mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 66,706 | T→C | 63.1% | intergenic (‑174/‑168) | araD ← / → araC | pseudogene, truncated/ara regulon transcriptional activator; autorepressor |
| RA | 66,726 | T→C | 60.8% | intergenic (‑194/‑148) | araD ← / → araC | pseudogene, truncated/ara regulon transcriptional activator; autorepressor |
| RA | 104,052 | G→T | 14.1% | intergenic (+91/‑140) | lpxC → / → secM | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase/regulator of secA translation |
| RA | 692,035 | A→T | 7.1% | noncoding (38/75 nt) | glnV ← | tRNA‑Gln |
| RA | 692,040 | G→A | 7.3% | noncoding (33/75 nt) | glnV ← | tRNA‑Gln |
| RA | 692,043 | T→A | 9.2% | noncoding (30/75 nt) | glnV ← | tRNA‑Gln |
| RA | 692,366 | A→T | 5.5% | noncoding (30/75 nt) | glnU ← | tRNA‑Gln |
| RA | 802,799 | C→G | 16.1% | intergenic (‑62/+90) | ybhC ← / ← ybhB | acyl‑CoA thioesterase, lipoprotein/kinase inhibitor homolog, UPF0098 family |
| RA | 930,950 | A→C | 12.8% | Q757H (CAA→CAC) | ftsK → | DNA translocase at septal ring sorting daughter chromsomes |
| RA | 999,598 | A→C | 8.4% | T66P (ACG→CCG) | ycbF → | putative periplasmic pilin chaperone |
| RA | 1,243,621 | C→T | 7.3% | G317D (GGT→GAT) | dhaM ← | putative dihydroxyacetone‑specific PTS enzymes: HPr component/EI component |
| RA | 1,460,356 | T→C | 10.7% | pseudogene (708/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,460,359 | A→G | 8.2% | pseudogene (711/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,460,593 | C→G | 8.9% | pseudogene (945/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,461,157 | T→C | 5.9% | pseudogene (1509/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| JC | 1,476,957 | Δ12 bp | 26.1% | coding (150‑161/606 nt) | azoR ← | NADH‑azoreductase, FMN‑dependent |
| RA | 1,702,966 | T→A | 8.6% | R597R (CGT→CGA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,703,062 | T→A | 13.9% | R629R (CGT→CGA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,703,158 | A→C | 13.3% | R661R (CGA→CGC) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,703,295 | T→A | 11.3% | V707E (GTA→GAA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 2,514,509 | G→T | 5.3% | intergenic (+24/‑23) | valU → / → valY | tRNA‑Val/tRNA‑Val |
| RA | 2,554,344 | C→A | 7.8% | intergenic (+87/‑383) | yffL → / → yffM | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
| RA | 2,762,276 | C→T | 6.0% | L85L (CTG→TTG) ‡ | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,278 | G→A | 6.1% | L85L (CTG→CTA) ‡ | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 3,187,952 | A→G | 6.2% | intergenic (+68/+130) | yqiK → / ← sibD | PHB family membrane protein, function unknown/sRNA antisense regulator of toxic IbsD protein |
| RA | 3,263,328 | A→C | 6.8% | intergenic (+367/+247) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,263,441 | A→C | 6.4% | intergenic (+480/+134) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,263,556 | G→C | 5.9% | intergenic (+595/+19) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,462,400 | A→G | 7.8% | S271S (AGT→AGC) | chiA ← | periplasmic endochitinase |
| RA | 3,462,438 | C→A | 6.9% | A259S (GCA→TCA) | chiA ← | periplasmic endochitinase |
| RA | 3,462,439 | C→A | 7.9% | A258A (GCG→GCT) ‡ | chiA ← | periplasmic endochitinase |
| RA | 3,462,441 | C→A | 7.5% | A258S (GCG→TCG) ‡ | chiA ← | periplasmic endochitinase |
| RA | 3,462,676 | A→T | 6.5% | A179A (GCT→GCA) | chiA ← | periplasmic endochitinase |
| RA | 3,985,309 | T→C | 45.7% | L266P (CTG→CCG) | cyaA → | adenylate cyclase |
| RA | 3,986,739 | C→T | 27.8% | Q743* (CAG→TAG) | cyaA → | adenylate cyclase |
| RA | 3,991,409 | A→C | 5.7% | S23R (AGC→CGC) | uvrD → | DNA‑dependent ATPase I and helicase II |
| RA | 3,991,416 | T→G | 9.0% | L25R (CTT→CGT) | uvrD → | DNA‑dependent ATPase I and helicase II |
| RA | 4,076,055 | T→G | 6.4% | Q22P (CAG→CCG) | fdoH ← | formate dehydrogenase‑O, Fe‑S subunit |
| RA | 4,106,456 | C→T | 44.8% | G232D (GGC→GAC) | glpK ← | glycerol kinase |
| RA | 4,106,459 | C→T | 5.1% | G231D (GGC→GAC) | glpK ← | glycerol kinase |
| RA | 4,106,863 | C→A | 41.6% | K96N (AAG→AAT) | glpK ← | glycerol kinase |
| RA | 4,176,299 | A→G | 100% | N341S (AAC→AGC) | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,264,220 | C→T | 7.8% | H56H (CAC→CAT) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,226 | T→G | 12.1% | V58V (GTT→GTG) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,241 | A→G | 12.0% | K63K (AAA→AAG) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,244 | G→C | 10.2% | L64L (CTG→CTC) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,247 | A→G | 10.0% | A65A (GCA→GCG) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,256 | G→A | 11.5% | A68A (GCG→GCA) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,257 | A→G | 11.4% | S69G (AGC→GGC) ‡ | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,259 | C→T | 11.3% | S69S (AGC→AGT) ‡ | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,264 | A→G | 11.4% | Y71C (TAT→TGT) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,271 | T→C | 8.0% | R73R (CGT→CGC) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,274 | A→G | 7.3% | K74K (AAA→AAG) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,277 | T→C | 6.3% | G75G (GGT→GGC) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,278 | T→G | 6.7% | S76A (TCT→GCT) ‡ | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,280 | T→G | 6.2% | S76S (TCT→TCG) ‡ | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,264,286 | T→C | 5.6% | V78V (GTT→GTC) | ssb → | single‑stranded DNA‑binding protein |
| RA | 4,382,371 | G→T | 10.8% | intergenic (+7/‑29) | glyX → / → glyY | tRNA‑Gly/tRNA‑Gly |
| RA | 4,586,312 | T→G | 10.2% | V169G (GTC→GGC) | yjjN → | L‑galactonate oxidoreductase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP009273 | 246563 | 247250 | 688 | 106 [95] | [99] 107 | lafU | pseudogene, lateral flagellar motor protein fragment |
| * | * | ÷ | CP009273 | 2597319 | 2598143 | 825 | 130 [87] | [101] 109 | hyfC | hydrogenase 4, membrane subunit |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 253 | 322 (0.840) | 24 (0.080) | 16/92 | NT | 7.2% | coding (64/66 nt) | thrL | thr operon leader peptide |
| ? | CP009273 | = 278 | 354 (1.120) | intergenic (+23/‑59) | thrL/thrA | thr operon leader peptide/Bifunctional aspartokinase/homoserine dehydrogenase 1 | |||||
