mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.30.0 revision f53f5bf51c1f
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 12 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4365479 | 157 (1.030) | 3 (0.020) | 3/528 | NT | 1.9% | coding (1295/1302 nt) | dcuA | C4‑dicarboxylate antiporter |
| ? | NC_000913 | 4365483 = | 156 (1.020) | coding (1291/1302 nt) | dcuA | C4‑dicarboxylate antiporter | |||||
| * | ? | NC_000913 | = 4187665 | 185 (1.210) | 3 (0.020) | 3/528 | NT | 1.6% | coding (2316/4224 nt) | rpoC | RNA polymerase, beta prime subunit |
| ? | NC_000913 | 4187669 = | 184 (1.210) | coding (2320/4224 nt) | rpoC | RNA polymerase, beta prime subunit | |||||
| * | ? | NC_000913 | 4056496 = | NA (NA) | 8 (0.050) | 5/510 | NT | 4.3% | noncoding (26/85 nt) | REP295 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP295 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 4056530 = | 176 (1.200) | noncoding (60/85 nt) | REP295 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP295 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | = 3915783 | 183 (1.200) | 3 (0.020) | 3/520 | NT | 1.7% | coding (190/420 nt) | atpC | F1 sector of membrane‑bound ATP synthase, epsilon subunit |
| ? | NC_000913 | 3915788 = | 169 (1.130) | coding (185/420 nt) | atpC | F1 sector of membrane‑bound ATP synthase, epsilon subunit | |||||
| * | ? | NC_000913 | 3242761 = | 204 (1.330) | 3 (0.020) | 3/512 | NT | 1.5% | coding (554/1488 nt) | uxaA | altronate hydrolase |
| ? | NC_000913 | 3242787 = | 189 (1.280) | coding (528/1488 nt) | uxaA | altronate hydrolase | |||||
| * | ? | NC_000913 | 3217457 = | NA (NA) | 4 (0.030) | 3/518 | NT | 2.6% | noncoding (24/89 nt) | REP229 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP229 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 3217501 = | 152 (1.020) | noncoding (68/89 nt) | REP229 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP229 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | = 2911479 | 140 (0.920) | 3 (0.020) | 3/514 | NT | 2.1% | coding (2173/2235 nt) | relA | (p)ppGpp synthetase I/GTP pyrophosphokinase |
| ? | NC_000913 | 2911492 = | 145 (0.980) | coding (2160/2235 nt) | relA | (p)ppGpp synthetase I/GTP pyrophosphokinase | |||||
| * | ? | NC_000913 | = 1987441 | 103 (0.670) | 4 (0.030) | 4/510 | NT | 3.8% | intergenic (+13/+66) | ftnB/yecJ | ferritin B, putative ferrous iron reservoir/DUF2766 family protein |
| ? | NC_000913 | = 1987450 | 103 (0.700) | intergenic (+22/+57) | ftnB/yecJ | ferritin B, putative ferrous iron reservoir/DUF2766 family protein | |||||
| * | ? | NC_000913 | = 1828681 | 125 (0.820) | 4 (0.030) | 4/512 | NT | 3.1% | coding (1054/1479 nt) | astD | succinylglutamic semialdehyde dehydrogenase |
| ? | NC_000913 | = 1828695 | 129 (0.870) | coding (1040/1479 nt) | astD | succinylglutamic semialdehyde dehydrogenase | |||||
| * | ? | NC_000913 | 1722616 = | 129 (0.840) | 3 (0.020) | 3/508 | NT | 2.3% | coding (496/2013 nt) | ydhK | putative efflux protein (PET) component of YdhJK efflux pump |
| ? | NC_000913 | = 1722612 | 126 (0.860) | coding (492/2013 nt) | ydhK | putative efflux protein (PET) component of YdhJK efflux pump | |||||