mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 27 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | = 1932093 | NA (NA) | 5 (0.190) | 5/256 | 3.0 | NA | noncoding (8/19 nt) | REP136 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP136 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913_3_pae_tpiA | = 1932096 | NA (NA) | noncoding (11/19 nt) | REP136 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP136 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913_3_pae_tpiA | 1952909 = | 23 (0.790) | 5 (0.180) | 5/268 | 3.2 | 18.9% | coding (208/744 nt) | cmoA | carboxy‑SAM synthase |
| ? | NC_000913_3_pae_tpiA | 1952930 = | 21 (0.760) | coding (229/744 nt) | cmoA | carboxy‑SAM synthase | |||||
| * | ? | NC_000913_3_pae_tpiA | 3383284 = | 42 (1.440) | 4 (0.150) | 4/258 | 3.4 | 9.5% | intergenic (+17/+46) | degS/mdh | serine endoprotease, periplasmic/malate dehydrogenase, NAD(P)‑binding |
| ? | NC_000913_3_pae_tpiA | 3383314 = | 38 (1.420) | intergenic (+47/+16) | degS/mdh | serine endoprotease, periplasmic/malate dehydrogenase, NAD(P)‑binding | |||||
| * | ? | NC_000913_3_pae_tpiA | = 1914769 | 35 (1.200) | 4 (0.150) | 4/262 | 3.5 | 11.0% | coding (48/2049 nt) | prc | carboxy‑terminal protease for penicillin‑binding protein 3 |
| ? | NC_000913_3_pae_tpiA | = 1914775 | 32 (1.180) | coding (42/2049 nt) | prc | carboxy‑terminal protease for penicillin‑binding protein 3 | |||||
| * | ? | NC_000913_3_pae_tpiA | 3563404 = | 29 (0.990) | 4 (0.140) | 4/268 | 3.6 | 11.7% | coding (1392/1506 nt) | glpD | sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding |
| ? | NC_000913_3_pae_tpiA | 3563422 = | 33 (1.190) | coding (1410/1506 nt) | glpD | sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding | |||||
| * | ? | NC_000913_3_pae_tpiA | 758482 = | 40 (1.440) | 4 (0.140) | 4/268 | 3.6 | 9.1% | noncoding (74/118 nt) | RIP67 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP67 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site |
| ? | NC_000913_3_pae_tpiA | = 2549563 | NA (NA) | noncoding (98/98 nt) | RIP176 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP176 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913_3_pae_tpiA | 225078 = | NA (NA) | 4 (0.140) | 4/268 | 3.6 | NA | noncoding (1308/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_pae_tpiA | 225100 = | NA (NA) | noncoding (1330/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913_3_pae_tpiA | 2282818 = | 32 (1.090) | 3 (0.110) | 3/258 | 3.9 | 9.3% | intergenic (+17/+122) | rplY/yejK | 50S ribosomal subunit protein L25/spermidine nucleoid‑associated protein |
| ? | NC_000913_3_pae_tpiA | 2282846 = | NA (NA) | intergenic (+45/+94) | rplY/yejK | 50S ribosomal subunit protein L25/spermidine nucleoid‑associated protein | |||||
| * | ? | NC_000913_3_pae_tpiA | = 3357043 | 49 (1.680) | 3 (0.110) | 3/266 | 4.0 | 6.3% | coding (2319/4461 nt) | gltB | glutamate synthase, large subunit |
| ? | NC_000913_3_pae_tpiA | = 3357057 | 43 (1.560) | coding (2333/4461 nt) | gltB | glutamate synthase, large subunit | |||||
| * | ? | NC_000913_3_pae_tpiA | = 3203173 | 48 (1.640) | 3 (0.110) | 3/268 | 4.0 | 6.2% | noncoding (30/125 nt) | REP225 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP225 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | NC_000913_3_pae_tpiA | 4285252 = | NA (NA) | noncoding (35/77 nt) | REP320 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP320 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||