| * | ? | CP009273 | = 64557 | 292 (0.760) | 16 (0.050) | 6/94 | NT | 5.5% | coding (1224/2352 nt) | polB | DNA polymerase II |
| ? | CP009273 | = 64577 | 305 (0.940) | coding (1204/2352 nt) | polB | DNA polymerase II | |||||
| * | ? | CP009273 | 66560 = | 287 (0.750) | 369 (1.580) +22 bp |
38/68 | NT | 61.0% | intergenic (‑28/‑314) | araD/araC | pseudogene, truncated/ara regulon transcriptional activator; autorepressor |
| ? | CP009273 | = 3509273 | 489 (1.270) | intergenic (‑1/+106) | dam/damX | DNA adenine methyltransferase/cell division protein that binds to the septal ring | |||||
| * | ? | CP009273 | 108768 = | 280 (0.730) | 22 (0.060) | 7/100 | NT | 8.4% | coding (319/744 nt) | zapD | FtsZ stabilizer |
| ? | CP009273 | 108799 = | 228 (0.660) | coding (288/744 nt) | zapD | FtsZ stabilizer | |||||
| * | ? | CP009273 | 138464 = | NA (NA) | 7 (0.020) | 6/94 | NT | NA | intergenic (+10/+31) | hpt/can | hypoxanthine phosphoribosyltransferase/carbonic anhydrase |
| ? | CP009273 | 138487 = | NA (NA) | intergenic (+33/+8) | hpt/can | hypoxanthine phosphoribosyltransferase/carbonic anhydrase | |||||
| * | ? | CP009273 | = 138472 | NA (NA) | 3 (0.010) | 3/94 | NT | NA | noncoding (8/21 nt) | REP11 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP11 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 138477 | NA (NA) | noncoding (13/21 nt) | REP11 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP11 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | = 173463 | NA (NA) | 6 (0.020) | 3/88 | NT | NA | noncoding (8/19 nt) | REP14 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP14 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 173466 | NA (NA) | noncoding (11/19 nt) | REP14 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP14 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | 220637 = | NA (NA) | 3 (0.010) | 3/106 | NT | NA | noncoding (380/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | CP009273 | 220658 = | NA (NA) | noncoding (401/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | CP009273 | 221943 = | NA (NA) | 37 (0.110) | 12/94 | NT | NA | noncoding (76/77 nt) | ileV | tRNA‑Ile |
| ? | CP009273 | 221964 = | NA (NA) | intergenic (+20/‑23) | ileV/alaV | tRNA‑Ile/tRNA‑Ala | |||||
| * | ? | CP009273 | 248296 = | 83 (0.220) | 10 (0.030) | 5/96 | NT | 12.0% | coding (912/1056 nt) | dinB | DNA polymerase IV |
| ? | CP009273 | 248360 = | 76 (0.230) | coding (976/1056 nt) | dinB | DNA polymerase IV | |||||
| * | ? | CP009273 | 281585 = | 195 (0.510) | 9 (0.030) | 6/96 | NT | 5.7% | coding (480/1383 nt) | yagG | CP4‑6 prophage; putative sugar transporter |
| ? | CP009273 | 281607 = | 132 (0.400) | coding (502/1383 nt) | yagG | CP4‑6 prophage; putative sugar transporter | |||||
| * | ? | CP009273 | = 353255 | NA (NA) | 6 (0.020) | 3/98 | NT | NA | noncoding (61/79 nt) | REP27 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP27 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | CP009273 | = 353266 | NA (NA) | noncoding (72/79 nt) | REP27 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP27 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | CP009273 | 360070 = | 298 (0.770) | 142 (0.490) +CTGATCAGTGAATT |
16/84 | NT | 38.0% | intergenic (‑4/+591) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 561564 | 319 (0.830) | pseudogene (269/279 nt) | exoD | pseudogene, DLP12 prophage; phage‑type exonuclease family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 360096 | 311 (0.810) | 430 (1.140) | 25/110 | NT | 52.3% | intergenic (‑30/+565) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | 3508417 = | 480 (1.270) | coding (2/678 nt) | rpe | D‑ribulose‑5‑phosphate 3‑epimerase | |||||
| * | ? | CP009273 | 360104 = | 296 (0.770) | 452 (1.170) | 69/112 | NT | 60.4% | intergenic (‑38/+557) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 360286 | NA (NA) | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor | |||||
| * | ? | CP009273 | 360168 = | NA (NA) | 54 (0.170) | 11/94 | NT | NA | intergenic (‑102/+493) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | 360191 = | NA (NA) | intergenic (‑125/+470) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor | |||||
| * | ? | CP009273 | 372791 = | NA (NA) | 4 (0.010) | 3/98 | NT | NA | noncoding (1/187 nt) | REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | CP009273 | 372824 = | NA (NA) | noncoding (34/187 nt) | REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences | |||||
| * | ? | CP009273 | 376748 = | NA (NA) | 19 (0.060) | 10/94 | NT | NA | intergenic (‑33/‑59) | yaiX/insC1 | pseudogene, interrupted by IS2A, acetyltransferase homolog; nonfunctional; interruped by IS2; putative transferase/IS2 repressor TnpA |
| ? | CP009273 | 376768 = | NA (NA) | intergenic (‑53/‑39) | yaiX/insC1 | pseudogene, interrupted by IS2A, acetyltransferase homolog; nonfunctional; interruped by IS2; putative transferase/IS2 repressor TnpA | |||||
| * | ? | CP009273 | = 377145 | NA (NA) | 19 (0.060) | 5/94 | NT | NA | coding (339/366 nt) coding (16/906 nt) |
insC1 insD1 |
IS2 repressor TnpA IS2 transposase TnpB |
| ? | CP009273 | = 377199 | NA (NA) | coding (70/906 nt) | insD1 | IS2 transposase TnpB | |||||
| * | ? | CP009273 | = 403544 | 424 (1.100) | 23 (0.070) | 9/96 | NT | 5.2% | coding (661/678 nt) | aroM | AroM family protein |
| ? | CP009273 | = 403571 | 472 (1.430) | intergenic (+10/‑62) | aroM/yaiE | AroM family protein/UPF0345 family protein | |||||
| * | ? | CP009273 | = 410282 | 278 (0.720) | 27 (0.080) | 10/98 | NT | 9.6% | coding (928/3147 nt) | sbcC | exonuclease, dsDNA, ATP‑dependent |
| ? | CP009273 | = 410288 | 265 (0.790) | coding (922/3147 nt) | sbcC | exonuclease, dsDNA, ATP‑dependent | |||||
| * | ? | CP009273 | = 442683 | 305 (0.790) | 38 (0.120) | 10/90 | NT | 10.7% | coding (479/891 nt) | cyoE | protoheme IX farnesyltransferase |
| ? | CP009273 | = 442722 | 388 (1.250) | coding (440/891 nt) | cyoE | protoheme IX farnesyltransferase | |||||
| * | ? | CP009273 | 447701 = | 337 (0.880) | 17 (0.050) | 9/96 | NT | 6.0% | coding (1301/1476 nt) | ampG | muropeptide transporter |
| ? | CP009273 | 447798 = | 246 (0.750) | coding (1204/1476 nt) | ampG | muropeptide transporter | |||||
| * | ? | CP009273 | = 596500 | 172 (0.450) | 9 (0.030) | 5/94 | NT | 6.1% | coding (2331/3144 nt) | cusA | copper/silver efflux system, membrane component |
