Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F183 I0 R1 119 96.4 4778198 94.0% 4491506 99.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 4,370,616 A→G 100% intergenic (‑204/‑72) yjeH ← / → groS putative transporter/Cpn10 chaperonin GroES, small subunit of GroESL

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,370,6160AG94.7% 274.9 / 2.5 88intergenic (‑204/‑72)yjeH/groSputative transporter/Cpn10 chaperonin GroES, small subunit of GroESL
Reads supporting (aligned to +/- strand):  ref base A (4/1);  new base G (40/43);  total (44/44)
Fisher's exact test for biased strand distribution p-value = 3.60e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01

GAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATC  >  NC_000913/4370519‑4370712
                                                                                                 |                                                                                                
gAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGcc                                                                                                <  1:1756295/100‑1 (MQ=255)
  ggTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAg                                                                                              <  2:605024/100‑1 (MQ=255)
   gTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGc                                                                                             <  1:1024416/100‑1 (MQ=255)
   gTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGc                                                                                             >  1:2188930/1‑100 (MQ=255)
    tGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGcc                                                                                            >  1:612847/1‑100 (MQ=255)
       aTCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCggg                                                                                         <  1:655638/100‑1 (MQ=255)
       aTCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCggg                                                                                         >  1:1941917/1‑100 (MQ=255)
       aTCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCggg                                                                                         <  1:1322994/100‑1 (MQ=255)
       aTCAGGGTTTTCACCCGATTGTGTGCTGATCAGAATTTCTCTTCTTTTTCCCCCGTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCggg                                                                                         <  2:849122/100‑1 (MQ=255)
         cAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGaa                                                                                       <  1:940663/100‑1 (MQ=255)
          aGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGaaa                                                                                      >  1:1147859/1‑100 (MQ=255)
           gtgTTTTCACCCGATTTTTTGCGGATCAGAATTTTTTTTCTTTTTCTCCCTTGATGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCTGCCGGGaa                                                                                       >  2:1544820/3‑98 (MQ=255)
           gggTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAAc                                                                                     <  1:1594070/100‑1 (MQ=255)
             gTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCa                                                                                   <  1:1766550/100‑1 (MQ=255)
             gTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCa                                                                                   <  1:1766551/100‑1 (MQ=255)
              ttttCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCAc                                                                                  >  1:728423/1‑100 (MQ=255)
                ttCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCTGGAAACCACGt                                                                                >  2:2288483/1‑100 (MQ=255)
                ttCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGt                                                                                >  1:1487394/1‑100 (MQ=255)
                 tCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTa                                                                               >  1:459999/1‑100 (MQ=255)
                    cccGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGc                                                                            >  2:1111522/1‑100 (MQ=255)
                         ttttGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCgn                                                                       <  1:1170479/100‑2 (MQ=255)
                         ttttGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCgg                                                                       <  1:1419631/100‑1 (MQ=255)
                          tttGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGc                                                                      <  2:401848/100‑1 (MQ=255)
                           ttGTGCTGATCAGAATTTTTGTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTTGCCAGCCGGGAAACCACGTAAGCTCCGGCg                                                                     <  1:82413/100‑1 (MQ=255)
                             gtgCTGATATGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGc                                                                      <  2:1968473/97‑1 (MQ=255)
                              tgCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGc                                                                      <  2:116864/96‑1 (MQ=255)
                                cTGATCAGAGTTTTTTTTCTTTTTCCCACTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCAcc                                                                >  2:994885/1‑100 (MQ=255)
                                cTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCAcc                                                                >  1:2153270/1‑100 (MQ=255)
                                  gATCAGAATTTTTTTTTTTTTTTTTCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTTTTCGCTAGCCGGGAAACCACGTAAGCTCCGGCGTCa                                                                  >  2:7541/1‑96 (MQ=255)
                                     cAGAATTTTTTTTTTTTTTTTTTTTTTAAGGGGCGAAGCCTCATCCCCATTTCTCTTGTCACCAGCCGGGTACCCACGTAAGCTCCGGCGTCACCCATa                                                            >  1:1345806/1‑99 (MQ=255)
                                     cAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATaa                                                           <  1:1794223/100‑1 (MQ=255)
                                       gAATTTTTTTTTTTTTTTCCCCTTGAAAGGGCGAAGCCTCATCCCTATTTCTCTTGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACTCATaa                                                           >  2:1191259/1‑98 (MQ=255)
                                       gAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTTGCCTGTCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACa                                                         >  2:445987/1‑100 (MQ=255)
                                       gAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACa                                                         <  1:23830/100‑1 (MQ=255)
                                       gAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACa                                                         <  1:615463/100‑1 (MQ=255)
                                        aaTTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACACATAACAg                                                        <  2:501943/100‑1 (MQ=255)
                                             tttttctttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAATCTCCGGCGTCACCCATAACAGATACg                                                   <  2:371269/100‑1 (MQ=255)
                                               tttctttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACgg                                                  >  1:393465/1‑99 (MQ=255)
                                               tttctttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGa                                                 <  1:1456918/100‑1 (MQ=255)
                                                ttctttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGAc                                                <  1:884585/100‑1 (MQ=255)
                                                 tctttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACt                                               >  2:182438/1‑100 (MQ=255)
                                                  ctttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACCGATACGGACtt                                              >  1:791701/1‑100 (MQ=255)
