mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000730 | 512,643 | 0 | A | G | 55.3% | 52.3 / 229.0 | 179 | intergenic (+711/‑150) | recR/rrs1 | recombination protein RecR/16S ribosomal RNA |
| * | CP000730 | 111,516 | 0 | C | A | 37.5% | 143.6 / 113.9 | 112 | Q196K (CAA→AAA) | USA300HOU_0110 | possible staphylococcal tandem lipoprotein |
| * | CP000730 | 111,512 | 0 | A | G | 35.3% | 120.9 / 111.4 | 116 | S194S (TCA→TCG) | USA300HOU_0110 | possible staphylococcal tandem lipoprotein |
| * | CP000730 | 110,660 | 0 | T | A | 20.6% | 246.3 / 57.9 | 102 | I173I (ATT→ATA) | USA300HOU_0109 | staphylococcal tandem lipoprotein |
| Marginal new junction evidence (lowest skew 10 of 89 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 1333783 | 75 (0.930) | 20 (0.320) +30 bp |
17/218 | 4.9 | 26.0% | coding (184/1239 nt) | hflX | GTP‑binding protein |
| ? | CP000730 | 1333814 = | 70 (0.870) | coding (215/1239 nt) | hflX | GTP‑binding protein | |||||
| * | ? | CP000730 | 2080726 = | 72 (0.890) | 12 (0.160) | 10/252 | 8.9 | 15.7% | intergenic (‑194/+49) | USA300HOU_1938/USA300HOU_1939 | hypothetical protein/hypothetical protein |
| ? | CP000730 | 2080759 = | 64 (0.870) | intergenic (‑227/+16) | USA300HOU_1938/USA300HOU_1939 | hypothetical protein/hypothetical protein | |||||
| * | ? | CP000730 | 855629 = | 81 (1.000) | 5 (0.100) +57 bp |
3/164 | 9.5 | 10.7% | intergenic (+160/+29) | USA300HOU_0799/USA300HOU_0800 | hypothetical protein/hypothetical protein |
| ? | CP000730 | 2830190 = | 61 (0.750) | intergenic (+18/+173) | icaC/USA300HOU_2670 | intercellular adhesion protein C/hypothetical protein | |||||
| * | ? | CP000730 | = 1205323 | 63 (0.780) | 46 (0.570) | 10/278 | 9.8 | 39.7% | intergenic (+459/‑365) | yfiE/lspA | possible lactoylglutathione lyase/A8 family signal peptidase II |
| ? | CP000730 | 1205383 = | 77 (0.950) | intergenic (+519/‑305) | yfiE/lspA | possible lactoylglutathione lyase/A8 family signal peptidase II | |||||
| * | ? | CP000730 | 2830190 = | 61 (0.750) | 5 (0.100) +53 bp |
3/172 | 9.9 | 9.8% | intergenic (+18/+173) | icaC/USA300HOU_2670 | intercellular adhesion protein C/hypothetical protein |
| ? | CP000730 | 2866774 = | 87 (1.080) | intergenic (‑173/+280) | USA300HOU_2711/noc | hypothetical membrane protein/possible transcriptional regulator | |||||
| * | ? | CP000730 | 1695023 = | 81 (1.000) | 5 (0.100) +53 bp |
3/172 | 9.9 | 10.2% | coding (119/129 nt) | USA300HOU_1585 | hypothetical protein |
| ? | CP000730 | 2830190 = | 61 (0.750) | intergenic (+18/+173) | icaC/USA300HOU_2670 | intercellular adhesion protein C/hypothetical protein | |||||
| * | ? | CP000730 | = 954748 | 84 (1.040) | 5 (0.100) +52 bp |
3/174 | 10.0 | 9.9% | intergenic (+402/+101) | gudB/glpQ2 | glutamate dehydrogenase/glycerophosphodiester phosphodiesterase |
| ? | CP000730 | 2830190 = | 61 (0.750) | intergenic (+18/+173) | icaC/USA300HOU_2670 | intercellular adhesion protein C/hypothetical protein | |||||
| * | ? | CP000730 | = 1380778 | 71 (0.880) | 5 (0.100) +51 bp |
3/176 | 10.1 | 10.7% | intergenic (+2875/‑300) | sbcC/acnA | exodeoxyribonuclease SbcC/aconitate hydratase |
| ? | CP000730 | 2830190 = | 61 (0.750) | intergenic (+18/+173) | icaC/USA300HOU_2670 | intercellular adhesion protein C/hypothetical protein | |||||
| * | ? | CP000730 | 729254 = | 71 (0.880) | 7 (0.090) | 7/254 | 10.6 | 8.9% | intergenic (+55/‑96) | ykvI/lipA | hypothetical membrane protein/possible S9C family peptidase |
| ? | CP000730 | 729295 = | 79 (1.070) | intergenic (+96/‑55) | ykvI/lipA | hypothetical membrane protein/possible S9C family peptidase | |||||
| * | ? | CP000730 | = 346179 | 79 (0.980) | 3 (0.050) +45 bp |
3/188 | 10.7 | 5.3% | intergenic (+129/‑7) | USA300HOU_0310/USA300HOU_0311 | hypothetical membrane protein/hypothetical protein |
| ? | CP000730 | = 349794 | 80 (0.990) | intergenic (+346/‑240) | USA300HOU_0316/USA300HOU_0317 | hypothetical protein/hypothetical protein | |||||