| ? | CP009273 | = 596517 | 135 (0.420) | coding (2348/3144 nt) | cusA | copper/silver efflux system, membrane component | |||||
| * | ? | CP009273 | = 610426 | 149 (0.390) | 20 (0.060) | 5/96 | NT | 11.1% | coding (814/3882 nt) | entF | enterobactin synthase multienzyme complex component, ATP‑dependent |
| ? | CP009273 | = 610453 | 192 (0.580) | coding (841/3882 nt) | entF | enterobactin synthase multienzyme complex component, ATP‑dependent | |||||
| * | ? | CP009273 | = 619586 | 247 (0.640) | 11 (0.030) | 6/94 | NT | 5.1% | coding (381/957 nt) | fepB | iron‑enterobactin transporter subunit |
| ? | CP009273 | = 619639 | 202 (0.630) | coding (328/957 nt) | fepB | iron‑enterobactin transporter subunit | |||||
| * | ? | CP009273 | = 678193 | 121 (0.310) | 12 (0.040) | 7/94 | NT | 10.3% | coding (657/1671 nt) | hscC | Hsp70 family chaperone Hsc62, binds to RpoD and inhibits transcription |
| ? | CP009273 | = 678254 | 108 (0.330) | coding (596/1671 nt) | hscC | Hsp70 family chaperone Hsc62, binds to RpoD and inhibits transcription | |||||
| * | ? | CP009273 | 691855 = | 282 (0.730) | 34 (0.100) +TAATG |
4/102 | NT | 9.9% | intergenic (+123/+31) | ubiF/glnX | 2‑octaprenyl‑3‑methyl‑6‑methoxy‑1,4‑benzoquinol oxygenase/tRNA‑Gln |
| ? | CP009273 | 691998 = | 398 (1.030) | noncoding (75/75 nt) | glnV | tRNA‑Gln | |||||
| * | ? | CP009273 | 699831 = | 272 (0.710) | 25 (0.080) | 8/96 | NT | 10.4% | coding (432/1947 nt) | nagE | fused N‑acetyl glucosamine specific PTS enzyme: IIC, IIB, and IIA components |
| ? | CP009273 | 699861 = | 196 (0.590) | coding (462/1947 nt) | nagE | fused N‑acetyl glucosamine specific PTS enzyme: IIC, IIB, and IIA components | |||||
| * | ? | CP009273 | = 725721 | NA (NA) | 5 (0.010) +G |
3/110 | NT | NA | coding (683/4194 nt) | rhsC | Rhs family putative polymorphic toxin |
| ? | CP009273 | = 725740 | NA (NA) | coding (702/4194 nt) | rhsC | Rhs family putative polymorphic toxin | |||||
| * | ? | CP009273 | = 725724 | NA (NA) | 17 (0.050) | 12/94 | NT | NA | coding (686/4194 nt) | rhsC | Rhs family putative polymorphic toxin |
| ? | CP009273 | = 725738 | NA (NA) | coding (700/4194 nt) | rhsC | Rhs family putative polymorphic toxin | |||||
| * | ? | CP009273 | 727594 = | NA (NA) | 3 (0.010) | 3/102 | NT | NA | coding (2556/4194 nt) | rhsC | Rhs family putative polymorphic toxin |
| ? | CP009273 | 727660 = | NA (NA) | coding (2622/4194 nt) | rhsC | Rhs family putative polymorphic toxin | |||||
| * | ? | CP009273 | = 902734 | 153 (0.400) | 16 (0.050) | 8/98 | NT | 10.2% | coding (1005/1431 nt) | ybjT | putative NAD‑dependent oxidoreductase |
| ? | CP009273 | = 902785 | 148 (0.440) | coding (954/1431 nt) | ybjT | putative NAD‑dependent oxidoreductase | |||||
| * | ? | CP009273 | 910536 = | NA (NA) | 8 (0.030) | 4/92 | NT | 6.6% | intergenic (‑223/+272) | ybjE/aqpZ | putative transporter/aquaporin Z |
| ? | CP009273 | 910538 = | 137 (0.360) | intergenic (‑225/+270) | ybjE/aqpZ | putative transporter/aquaporin Z | |||||
| * | ? | CP009273 | 910575 = | 67 (0.170) | 5 (0.010) | 4/98 | NT | 8.3% | intergenic (‑262/+233) | ybjE/aqpZ | putative transporter/aquaporin Z |
| ? | CP009273 | = 2222782 | 52 (0.150) | intergenic (+238/+135) | yohP/dusC | uncharacterized protein/tRNA‑dihydrouridine synthase C | |||||
| * | ? | CP009273 | = 1039965 | 240 (0.620) | 12 (0.040) | 6/98 | NT | 5.2% | coding (168/447 nt) | etp | Protein‑tyrosine‑phosphatase, role in O‑antigen capsule formation; dephosphorylates Etk‑P |
| ? | CP009273 | = 1039970 | 225 (0.670) | coding (163/447 nt) | etp | Protein‑tyrosine‑phosphatase, role in O‑antigen capsule formation; dephosphorylates Etk‑P | |||||
| * | ? | CP009273 | 1070341 = | NA (NA) | 6 (0.020) | 5/94 | NT | NA | noncoding (1/28 nt) | REP93 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP93 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | 1070369 = | NA (NA) | intergenic (+33/+7) | rutR/putA | rut operon transcriptional repressor for/fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase | |||||
| * | ? | CP009273 | 1092806 = | NA (NA) | 7 (0.020) | 5/106 | NT | NA | intergenic (+521/+215) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | CP009273 | 1093009 = | NA (NA) | intergenic (+724/+12) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | CP009273 | 1101408 = | 142 (0.370) | 19 (0.060) | 8/94 | NT | 14.0% | coding (133/534 nt) | ymdB | O‑acetyl‑ADP‑ribose deacetylase; RNase III inhibitor during cold shock; putative cardiolipin synthase C regulatory subunit |
| ? | CP009273 | 1101450 = | 114 (0.350) | coding (175/534 nt) | ymdB | O‑acetyl‑ADP‑ribose deacetylase; RNase III inhibitor during cold shock; putative cardiolipin synthase C regulatory subunit | |||||
| * | ? | CP009273 | 1111080 = | NA (NA) | 12 (0.040) | 3/90 | NT | NA | intergenic (‑134/+38) | mdtG/lpxL | putative drug efflux system protein/lauryl‑acyl carrier protein (ACP)‑dependent acyltransferase |
| ? | CP009273 | 1111111 = | NA (NA) | intergenic (‑165/+7) | mdtG/lpxL | putative drug efflux system protein/lauryl‑acyl carrier protein (ACP)‑dependent acyltransferase | |||||
| * | ? | CP009273 | = 1161581 | 174 (0.450) | 22 (0.080) | 11/82 | NT | 15.9% | coding (41/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase |
| ? | CP009273 | 1162077 = | 106 (0.380) | coding (537/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase | |||||
| * | ? | CP009273 | = 1161581 | 174 (0.450) | 12 (0.030) +A |
6/110 | NT | 7.6% | coding (41/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase |
| ? | CP009273 | 1162078 = | 125 (0.320) | coding (538/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase | |||||
| * | ? | CP009273 | = 1182545 | NA (NA) | 4 (0.010) | 4/90 | NT | NA | noncoding (7/24 nt) | REP105 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP105 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 1182548 | NA (NA) | noncoding (10/24 nt) | REP105 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP105 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | 1203246 = | 263 (0.680) | 94 (0.340) | 31/80 | NT | 37.8% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | 1205075 = | 122 (0.440) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 1203261 | 295 (0.770) | 110 (0.400) | 26/80 | NT | 39.8% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | = 1205058 | 122 (0.440) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | 1209039 = | 375 (0.970) | 25 (0.080) | 11/92 | NT | 8.5% | coding (477/732 nt) | bluR | repressor of blue light‑responsive genes |
