mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 385 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 357,890 | 0 | C | A | 50.0% | 37.8 / 19.0 | 36 | L267F (TTG→TTT) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 941,713 | 0 | T | G | 48.5% | 87.5 / 22.6 | 66 | V252G (GTG→GGG) | dmsA | dimethyl sulfoxide reductase, anaerobic, subunit A |
| * | NC_000913 | 2,326,450 | 0 | T | G | 48.1% | 65.6 / 22.0 | 54 | G114G (GGT→GGG) | atoB | acetyl‑CoA acetyltransferase |
| * | NC_000913 | 1,097,581 | 0 | A | G | 47.5% | 93.3 / 18.6 | 61 | noncoding (72/88 nt) | serX | tRNA‑Ser |
| * | NC_000913 | 2,337,723 | 0 | A | C | 45.8% | 73.5 / 11.0 | 49 | G566G (GGT→GGG) | gyrA | DNA gyrase (type II topoisomerase), subunit A |
| * | NC_000913 | 3,511,923 | 0 | A | C | 44.9% | 111.1 / 13.9 | 78 | V141G (GTT→GGT) | yhfZ | putative DNA‑binding transcriptional regulator |
| * | NC_000913 | 3,443,277 | 0 | A | C | 44.6% | 93.7 / 15.4 | 56 | V274G (GTA→GGA) | secY | preprotein translocase membrane subunit |
| * | NC_000913 | 29,496 | 0 | T | A | 44.3% | 93.6 / 38.5 | 70 | intergenic (+301/‑155) | dapB/carA | dihydrodipicolinate reductase/carbamoyl phosphate synthetase small subunit, glutamine amidotransferase |
| * | NC_000913 | 2,781,645 | 0 | A | C | 43.7% | 124.8 / 13.1 | 72 | V361G (GTT→GGT) | ypjA | adhesin‑like autotransporter |
| * | NC_000913 | 366,526 | 0 | T | G | 43.1% | 102.2 / 16.5 | 65 | T329P (ACC→CCC) | lacI | lactose‑inducible lac operon transcriptional repressor |
| * | NC_000913 | 599,576 | 0 | T | G | 42.6% | 90.0 / 22.4 | 61 | V288G (GTG→GGG) | cusA | copper/silver efflux system, membrane component |
| * | NC_000913 | 29,486 | 0 | C | A | 41.9% | 108.7 / 40.8 | 63 | intergenic (+291/‑165) | dapB/carA | dihydrodipicolinate reductase/carbamoyl phosphate synthetase small subunit, glutamine amidotransferase |
| * | NC_000913 | 338,074 | 0 | G | T | 41.7% | 77.7 / 18.3 | 48 | V433L (GTG→TTG) | yahF | putative NAD(P)‑binding succinyl‑CoA synthase |
| * | NC_000913 | 1,842,925 | 0 | G | A | 41.7% | 28.4 / 28.8 | 49 | K185K (AAG→AAA) | gdhA | glutamate dehydrogenase, NADP‑specific |
| * | NC_000913 | 1,292,458 | 0 | T | A | 41.4% | 112.3 / 30.5 | 70 | intergenic (+93/+51) | galU/hns | glucose‑1‑phosphate uridylyltransferase/global DNA‑binding transcriptional dual regulator H‑NS |
| * | NC_000913 | 1,376,505 | 0 | A | C | 41.3% | 119.1 / 10.5 | 64 | T158P (ACC→CCC) | ycjR | putative TIM alpha/beta barrel enzyme |
| * | NC_000913 | 2,326,455 | 0 | A | G | 41.2% | 69.5 / 11.7 | 51 | E116G (GAA→GGA) | atoB | acetyl‑CoA acetyltransferase |
| * | NC_000913 | 4,555,106 | 0 | C | A | 40.9% | 142.6 / 22.5 | 66 | N177K (AAC→AAA) | uxuR | fructuronate‑inducible hexuronate regulon transcriptional repressor; autorepressor |
| * | NC_000913 | 3,995,457 | 0 | T | G | 40.7% | 100.0 / 10.2 | 60 | G232G (GGT→GGG) | dapF | diaminopimelate epimerase |
| * | NC_000913 | 2,921,166 | 0 | G | A | 40.0% | 73.6 / 22.4 | 56 | S312F (TCC→TTC) | gudP | putative D‑glucarate transporter |