mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_bme_pgi | 4,296,061 | 0 | C | T | 29.6% | 73.4 / 30.5 | 54 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913_3_bme_pgi | 526,792 | 0 | A | C | 26.6% | 106.0 / 50.5 | 81 | S1178R (AGC→CGC) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_bme_pgi | 526,796 | 0 | C | G | 26.0% | 137.6 / 60.5 | 79 | A1179G (GCG→GGG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_bme_pgi | 526,800 | 0 | A | G | 24.0% | 125.5 / 35.4 | 75 | E1180E (GAA→GAG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| Marginal new junction evidence (lowest skew 10 of 32 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_bme_pgi | = 4542691 | 35 (0.790) | 8 (0.190) | 8/268 | 4.1 | 19.1% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913_3_bme_pgi | = 4542987 | 35 (0.840) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913_3_bme_pgi | = 232564 | 34 (0.760) | 6 (0.150) | 5/262 | 5.2 | 16.0% | intergenic (+15/+33) | yafE/mltD | putative S‑adenosyl‑L‑methionine‑dependent methyltransferase/putative membrane‑bound lytic murein transglycosylase D |
| ? | NC_000913_3_bme_pgi | = 232571 | 32 (0.780) | intergenic (+22/+26) | yafE/mltD | putative S‑adenosyl‑L‑methionine‑dependent methyltransferase/putative membrane‑bound lytic murein transglycosylase D | |||||
| * | ? | NC_000913_3_bme_pgi | 2775873 = | 37 (0.830) | 5 (0.120) | 5/270 | 5.4 | 12.4% | intergenic (+57/‑46) | ypjI/yfjX | pseudogene, CP4‑57 putative prophage remnant;Phage or Prophage Related/CP4‑57 prophage; putative antirestriction protein |
| ? | NC_000913_3_bme_pgi | 2775896 = | 36 (0.860) | intergenic (+80/‑23) | ypjI/yfjX | pseudogene, CP4‑57 putative prophage remnant;Phage or Prophage Related/CP4‑57 prophage; putative antirestriction protein | |||||
| * | ? | NC_000913_3_bme_pgi | = 4456647 | 40 (0.900) | 4 (0.090) | 4/272 | 5.9 | 9.4% | coding (862/1374 nt) | mpl | UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase |
| ? | NC_000913_3_bme_pgi | = 4456657 | 39 (0.920) | coding (872/1374 nt) | mpl | UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase | |||||
| * | ? | NC_000913_3_bme_pgi | = 1939098 | NA (NA) | 4 (0.100) | 4/270 | 5.9 | NA | intergenic (+7/+124) | pykA/lpxM | pyruvate kinase II/myristoyl‑acyl carrier protein (ACP)‑dependent acyltransferase |
| ? | NC_000913_3_bme_pgi | = 1939128 | NA (NA) | noncoding (30/30 nt) | REP137 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP137 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913_3_bme_pgi | = 697486 | 35 (0.790) | 3 (0.070) | 3/260 | 6.3 | 8.4% | intergenic (‑353/+27) | metT/asnB | tRNA‑Met/asparagine synthetase B |
| ? | NC_000913_3_bme_pgi | = 697492 | 34 (0.840) | intergenic (‑359/+21) | metT/asnB | tRNA‑Met/asparagine synthetase B | |||||
| * | ? | NC_000913_3_bme_pgi | 4304576 = | 31 (0.700) | 3 (0.070) | 3/264 | 6.4 | 9.4% | intergenic (‑172/+37) | ytcA/yjcS | putative inner membrane efflux pump‑associated DUF1656 family protein/metallo‑beta‑lactamase superfamily protein |
| ? | NC_000913_3_bme_pgi | 4304604 = | 29 (0.710) | intergenic (‑200/+9) | ytcA/yjcS | putative inner membrane efflux pump‑associated DUF1656 family protein/metallo‑beta‑lactamase superfamily protein | |||||
| * | ? | NC_000913_3_bme_pgi | 2729475 = | 38 (0.850) | 3 (0.070) | 3/266 | 6.4 | 10.8% | intergenic (‑31/+141) | gltW/rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon |
| ? | NC_000913_3_bme_pgi | = 4168363 | 14 (0.340) | intergenic (+163/‑9) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||
| * | ? | NC_000913_3_bme_pgi | 3950444 = | 35 (0.790) | 3 (0.070) | 3/272 | 6.5 | 8.1% | intergenic (+24/‑63) | ilvL/ilvX | ilvG operon leader peptide/uncharacterized protein |
| ? | NC_000913_3_bme_pgi | 3950470 = | 35 (0.830) | intergenic (+50/‑37) | ilvL/ilvX | ilvG operon leader peptide/uncharacterized protein | |||||
| * | ? | NC_000913_3_bme_pgi | 3746905 = | 60 (1.350) | 4 (0.090) | 3/272 | 6.5 | 7.0% | coding (812/987 nt) | yiaO | 2,3‑diketo‑L‑gulonate‑binding periplasmic protein |
| ? | NC_000913_3_bme_pgi | 3746922 = | 50 (1.180) | coding (829/987 nt) | yiaO | 2,3‑diketo‑L‑gulonate‑binding periplasmic protein | |||||