| ? | CP009273 | 1209089 = | 229 (0.720) | coding (427/732 nt) | bluR | repressor of blue light‑responsive genes | |||||
| * | ? | CP009273 | 1228601 = | 342 (0.890) | 18 (0.060) | 6/94 | NT | 6.5% | intergenic (‑115/+31) | dsbB/nhaB | oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I/sodium:proton antiporter |
| ? | CP009273 | 1228623 = | 228 (0.710) | intergenic (‑137/+9) | dsbB/nhaB | oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I/sodium:proton antiporter | |||||
| * | ? | CP009273 | 1238033 = | 523 (1.360) | 25 (0.100) | 15/76 | NT | 7.9% | coding (504/915 nt) | ldcA | murein tetrapeptide carboxypeptidase; LD‑carboxypeptidase A |
| ? | CP009273 | 1238051 = | 228 (0.870) | coding (486/915 nt) | ldcA | murein tetrapeptide carboxypeptidase; LD‑carboxypeptidase A | |||||
| * | ? | CP009273 | 1240767 = | 303 (0.790) | 17 (0.050) | 10/96 | NT | 6.3% | coding (152/441 nt) | ycgY | uncharacterized protein |
| ? | CP009273 | = 1302830 | 250 (0.760) | coding (73/1461 nt) | clsA | cardiolipin synthase 1 | |||||
| * | ? | CP009273 | = 1280805 | 343 (0.890) | 18 (0.050) | 7/96 | NT | 6.3% | coding (211/711 nt) | narJ | molybdenum‑cofactor‑assembly chaperone subunit (delta subunit) of nitrate reductase 1 |
| ? | CP009273 | = 1280852 | 243 (0.740) | coding (258/711 nt) | narJ | molybdenum‑cofactor‑assembly chaperone subunit (delta subunit) of nitrate reductase 1 | |||||
| * | ? | CP009273 | 1314763 = | 211 (0.550) | 21 (0.060) | 8/94 | NT | 11.3% | coding (879/1596 nt) | trpD | fused glutamine amidotransferase (component II) of anthranilate synthase/anthranilate phosphoribosyl transferase |
| ? | CP009273 | 1314808 = | 153 (0.470) | coding (834/1596 nt) | trpD | fused glutamine amidotransferase (component II) of anthranilate synthase/anthranilate phosphoribosyl transferase | |||||
| * | ? | CP009273 | = 1426905 | NA (NA) | 18 (0.050) | 10/96 | NT | 100% | coding (238/576 nt) | tfaR | Rac prophage; putative tail fiber assembly protein |
| ? | CP009273 | 1628833 = | 0 (0.000) | coding (310/576 nt) | tfaQ | Qin prophage; putative tail fiber assembly protein | |||||
| * | ? | CP009273 | 1505831 = | 268 (0.700) | 15 (0.050) | 9/94 | NT | 6.5% | intergenic (+165/‑80) | ydcR/ydcS | putative DNA‑binding transcriptional regulator/putative amino transferase/polyhydroxybutyrate (PHB) synthase, ABC transporter periplasmic binding protein homolog |
| ? | CP009273 | 1505880 = | 205 (0.630) | intergenic (+214/‑31) | ydcR/ydcS | putative DNA‑binding transcriptional regulator/putative amino transferase/polyhydroxybutyrate (PHB) synthase, ABC transporter periplasmic binding protein homolog | |||||
| * | ? | CP009273 | = 1546399 | NA (NA) | 3 (0.010) | 3/98 | NT | NA | noncoding (72/97 nt) | RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 1546424 | NA (NA) | noncoding (97/97 nt) | RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | CP009273 | 1641311 = | 328 (0.850) | 16 (0.050) | 12/90 | NT | 6.1% | intergenic (+317/+120) | flxA/intK | Qin prophage; uncharacterized protein/pseudogene, integrase fragment, Qin prophage;Phage or Prophage Related |
| ? | CP009273 | 1641377 = | 226 (0.730) | intergenic (+383/+54) | flxA/intK | Qin prophage; uncharacterized protein/pseudogene, integrase fragment, Qin prophage;Phage or Prophage Related | |||||
| * | ? | CP009273 | 1685627 = | 187 (0.490) | 11 (0.040) | 7/88 | NT | 7.0% | intergenic (+10/+216) | ydgA/uidC | DUF945 family protein/putative outer membrane porin for beta‑glucuronides porin protein |
| ? | CP009273 | 1685659 = | NA (NA) | intergenic (+42/+184) | ydgA/uidC | DUF945 family protein/putative outer membrane porin for beta‑glucuronides porin protein | |||||
| * | ? | CP009273 | 1723413 = | 244 (0.630) | 10 (0.030) | 5/94 | NT | 5.3% | coding (70/4617 nt) | lhr | putative ATP‑dependent helicase |
| ? | CP009273 | 1723475 = | 154 (0.480) | coding (132/4617 nt) | lhr | putative ATP‑dependent helicase | |||||
| * | ? | CP009273 | = 1823129 | 160 (0.420) | 21 (0.060) | 9/94 | NT | 12.6% | coding (863/1479 nt) | astD | succinylglutamic semialdehyde dehydrogenase |
| ? | CP009273 | = 1823150 | 156 (0.480) | coding (842/1479 nt) | astD | succinylglutamic semialdehyde dehydrogenase | |||||
| * | ? | CP009273 | = 1870380 | 283 (0.740) | 14 (0.040) | 6/94 | NT | 5.0% | coding (451/1182 nt) | yeaN | putative transporter |
| ? | CP009273 | = 1870397 | 289 (0.890) | coding (468/1182 nt) | yeaN | putative transporter | |||||
| * | ? | CP009273 | = 1871532 | 284 (0.740) | 19 (0.060) | 6/96 | NT | 7.4% | intergenic (+19/+3) | yeaO/yoaF | DUF488 family protein/DUF333 family outer membrane lipoprotein |
| ? | CP009273 | = 1871547 | 233 (0.710) | coding (243/255 nt) | yoaF | DUF333 family outer membrane lipoprotein | |||||
| * | ? | CP009273 | = 1940291 | 208 (0.540) | 23 (0.070) | 10/96 | NT | 7.8% | intergenic (‑58/+81) | ruvA/yobI | component of RuvABC resolvasome, regulatory subunit/uncharacterized protein |
| ? | CP009273 | = 1940293 | 366 (1.110) | intergenic (‑60/+79) | ruvA/yobI | component of RuvABC resolvasome, regulatory subunit/uncharacterized protein | |||||
| * | ? | CP009273 | 1958516 = | 297 (0.770) | 17 (0.050) | 7/96 | NT | 6.6% | coding (792/2079 nt) | flhA | putative flagellar export pore protein |
| ? | CP009273 | 1958598 = | 223 (0.680) | coding (710/2079 nt) | flhA | putative flagellar export pore protein | |||||
| * | ? | CP009273 | = 2145164 | NA (NA) | 11 (0.040) | 6/90 | NT | NA | noncoding (10/28 nt) | REP148 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP148 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 2145172 | NA (NA) | noncoding (18/28 nt) | REP148 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP148 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | = 2191253 | 196 (0.510) | 16 (0.050) | 9/90 | NT | 7.5% | pseudogene (1301/2847 nt) | yehH | DUF4132 family pseudogene; defective yehI paralog; molybdate metabolism regulator, first fragment; molybdate metabolism regulator, second fragment 2; yehI' molR mutations have phenotypes and the N‑terminal molR fragment of yehI' may be expressed and may have retained or evolved MolR function |
