mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 804 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4620353 | 295 (0.770) | 7 (0.020) | 3/94 | NT | 2.5% | intergenic (‑14/‑197) | yjjK/slt | putative transporter subunit of ABC superfamily: ATP‑binding component/lytic murein transglycosylase, soluble |
| ? | CP009273 | = 4620382 | 305 (0.940) | intergenic (‑43/‑168) | yjjK/slt | putative transporter subunit of ABC superfamily: ATP‑binding component/lytic murein transglycosylase, soluble | |||||
| * | ? | CP009273 | = 4619007 | 388 (1.010) | 8 (0.030) | 6/84 | NT | 3.3% | coding (1333/1668 nt) | yjjK | putative transporter subunit of ABC superfamily: ATP‑binding component |
| ? | CP009273 | 4619854 = | 176 (0.610) | coding (486/1668 nt) | yjjK | putative transporter subunit of ABC superfamily: ATP‑binding component | |||||
| * | ? | CP009273 | 4618560 = | NA (NA) | 4 (0.010) | 3/98 | NT | 1.2% | noncoding (49/150 nt) | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site |
| ? | CP009273 | 4618593 = | 336 (1.000) | noncoding (82/150 nt) | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | |||||
| * | ? | CP009273 | 4610977 = | 430 (1.120) | 3 (0.010) | 3/96 | NT | 0.94% | coding (278/720 nt) | deoD | purine‑nucleoside phosphorylase |
| ? | CP009273 | 4611006 = | 264 (0.800) | coding (307/720 nt) | deoD | purine‑nucleoside phosphorylase | |||||
| * | ? | CP009273 | 4607857 = | 402 (1.040) | 4 (0.010) | 4/96 | NT | 1.1% | coding (718/780 nt) | deoC | 2‑deoxyribose‑5‑phosphate aldolase, NAD(P)‑linked |
| ? | CP009273 | 4607913 = | NA (NA) | coding (774/780 nt) | deoC | 2‑deoxyribose‑5‑phosphate aldolase, NAD(P)‑linked | |||||
| * | ? | CP009273 | = 4541998 | 639 (1.660) | 6 (0.020) | 6/98 | NT | 1.0% | coding (546/1185 nt) | uxuA | mannonate hydrolase |
| ? | CP009273 | = 4542002 | 583 (1.730) | coding (550/1185 nt) | uxuA | mannonate hydrolase | |||||
| * | ? | CP009273 | = 4538708 | 438 (1.140) | 12 (0.040) | 5/94 | NT | 3.3% | coding (84/903 nt) | fimH | minor component of type 1 fimbriae |
| ? | CP009273 | = 4538723 | 325 (1.010) | coding (99/903 nt) | fimH | minor component of type 1 fimbriae | |||||
| * | ? | CP009273 | = 4537954 | 383 (0.990) | 7 (0.020) | 5/100 | NT | 2.0% | coding (396/531 nt) | fimF | minor component of type 1 fimbriae |
| ? | CP009273 | = 4537964 | 350 (1.020) | coding (406/531 nt) | fimF | minor component of type 1 fimbriae | |||||
| * | ? | CP009273 | 4535241 = | 530 (1.380) | 8 (0.020) | 5/94 | NT | 1.8% | coding (329/2637 nt) | fimD | fimbrial usher outer membrane porin protein; FimCD chaperone‑usher |
| ? | CP009273 | 4535424 = | 429 (1.330) | coding (512/2637 nt) | fimD | fimbrial usher outer membrane porin protein; FimCD chaperone‑usher | |||||
| * | ? | CP009273 | = 4523631 | 636 (1.650) | 3 (0.010) | 3/96 | NT | 0.56% | coding (240/258 nt) | yjhX | UPF0386 family protein |
| ? | CP009273 | = 4523644 | 522 (1.580) | coding (227/258 nt) | yjhX | UPF0386 family protein | |||||