                                                   tttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACttt                                             >  1:173193/1‑100 (MQ=255)
                                                    ttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTtc                                            <  1:1111527/100‑1 (MQ=255)
                                                    ttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTtc                                            >  1:581701/1‑100 (MQ=255)
                                                      ttcCCCTTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTtct                                           <  2:1951873/99‑1 (MQ=255)
                                                        cccccTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCaa                                        >  1:2221023/1‑100 (MQ=255)
                                                         ccccTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCaaa                                       <  1:1926553/100‑1 (MQ=255)
                                                          cccTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAg                                      <  1:667244/100‑1 (MQ=255)
                                                           ccgtGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAgg                                     <  2:2184265/97‑1 (MQ=255)
                                                             ttGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAgg                                     <  2:980173/98‑1 (MQ=255)
                                                               gAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGagag                                 <  1:1692921/100‑1 (MQ=255)
                                                                aaGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGt                                <  2:1682715/100‑1 (MQ=255)
                                                                  ggggCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTa                              <  2:547353/100‑1 (MQ=255)
                                                                  ggggCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTa                              >  1:44685/1‑100 (MQ=255)
                                                                   gggCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTAt                             >  2:314155/1‑100 (MQ=255)
                                                                   gggCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTAt                             <  1:766525/100‑1 (MQ=255)
                                                                    ggCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATc                            >  2:139944/1‑100 (MQ=255)
                                                                    ggCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCAGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATc                            <  2:123356/100‑1 (MQ=255)
                                                                    ggCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATc                            >  1:1691650/1‑100 (MQ=255)
                                                                     gCGAAGCCTCATCCCCATTTCTCTGGTCGCCCGCCGGGGAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATc                            <  2:1676561/99‑1 (MQ=255)
                                                                     gCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCa                           >  1:352570/1‑100 (MQ=255)
                                                                      cGACGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCaa                          >  1:622281/1‑100 (MQ=255)
                                                                       gAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAAt                         >  1:59182/1‑100 (MQ=255)
                                                                       gAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAAt                         <  1:1176600/100‑1 (MQ=255)
                                                                       gAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAAt                         >  1:1144489/1‑100 (MQ=255)
                                                                        aaGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATg                        <  2:934440/100‑1 (MQ=255)
                                                                          gCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGaa                      <  1:715605/100‑1 (MQ=255)
                                                                          gCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGaa                      >  1:676702/1‑100 (MQ=255)
                                                                           cgtCATCCCCATTCCTCTGGTCGCCAGCCGGAAAACCACGTATGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAat                     >  1:1609362/3‑100 (MQ=255)
                                                                            cTCATCCCCATTTCTCTGGTCGCCAGCCGGGACCCCACTTAAGCTCCCGCCTCACCCATCACAGATACGACCTTTCTCACCGGAGAGATATCAATGaa                      >  2:1447400/1‑98 (MQ=255)
                                                                            cTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAata                    >  2:658527/1‑100 (MQ=255)
                                                                                  cccATTTCTCTGGTCGCCGGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTc              >  2:2136413/1‑100 (MQ=255)
                                                                                  cccATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTc              >  2:1721871/1‑100 (MQ=255)
                                                                                  cccATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTc              >  1:1023974/1‑100 (MQ=255)
                                                                                  cccATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTc              <  2:676700/100‑1 (MQ=255)
                                                                                   ccATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTcc             <  1:1270354/100‑1 (MQ=255)
                                                                                   ccATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTAAAAGGAGAGTTATCAATGAATATTCGTcc             >  2:704909/1‑100 (MQ=255)
                                                                                      tttCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGt               <  2:1965598/95‑1 (MQ=255)
                                                                                      tttCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAAAATTCGTCCAtt          >  1:2056464/1‑100 (MQ=255)
                                                                                       ttCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTg         <  1:1212988/100‑1 (MQ=255)
                                                                                         ctctGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCa       <  1:256033/100‑1 (MQ=255)
                                                                                          tctGGTCGCCAGCCGGGAAAGCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTCTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCAt      <  2:828631/100‑1 (MQ=255)
                                                                                           ctGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATg     >  1:1126454/1‑100 (MQ=255)
                                                                                           ctGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATg     >  1:55074/1‑100 (MQ=255)
                                                                                             ggTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGAt   >  2:1104513/1‑100 (MQ=255)
                                                                                             ggTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAAAAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAAAATTCGACCATTGCATg     >  1:2344023/1‑98 (MQ=255)
                                                                                              gTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATc  >  1:1367257/1‑100 (MQ=255)
                                                                                                 |                                                                                                
GAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATC  >  NC_000913/4370519‑4370712

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A