| ? | CP009273 | = 2191263 | 236 (0.760) | pseudogene (1311/2847 nt) | yehH | DUF4132 family pseudogene; defective yehI paralog; molybdate metabolism regulator, first fragment; molybdate metabolism regulator, second fragment 2; yehI' molR mutations have phenotypes and the N‑terminal molR fragment of yehI' may be expressed and may have retained or evolved MolR function | |||||
| * | ? | CP009273 | 2269311 = | 334 (0.870) | 21 (0.060) | 8/96 | NT | 7.3% | coding (560/1026 nt) | yejE | microcin C transporter YejABEF, permease subunit; ABC family |
| ? | CP009273 | 2269347 = | 245 (0.740) | coding (596/1026 nt) | yejE | microcin C transporter YejABEF, permease subunit; ABC family | |||||
| * | ? | CP009273 | 2279605 = | 377 (0.980) | 15 (0.050) | 7/86 | NT | 5.9% | coding (1751/1761 nt) | yejM | essential inner membrane DUF3413 domain‑containing protein; lipid A production and membrane permeability factor |
| ? | CP009273 | 2279638 = | 193 (0.650) | intergenic (+23/‑52) | yejM/proL | essential inner membrane DUF3413 domain‑containing protein; lipid A production and membrane permeability factor/tRNA‑Pro | |||||
| * | ? | CP009273 | 2394156 = | 277 (0.720) | 14 (0.040) | 6/98 | NT | 5.4% | coding (879/1338 nt) | nuoF | NADH:ubiquinone oxidoreductase, chain F |
| ? | CP009273 | 2394171 = | 250 (0.740) | coding (864/1338 nt) | nuoF | NADH:ubiquinone oxidoreductase, chain F | |||||
| * | ? | CP009273 | 2436000 = | 228 (0.590) | 19 (0.060) | 7/94 | NT | 8.2% | coding (758/2007 nt) | mnmC | fused 5‑methylaminomethyl‑2‑thiouridine‑forming enzyme methyltransferase and FAD‑dependent demodification enzyme |
| ? | CP009273 | 2436103 = | 232 (0.720) | coding (861/2007 nt) | mnmC | fused 5‑methylaminomethyl‑2‑thiouridine‑forming enzyme methyltransferase and FAD‑dependent demodification enzyme | |||||
| * | ? | CP009273 | 2495412 = | 241 (0.630) | 8 (0.030) | 4/92 | NT | 5.0% | coding (804/858 nt) | ypdC | putative DNA‑binding protein |
| ? | CP009273 | 2495438 = | 105 (0.330) | coding (830/858 nt) | ypdC | putative DNA‑binding protein | |||||
| * | ? | CP009273 | = 2540715 | 194 (0.500) | 16 (0.050) | 5/94 | NT | 6.8% | coding (684/1425 nt) | murP | N‑acetylmuramic acid permease, EIIBC component, PTS system |
| ? | CP009273 | = 2540730 | 278 (0.860) | coding (699/1425 nt) | murP | N‑acetylmuramic acid permease, EIIBC component, PTS system | |||||
| * | ? | CP009273 | 2590222 = | 288 (0.750) | 13 (0.040) | 7/90 | NT | 5.6% | intergenic (‑126/+42) | ypfJ/purC | putative neutral zinc metallopeptidase/phosphoribosylaminoimidazole‑succinocarboxamide synthetase |
| ? | CP009273 | 2590249 = | 207 (0.670) | intergenic (‑153/+15) | ypfJ/purC | putative neutral zinc metallopeptidase/phosphoribosylaminoimidazole‑succinocarboxamide synthetase | |||||
| * | ? | CP009273 | = 2636459 | 348 (0.900) | 16 (0.060) | 6/84 | NT | 5.1% | intergenic (‑256/+29) | rodZ/rlmN | MreB assembly cytoskeletal protein/dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM‑dependent |
| ? | CP009273 | = 2636469 | 332 (1.150) | intergenic (‑266/+19) | rodZ/rlmN | MreB assembly cytoskeletal protein/dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM‑dependent | |||||
| * | ? | CP009273 | = 2640581 | 260 (0.680) | 13 (0.040) | 7/98 | NT | 5.2% | coding (104/2313 nt) | pbpC | penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain |
| ? | CP009273 | = 2640609 | 251 (0.750) | coding (76/2313 nt) | pbpC | penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain | |||||
| * | ? | CP009273 | 2640634 = | 318 (0.830) | 12 (0.040) | 9/94 | NT | 5.0% | coding (51/2313 nt) | pbpC | penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain |
| ? | CP009273 | 2640664 = | 185 (0.570) | coding (21/2313 nt) | pbpC | penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain | |||||
| * | ? | CP009273 | = 2680401 | NA (NA) | 7 (0.020) | 3/90 | NT | NA | noncoding (8/20 nt) | REP187 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP187 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 2680405 | NA (NA) | noncoding (12/20 nt) | REP187 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP187 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | 2681763 = | 277 (0.720) | 12 (0.040) | 7/94 | NT | 5.2% | coding (400/1335 nt) | glrR | response regulator regulating glmY sRNA in two‑component system with sensor protein GlrK |
| ? | CP009273 | 2681792 = | 209 (0.650) | coding (371/1335 nt) | glrR | response regulator regulating glmY sRNA in two‑component system with sensor protein GlrK | |||||
| * | ? | CP009273 | = 2691481 | 362 (0.940) | 29 (0.080) | 15/100 | NT | 7.8% | coding (429/636 nt) | pgpC | phosphatidylglycerophosphatase C, membrane bound |
| ? | CP009273 | = 2691501 | 364 (1.060) | coding (409/636 nt) | pgpC | phosphatidylglycerophosphatase C, membrane bound | |||||
| * | ? | CP009273 | 2747582 = | 310 (0.810) | 29 (0.090) | 6/94 | NT | 11.2% | coding (76/291 nt) | ratB | UPF0125 family protein |
| ? | CP009273 | 2747605 = | 200 (0.620) | coding (53/291 nt) | ratB | UPF0125 family protein | |||||
| * | ? | CP009273 | = 2749471 | 273 (0.710) | 23 (0.070) | 9/90 | NT | 9.8% | intergenic (+734/‑47) | smpB/intA | trans‑translation protein/CP4‑57 prophage; integrase |
| ? | CP009273 | = 2749488 | 206 (0.670) | intergenic (+751/‑30) | smpB/intA | trans‑translation protein/CP4‑57 prophage; integrase | |||||
| * | ? | CP009273 | = 2787501 | NA (NA) | 5 (0.010) | 5/98 | NT | NA | noncoding (115/136 nt) | REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | CP009273 | = 2787551 | NA (NA) | intergenic (+177/‑61) | gabT/gabP | 4‑aminobutyrate aminotransferase, PLP‑dependent/gamma‑aminobutyrate transporter | |||||
| * | ? | CP009273 | 2787742 = | 396 (1.030) | 33 (0.100) | 10/96 | NT | 9.8% | coding (131/1401 nt) | gabP | gamma‑aminobutyrate transporter |
| ? | CP009273 | 2787778 = | 271 (0.820) | coding (167/1401 nt) | gabP | gamma‑aminobutyrate transporter | |||||
| * | ? | CP009273 | 2791412 = | NA (NA) | 6 (0.020) | 4/100 | NT | NA | noncoding (1/30 nt) | REP192 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP192 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | 2791442 = | NA (NA) | intergenic (+39/+8) | ygaP/stpA | DUF2892 family inner membrane rhodanese/DNA binding protein, nucleoid‑associated | |||||
| * | ? | CP009273 | 2845465 = | 227 (0.590) | 18 (0.050) | 10/96 | NT | 6.5% | coding (243/273 nt) | hypC | hydrogenase maturation protein |
