090) | 3/110 | 5.6 | 11.7% | intergenic (+145/‑116) | mukB/ycbB | fused chromosome partitioning proteins/predicted carboxypeptidase |
| ? | minE | 637652 = | 38 (0.690) | intergenic (+167/‑94) | mukB/ycbB | fused chromosome partitioning proteins/predicted carboxypeptidase | |||||
| * | ? | minE | 206841 = | NA (NA) | 3 (0.050) | 3/110 | 5.6 | NA | noncoding (2258/2904 nt) | rrlH | 23S ribosomal RNA |
| ? | minE | 206866 = | NA (NA) | noncoding (2283/2904 nt) | rrlH | 23S ribosomal RNA | |||||
| * | ? | minE | = 2530303 | 66 (1.060) | 4 (0.070) | 3/112 | 5.7 | 6.3% | intergenic (+78/‑20) | rpmG/mutM | 50S ribosomal subunit protein L33/formamidopyrimidine/5‑formyluracil/ 5‑hydroxymethyluracil DNA glycosylase |
| ? | minE | = 2530315 | 59 (1.050) | intergenic (+90/‑8) | rpmG/mutM | 50S ribosomal subunit protein L33/formamidopyrimidine/5‑formyluracil/ 5‑hydroxymethyluracil DNA glycosylase | |||||