Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A16 F20 I40 R1
|
12 |
45.4 |
1473824 |
96.3% |
1419292 |
148.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
CP009273 |
2,719,426 |
T→C |
intergenic (‑321/+2) |
kgtP ← / ← rrfG |
alpha‑ketoglutarate transporter/5S ribosomal RNA of rrnG operon |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 2,719,426 | 0 | T | C | 100.0%
| 94.3
/ NA
| 36 | intergenic (‑321/+2) | kgtP/rrfG | alpha‑ketoglutarate transporter/5S ribosomal RNA of rrnG operon |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (24/12); total (24/12) |
ACGTATGGAAGTGGGCAAGTTGGGGAAGCCGTATCCGTTGCTGAATCTGGCATATGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATCAGACCGC > CP009273/2719280‑2719568
|
agttgtGGAAGTGGGCAAGTGGGGGAAGCCGTATCCGTTGCTGAATCTGGCATATGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCGATCCGTCAGGATGGCCTTTCGCATAATTCGa < 2:320144/144‑1 (MQ=255)
gagggagctGGGGAAGTTGGGGAAGCGGCATCCGTTGCTGAATCTGGCATATGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGGCATCCGTCAGGATGGCCTTTCGCATAATTCGATGc < 2:525466/141‑1 (MQ=25)
tGGAAGTGGGCAAGTTGGGGAAGCCGTATCCGTTGCTGAATCTGGCATATGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTCCGCCAATGCAAAAAGGCCAACCGTCAGGATGGCCTTTTGCCTAATCCGATGCCt > 2:382730/1‑149 (MQ=255)
aaGTGGGCAAGTTGGGGAAGCCGTATCCGTTGCTGAATCTGGCATATGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGc > 1:328012/1‑149 (MQ=255)
aaGTGGGCAAGTTGGGGAAGCCGTATCCGTTGCTGAATCTGGCATATGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGc > 1:463864/1‑149 (MQ=255)
aaGTGGGCAAGTTGGGGAAGCCGTATCCGTTGCTGAATCTGGCATATGAGGGAGAAGAAGTCGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTAAGGATGGCCTTTCGCATAATTCGATGCCTGGc > 1:326751/1‑149 (MQ=25)
ggCAAGTTGGGGAAGCCGTATCCGTTGCTGAATCTGGCATATGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTc > 1:242593/1‑149 (MQ=255)
cAAGTTGGGGAAGCCGTATCCGTTGCTGAATCTGGCATATGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTccc > 1:556870/1‑149 (MQ=255)
ggggAAGCCGTATCCGTTGCTGAATCTGGCATATGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTCCGCCCATGCAAGAAGGCCGTCCGTCAGGATGGCCGTTCGCATAAATCGATACCTGGCAGTTCCCtcccct > 2:507798/1‑144 (MQ=255)
ggAAGCCGTATCCGTTGCTGAATCTGGCATATGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAGAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCCCg > 1:401394/1‑149 (MQ=255)
aGCCGTATCCGTTGCTGAATCTGGCATATGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACtttccgct > 1:198256/1‑145 (MQ=255)
gTATCCGTTGCTGAATCTGGCATATGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGGCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATgggg > 1:497609/1‑149 (MQ=255)
tCCGTTGTCGAATCTGGTATCTGTGGGAGCATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGGAAAAAGGCCATCCGCCCGGATGGCCTTTATCATAATACGATGCCTGGCAGTTCCCTACCTTCGCATGTGgaga < 2:542370/149‑1 (MQ=18)
tGAATCTGGCATATGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTTTTTTCTTATGCAAAAAGGCCATCCGTCAGGATGGACTTTCGCATAATTCGCTGCCTGGCAGTTCCCTCCTCTCCCATGGGGCGACCCCacac > 2:485734/1‑149 (MQ=25)
gAATCTGGCATATGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGAATTTTTTGGTGCGCCAATGCAAAAAGGCCATCCGGCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCGACACt > 1:507331/1‑149 (MQ=25)
aaTCTGGCATATGTGGGAGTCTAAGACGGGCGGTGTCGCTTCAGGGATGTTGTTCTGCGCCAAGGCAAAAAGGCCCTCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCGACTCTCGCATGGGGAGACCCCACACTa < 2:662706/149‑1 (MQ=25)
tGGCATATGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCAt > 1:120938/1‑149 (MQ=255)
ggCATATGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGAGATCCGTCAGGATGGACTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGGCCCCACCCTACCATc > 2:642949/1‑149 (MQ=25)
gggAGTATAAGACGCGCAGCGTCGCATCAGGCTTTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGTCCCCACACTACCATCGGCGCTACg < 2:60823/149‑1 (MQ=255)
cggaggaTCACACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCCCATAATTCGATGCCTAGCACTTCCCTACTCTCGCATGGGGAGACCCCACACTACCCTCGTGGCTACg < 2:374987/148‑1 (MQ=21)
aaGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCa > 2:205809/1‑149 (MQ=255)
cgcgCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTc > 2:504397/1‑149 (MQ=255)
gccgCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGa < 2:549982/146‑1 (MQ=255)
tCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCTCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCgg < 1:715285/149‑1 (MQ=255)
tttttttCTGCGCCAATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAgg > 1:219940/1‑149 (MQ=255)
ttttCTGCGCCAATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACCTCTGAGTTCGGCAGGGGGTCAGgggg > 2:488114/1‑149 (MQ=255)
aaaaaGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGCGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGGCAGGTGGGACCACCGCGCTAAgg > 2:280284/1‑149 (MQ=255)
aaacggcATCCGTCAGGGTGGCCTTTCGCATAATTCGTTGCCGGGCTGTTCCGTACTCTCGCCTGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGgcc < 2:265581/143‑1 (MQ=14)
ggCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGgccgcc > 1:138372/1‑149 (MQ=255)
ggCCATCCGTCAGGATGGACTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGgccgcc < 1:382730/149‑1 (MQ=255)
ccatcctgacggATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACATCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGgccgaccg > 2:503865/11‑145 (MQ=14)
cATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCATGTGGGACCACCGCGCTACGGCCGCCAgg < 1:393167/149‑1 (MQ=255)
tCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAAtt > 1:652730/1‑149 (MQ=255)
aGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACCACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGAGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCt < 1:205809/149‑1 (MQ=255)
tCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGGTTTNTCAGa > 2:689673/1‑149 (MQ=18)
aTAATTCGATGCCTGGCAGTTCCATACTCTCGCATGGGGAGACCCCACTCTACCTTCTGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGAGGGACCACCGCGCTACGGCCGCCAGGCAAACTCGGTTTTATCGGACCGc > 2:504542/1‑149 (MQ=11)
|
ACGTATGGAAGTGGGCAAGTTGGGGAAGCCGTATCCGTTGCTGAATCTGGCATATGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATCAGACCGC > CP009273/2719280‑2719568
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