| ? | CP009273 | 2845525 = | 320 (0.970) | coding (31/1122 nt) | hypD | hydrogenase maturation protein | |||||
| * | ? | CP009273 | 2925176 = | NA (NA) | 11 (0.030) | 6/92 | NT | NA | noncoding (1/30 nt) | REP203 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP203 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | 2925206 = | NA (NA) | intergenic (+37/+18) | ygdG/fucO | Ssb‑binding protein, misidentified as ExoIX/L‑1,2‑propanediol oxidoreductase | |||||
| * | ? | CP009273 | 2930783 = | NA (NA) | 8 (0.030) | 5/90 | NT | NA | intergenic (+65/‑14) | fucI/fucK | L‑fucose isomerase/L‑fuculokinase |
| ? | CP009273 | 2930811 = | NA (NA) | coding (15/1449 nt) | fucK | L‑fuculokinase | |||||
| * | ? | CP009273 | = 2974100 | NA (NA) | 5 (0.020) | 3/90 | NT | NA | noncoding (9/23 nt) | REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 2974105 | NA (NA) | noncoding (14/23 nt) | REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | 3000957 = | 263 (0.680) | 14 (0.050) | 7/80 | NT | 6.7% | coding (89/1197 nt) | ygeX | 2,3‑diaminopropionate ammonia lyase, PLP‑dependent |
| ? | CP009273 | 3000973 = | 199 (0.720) | coding (105/1197 nt) | ygeX | 2,3‑diaminopropionate ammonia lyase, PLP‑dependent | |||||
| * | ? | CP009273 | = 3015939 | 514 (1.340) | 26 (0.080) | 13/96 | NT | 5.9% | coding (1265/2871 nt) | xdhD | putative hypoxanthine oxidase, molybdopterin‑binding/Fe‑S binding |
| ? | CP009273 | = 3015996 | 392 (1.190) | coding (1322/2871 nt) | xdhD | putative hypoxanthine oxidase, molybdopterin‑binding/Fe‑S binding | |||||
| * | ? | CP009273 | 3031308 = | 379 (0.980) | 21 (0.060) | 12/98 | NT | 7.7% | coding (158/1734 nt) | recJ | ssDNA exonuclease, 5' ‑‑> 3'‑specific |
| ? | CP009273 | 3031324 = | 171 (0.510) | coding (142/1734 nt) | recJ | ssDNA exonuclease, 5' ‑‑> 3'‑specific | |||||
| * | ? | CP009273 | 3060669 = | 344 (0.890) | 14 (0.040) | 8/92 | NT | 5.6% | intergenic (‑137/+30) | ygfI/yggE | putative DNA‑binding transcriptional regulator/oxidative stress defense protein |
| ? | CP009273 | 3060693 = | 186 (0.590) | intergenic (‑161/+6) | ygfI/yggE | putative DNA‑binding transcriptional regulator/oxidative stress defense protein | |||||
| * | ? | CP009273 | = 3076151 | NA (NA) | 11 (0.040) +ATTTCGCAGCAATCT |
3/82 | NT | 5.5% | noncoding (103/147 nt) | REP214 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP214 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | CP009273 | 3667798 = | 259 (0.670) | noncoding (58/93 nt) | REP263 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP263 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | CP009273 | = 3087432 | NA (NA) | 3 (0.010) | 3/98 | NT | NA | noncoding (108/125 nt) | REP216 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP216 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | CP009273 | = 3087442 | NA (NA) | noncoding (118/125 nt) | REP216 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP216 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
| * | ? | CP009273 | 3202855 = | NA (NA) | 5 (0.020) | 3/94 | NT | NA | intergenic (+9/+34) | ttdT/tsaD | L‑tartrate/succinate antiporte/tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; glycation binding protein |
| ? | CP009273 | 3202881 = | NA (NA) | intergenic (+35/+8) | ttdT/tsaD | L‑tartrate/succinate antiporte/tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; glycation binding protein | |||||
| * | ? | CP009273 | 3215213 = | 257 (0.670) | 24 (0.070) | 8/96 | NT | 9.3% | coding (389/984 nt) | ebgR | transcriptional repressor |
| ? | CP009273 | 3215274 = | 246 (0.750) | coding (450/984 nt) | ebgR | transcriptional repressor | |||||
| * | ? | CP009273 | 3256491 = | 515 (1.340) | 23 (0.070) | 6/90 | NT | 5.6% | coding (529/1209 nt) | tdcD | propionate kinase/acetate kinase C, anaerobic |
| ? | CP009273 | 3256545 = | 368 (1.190) | coding (475/1209 nt) | tdcD | propionate kinase/acetate kinase C, anaerobic | |||||
| * | ? | CP009273 | 3293574 = | 363 (0.940) | 15 (0.050) | 8/90 | NT | 5.4% | coding (250/303 nt) | yhbQ | GIY‑YIG nuclease superfamily protein |
| ? | CP009273 | 3293608 = | 233 (0.750) | coding (284/303 nt) | yhbQ | GIY‑YIG nuclease superfamily protein | |||||
| * | ? | CP009273 | = 3348965 | 369 (0.960) | 25 (0.080) | 14/96 | NT | 7.4% | coding (882/4461 nt) | gltB | glutamate synthase, large subunit |
| ? | CP009273 | = 3349001 | 307 (0.930) | coding (918/4461 nt) | gltB | glutamate synthase, large subunit | |||||
| * | ? | CP009273 | 3375198 = | 395 (1.030) | 25 (0.080) | 7/94 | NT | 7.4% | coding (1097/1368 nt) | degQ | serine endoprotease, periplasmic |
| ? | CP009273 | 3375228 = | 290 (0.900) | coding (1127/1368 nt) | degQ | serine endoprotease, periplasmic | |||||
| * | ? | CP009273 | = 3385677 | 244 (0.630) | 12 (0.040) | 6/98 | NT | 5.3% | noncoding (243/308 nt) | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences |
| ? | CP009273 | = 3385694 | NA (NA) | noncoding (260/308 nt) | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences | |||||
| * | ? | CP009273 | = 3451774 | 356 (0.920) | 21 (0.060) | 5/96 | NT | 5.4% | coding (77/1482 nt) | gspE | general secretory pathway component, cryptic |
| ? | CP009273 | = 3451779 | 437 (1.320) | coding (82/1482 nt) | gspE | general secretory pathway component, cryptic | |||||
| * | ? | CP009273 | = 3487121 | NA (NA) | 5 (0.010) +C |
5/110 | NT | NA | noncoding (5/26 nt) | REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 3487136 | NA (NA) | noncoding (20/26 nt) | REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | = 3487124 | NA (NA) | 21 (0.060) | 6/96 | NT | NA | noncoding (8/26 nt) | REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 3487134 | NA (NA) | noncoding (18/26 nt) | REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | 3509341 = | 619 (1.610) | 35 (0.110) | 6/94 | NT | 7.6% | intergenic (‑69/+38) | dam/damX | DNA adenine methyltransferase/cell division protein that binds to the septal ring |
| ? | CP009273 | 3509369 = | 334 (1.030) | intergenic (‑97/+10) | dam/damX | DNA adenine methyltransferase/cell division protein that binds to the septal ring | |||||
| * | ? | CP009273 | = 3538010 | 345 (0.900) | 19 (0.060) | 13/94 | NT | 6.0% | coding (194/771 nt) | bioH | pimeloyl‑ACP methyl ester carboxylesterase |
| ? | CP009273 | = 3538051 | 308 (0.950) | coding (153/771 nt) | bioH | pimeloyl‑ACP methyl ester carboxylesterase | |||||
