mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000730 | 512,643 | 0 | A | G | 45.5% | 41.4 / 225.0 | 179 | intergenic (+711/‑150) | recR/rrs1 | recombination protein RecR/16S ribosomal RNA |
| * | CP000730 | 111,512 | 0 | A | G | 28.9% | 163.8 / 76.7 | 121 | S194S (TCA→TCG) | USA300HOU_0110 | possible staphylococcal tandem lipoprotein |
| * | CP000730 | 111,516 | 0 | C | A | 28.9% | 171.3 / 71.9 | 121 | Q196K (CAA→AAA) | USA300HOU_0110 | possible staphylococcal tandem lipoprotein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 1961511 = | 130 (1.410) | 101 (1.150) +TATTTT |
4/268 | 9.2 | 47.3% | intergenic (‑54/+1) | USA300HOU_t0017/USA300HOU_t0018 | tRNA‑Ser/tRNA‑Glu |
| ? | CP000730 | = 1998272 | 105 (1.140) | noncoding (1/76 nt) | USA300HOU_t0050 | tRNA‑Val | |||||
| * | ? | CP000730 | 580739 = | 104 (1.130) | 4 (0.050) | 3/250 | 9.4 | 4.1% | intergenic (+33/‑48) | yacP/comX | hypothetical protein/possible DNA‑binding protein |
| ? | CP000730 | 580788 = | 95 (1.160) | coding (2/570 nt) | comX | possible DNA‑binding protein | |||||
| * | ? | CP000730 | 52495 = | 78 (0.850) | 110 (1.210) +T |
4/278 | 9.4 | 59.6% | intergenic (+105/‑568) | USA300HOU_0043/USA300HOU_0044 | hypothetical membrane protein/possible transcriptional regulator |
| ? | CP000730 | = 52988 | 72 (0.780) | intergenic (+598/‑75) | USA300HOU_0043/USA300HOU_0044 | hypothetical membrane protein/possible transcriptional regulator | |||||
| * | ? | CP000730 | 1179979 = | 89 (0.970) | 6 (0.070) | 3/252 | 9.5 | 6.9% | intergenic (+235/+70) | USA300HOU_1109/ydiA | hypothetical protein/TDT family tellurite/dicarboxylate transporter |
| ? | CP000730 | 1180015 = | 83 (1.000) | intergenic (+271/+34) | USA300HOU_1109/ydiA | hypothetical protein/TDT family tellurite/dicarboxylate transporter | |||||
| * | ? | CP000730 | 300188 = | 97 (1.060) | 4 (0.050) | 3/260 | 9.7 | 4.0% | coding (455/717 nt) | ispD | 2‑C‑methyl‑D‑erythritol 4‑phosphate cytidylyltransferase |
| ? | CP000730 | 300250 = | 104 (1.220) | coding (517/717 nt) | ispD | 2‑C‑methyl‑D‑erythritol 4‑phosphate cytidylyltransferase | |||||
| * | ? | CP000730 | 2699163 = | 72 (0.780) | 23 (0.260) +TAGTGT |
3/268 | 9.9 | 24.8% | intergenic (+67/‑224) | copA/merP | P‑ATPase superfamily P‑type ATPase copper (Cu2+) transporter/MerTP family mercury (Hg2+) permease, binding protein MerP |
| ? | CP000730 | = 2699363 | 74 (0.810) | intergenic (+267/‑24) | copA/merP | P‑ATPase superfamily P‑type ATPase copper (Cu2+) transporter/MerTP family mercury (Hg2+) permease, binding protein MerP | |||||