| * | ? | CP009273 | 3556942 = | NA (NA) | 6 (0.020) | 5/98 | NT | NA | noncoding (1/98 nt) | RIP256 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP256 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | 3556967 = | NA (NA) | noncoding (26/98 nt) | RIP256 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP256 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | CP009273 | = 3613129 | NA (NA) | 13 (0.040) | 7/106 | NT | NA | coding (578/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor |
| ? | CP009273 | = 3613200 | NA (NA) | coding (649/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor | |||||
| * | ? | CP009273 | = 3613137 | NA (NA) | 6 (0.020) | 5/98 | NT | NA | coding (586/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor |
| ? | CP009273 | = 3613192 | NA (NA) | coding (641/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor | |||||
| * | ? | CP009273 | 3613276 = | NA (NA) | 27 (0.070) | 13/106 | NT | NA | coding (725/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor |
| ? | CP009273 | 3613329 = | NA (NA) | coding (778/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor | |||||
| * | ? | CP009273 | = 3614228 | NA (NA) | 8 (0.030) | 6/90 | NT | 100% | coding (1677/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor |
| ? | CP009273 | = 3614368 | 0 (0.000) | coding (1817/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor | |||||
| * | ? | CP009273 | = 3615065 | NA (NA) | 6 (0.020) | 5/94 | NT | 100% | coding (2514/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor |
| ? | CP009273 | = 3615271 | 0 (0.000) | coding (2720/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor | |||||
| * | ? | CP009273 | = 3615265 | NA (NA) | 5 (0.010) | 3/100 | NT | 100% | coding (2714/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor |
| ? | CP009273 | = 3615283 | 0 (0.000) | coding (2732/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor | |||||
| * | ? | CP009273 | 3622650 = | 540 (1.400) | 22 (0.070) | 8/96 | NT | 5.4% | coding (249/2736 nt) | rbbA | ribosome‑associated ATPase: ATP‑binding protein/ATP‑binding membrane protein |
| ? | CP009273 | 3622682 = | 304 (0.920) | coding (217/2736 nt) | rbbA | ribosome‑associated ATPase: ATP‑binding protein/ATP‑binding membrane protein | |||||
| * | ? | CP009273 | = 3630213 | 316 (0.820) | 37 (0.130) | 14/84 | NT | 13.9% | coding (558/1203 nt) | yhiN | putative oxidoreductase |
| ? | CP009273 | = 3630199 | 221 (0.770) | coding (572/1203 nt) | yhiN | putative oxidoreductase | |||||
| * | ? | CP009273 | = 3632677 | NA (NA) | 5 (0.010) | 4/112 | NT | NA | intergenic (+176/+68) | pitA/uspB | phosphate transporter, low‑affinity; tellurite importer/universal stress (ethanol tolerance) protein B |
| ? | CP009273 | = 4127852 | NA (NA) | intergenic (‑267/+8) | yijF/gldA | DUF1287 family protein/glycerol dehydrogenase, NAD+ dependent; 1,2‑propanediol:NAD+ oxidoreductase | |||||
| * | ? | CP009273 | 3701734 = | NA (NA) | 21 (0.060) | 8/96 | NT | 15.1% | intergenic (‑669/+242) | dppA/proK | dipeptide transporter/tRNA‑Pro |
| ? | CP009273 | 3701742 = | 138 (0.360) | intergenic (‑677/+234) | dppA/proK | dipeptide transporter/tRNA‑Pro | |||||
| * | ? | CP009273 | = 3701786 | 112 (0.290) | 9 (0.030) | 7/88 | NT | 9.3% | intergenic (‑721/+190) | dppA/proK | dipeptide transporter/tRNA‑Pro |
| ? | CP009273 | = 3701789 | NA (NA) | intergenic (‑724/+187) | dppA/proK | dipeptide transporter/tRNA‑Pro | |||||
| * | ? | CP009273 | 3701790 = | 125 (0.320) | 9 (0.030) | 6/88 | NT | 10.8% | intergenic (‑725/+186) | dppA/proK | dipeptide transporter/tRNA‑Pro |
| ? | CP009273 | 3701955 = | 50 (0.170) | intergenic (‑890/+21) | dppA/proK | dipeptide transporter/tRNA‑Pro | |||||
| * | ? | CP009273 | 3757369 = | 0 (0.000) | 5 (0.020) | 4/96 | NT | 100% | coding (1827/4134 nt) | rhsA | Rhs family protein, putative polymorphic toxin; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor |
| ? | CP009273 | 3757464 = | NA (NA) | coding (1922/4134 nt) | rhsA | Rhs family protein, putative polymorphic toxin; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor | |||||
| * | ? | CP009273 | 3758457 = | NA (NA) | 122 (0.320) | 4/110 | NT | 16.1% | coding (2915/4134 nt) | rhsA | Rhs family protein, putative polymorphic toxin; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor |
| ? | CP009273 | 3760580 = | 647 (1.680) | intergenic (+41/‑1) | yibA/rhsJ | HEAT‑domain lethality reduction protein; putative immunity protein for putative polymorphic toxin RhsA/Rhs‑family protein | |||||
| * | ? | CP009273 | = 3767664 | NA (NA) | 3 (0.010) | 3/98 | NT | NA | noncoding (69/99 nt) | RIP271 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP271 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 3767694 | NA (NA) | noncoding (99/99 nt) | RIP271 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP271 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | CP009273 | 3803672 = | NA (NA) | 4 (0.010) | 3/94 | NT | NA | noncoding (1/22 nt) | REP274 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP274 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | 3803694 = | NA (NA) | intergenic (+30/+9) | coaD/mutM | pantetheine‑phosphate adenylyltransferase/formamidopyrimidine/5‑formyluracil/ 5‑hydroxymethyluracil DNA glycosylase | |||||
| * | ? | CP009273 | = 3820789 | NA (NA) | 3 (0.010) | 3/98 | NT | NA | intergenic (+138/+31) | recG/gltS | ATP‑dependent DNA helicase/glutamate transporter |
| ? | CP009273 | = 3820811 | NA (NA) | intergenic (+160/+9) | recG/gltS | ATP‑dependent DNA helicase/glutamate transporter | |||||
| * | ? | CP009273 | 3832491 = | 262 (0.680) | 20 (0.060) | 7/96 | NT | 8.9% | coding (884/924 nt) | yicL | EamA family inner membrane putative transporter |
| ? | CP009273 | 3832524 = | 186 (0.560) | coding (917/924 nt) | yicL | EamA family inner membrane putative transporter | |||||
| * | ? | CP009273 | = 3849631 | 289 (0.750) | 16 (0.050) | 10/96 | NT | 5.3% | coding (37/348 nt) | yidH | DUF202 family inner membrane protein |
| ? | CP009273 | = 3849640 | 322 (0.980) | coding (28/348 nt) | yidH | DUF202 family inner membrane protein | |||||
| * | ? | CP009273 | 3851553 = | 429 (1.110) | 36 (0.120) | 16/86 | NT | 10.8% | coding (212/1494 nt) | yidJ | sulfatase/phosphatase superfamily protein |
| ? | CP009273 | 3851602 = | 266 (0.900) | coding (163/1494 nt) | yidJ | sulfatase/phosphatase superfamily protein | |||||
| * | ? | CP009273 | 3920778 = | 405 (1.050) | 44 (0.150) | 13/88 | NT | 12.4% | coding (264/993 nt) | asnA | asparagine synthetase A |
| ? | CP009273 | 3920817 = | 304 (1.000) | coding (303/993 nt) | asnA | asparagine synthetase A | |||||
| * | ? | CP009273 | = 3921522 | 431 (1.120) | 25 (0.070) | 5/100 | NT | 6.2% | coding (1442/1452 nt) | viaA | stimulator of RavA ATPase activity; von Willebrand factor domain protein |
| ? | CP009273 | = 3921534 | 370 (1.080) | coding (1430/1452 nt) | viaA | stimulator of RavA ATPase activity; von Willebrand factor domain protein | |||||
| * | ? | CP009273 | 3999175 = | 406 (1.050) | 26 (0.080) | 11/96 | NT | 7.2% | intergenic (+84/‑49) | pldA/recQ | outer membrane phospholipase A/ATP‑dependent DNA helicase |
| ? | CP009273 | 3999197 = | 318 (0.960) | intergenic (+106/‑27) | pldA/recQ | outer membrane phospholipase A/ATP‑dependent DNA helicase | |||||
| * | ? | CP009273 | = 3999963 | 514 (1.340) | 20 (0.060) | 6/98 | NT | 5.0% | coding (740/1830 nt) | recQ | ATP‑dependent DNA helicase |
| ? | CP009273 | = 4000007 | 304 (0.900) | coding (784/1830 nt) | recQ | ATP‑dependent DNA helicase | |||||
| * | ? | CP009273 | = 4047497 | 290 (0.750) | 23 (0.070) | 9/94 | NT | 8.3% | coding (1142/1410 nt) | glnG | fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein |
| ? | CP009273 | = 4047517 | 266 (0.820) | coding (1122/1410 nt) | glnG | fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein | |||||
| * | ? | CP009273 | 4061067 = | 445 (1.160) | 29 (0.090) | 12/94 | NT | 8.2% | coding (1570/2037 nt) | yihQ | alpha‑glucosidase |
| ? | CP009273 | 4061094 = | 272 (0.840) | coding (1543/2037 nt) | yihQ | alpha‑glucosidase | |||||
| * | ? | CP009273 | 4161825 = | NA (NA) | 9 (0.030) | 4/96 | NT | 100% | intergenic (+141/‑160) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding |
| ? | CP009273 | 4161830 = | 0 (0.000) | intergenic (+146/‑155) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding | |||||
| * | ? | CP009273 | 4190073 = | 439 (1.140) | 55 (0.180) | 14/90 | NT | 14.1% | intergenic (+51/‑136) | yjaG/hupA | DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit |
| ? | CP009273 | 4190110 = | 320 (1.030) | intergenic (+88/‑99) | yjaG/hupA | DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit | |||||
| * | ? | CP009273 | 4230085 = | NA (NA) | 6 (0.020) | 5/98 | NT | NA | noncoding (1/37 nt) | REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | 4230118 = | NA (NA) | noncoding (34/37 nt) | REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | = 4243928 | NA (NA) | 5 (0.010) | 4/98 | NT | NA | noncoding (100/130 nt) | RIP317 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP317 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site |
| ? | CP009273 | = 4243958 | NA (NA) | noncoding (130/130 nt) | RIP317 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP317 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | |||||
| * | ? | CP009273 | 4306574 = | 158 (0.410) | 13 (0.040) | 10/98 | NT | 8.6% | coding (462/1137 nt) | phnM | ribophosphonate triphosphate hydrolase |
| ? | CP009273 | 4306632 = | 138 (0.410) | coding (404/1137 nt) | phnM | ribophosphonate triphosphate hydrolase | |||||
| * | ? | CP009273 | = 4308345 | 465 (1.210) | 33 (0.100) | 11/94 | NT | 8.9% | coding (237/759 nt) | phnK | carbon‑phosphorus lyase complex subunit, putative ATP transporter ATP‑binding protein |
| ? | CP009273 | = 4308403 | 288 (0.890) | coding (179/759 nt) | phnK | carbon‑phosphorus lyase complex subunit, putative ATP transporter ATP‑binding protein | |||||
| * | ? | CP009273 | 4311466 = | 471 (1.220) | 23 (0.070) | 11/94 | NT | 6.6% | coding (48/453 nt) | phnG | ribophosphonate triphosphate synthase subunit |
| ? | CP009273 | 4311493 = | 259 (0.800) | coding (21/453 nt) | phnG | ribophosphonate triphosphate synthase subunit | |||||
| * | ? | CP009273 | 4328027 = | 250 (0.650) | 22 (0.070) | 9/96 | NT | 8.1% | intergenic (‑281/+44) | adiY/adiA | adi system transcriptional activator/arginine decarboxylase |
| ? | CP009273 | 4328055 = | 284 (0.860) | intergenic (‑309/+16) | adiY/adiA | adi system transcriptional activator/arginine decarboxylase | |||||
| * | ? | CP009273 | 4388394 = | 379 (0.980) | 18 (0.050) | 11/100 | NT | 5.4% | coding (1166/1848 nt) | mutL | methyl‑directed mismatch repair protein |
| ? | CP009273 | 4388416 = | 294 (0.860) | coding (1188/1848 nt) | mutL | methyl‑directed mismatch repair protein | |||||
| * | ? | CP009273 | 4501871 = | 270 (0.700) | 26 (0.080) | 9/92 | NT | 6.8% | coding (361/957 nt) | fecD | iron‑dicitrate transporter subunit |
| ? | CP009273 | 4501966 = | 494 (1.560) | coding (266/957 nt) | fecD | iron‑dicitrate transporter subunit | |||||
| * | ? | CP009273 | 4506708 = | 332 (0.860) | 22 (0.070) | 11/94 | NT | 7.9% | coding (827/954 nt) | fecR | FecI pro‑sigma factor; transmembrane signal transducer for ferric citrate transport; periplasmic FecA:ferric citrate sensor and cytoplasmic FecI ECF sigma factor activator |
| ? | CP009273 | 4506742 = | 231 (0.710) | coding (793/954 nt) | fecR | FecI pro‑sigma factor; transmembrane signal transducer for ferric citrate transport; periplasmic FecA:ferric citrate sensor and cytoplasmic FecI ECF sigma factor activator | |||||
| * | ? | CP009273 | 4512275 = | 363 (0.940) | 27 (0.090) | 10/92 | NT | 7.6% | coding (1637/1968 nt) | yjhG | putative dehydratase |
| ? | CP009273 | 4512318 = | 354 (1.120) | coding (1594/1968 nt) | yjhG | putative dehydratase | |||||
| * | ? | CP009273 | = 4548130 | 353 (0.920) | 19 (0.060) | 9/88 | NT | 6.3% | intergenic (‑24/+41) | hypT/iadA | hypochlorite‑responsive transcription factor/isoaspartyl dipeptidase |
| ? | CP009273 | = 4548153 | 287 (0.950) | intergenic (‑47/+18) | hypT/iadA | hypochlorite‑responsive transcription factor/isoaspartyl dipeptidase | |||||
| * | ? | CP009273 | 4586926 = | NA (NA) | 3 (0.010) | 3/88 | NT | NA | noncoding (13/39 nt) | REP350 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP350 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | 4586955 = | NA (NA) | intergenic (+126/+12) | yjjN/opgB | L‑galactonate oxidoreductase/phosphoglycerol transferases I and II | |||||
| * | ? | CP009273 | = 4603957 | 233 (0.610) | 12 (0.040) | 7/94 | NT | 5.5% | coding (660/780 nt) | yjjV | putative DNase |
| ? | CP009273 | = 4603970 | 214 (0.660) | coding (673/780 nt) | yjjV | putative DNase | |||||