Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F232 I0 R1 243 156.3 7646460 93.8% 7172379 99.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 4,370,616 A→G 100% intergenic (‑204/‑72) yjeH ← / → groS putative transporter/Cpn10 chaperonin GroES, small subunit of GroESL

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,370,6160AG97.5% 607.9 / 1.2 186intergenic (‑204/‑72)yjeH/groSputative transporter/Cpn10 chaperonin GroES, small subunit of GroESL
Reads supporting (aligned to +/- strand):  ref base A (2/3);  new base G (80/99);  total (83/103)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.63e-01

Only 100 of 186 total aligned reads displayed.

GAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATC  >  NC_000913/4370519‑4370712
                                                                                                 |                                                                                                
gAGGTGATTCAGTGTTTTCTCCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGcc                                                                                                <  2:1243074/100‑1 (MQ=255)
gAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGcc                                                                                                <  1:3686123/100‑1 (MQ=255)
 aGGTGAATCAGTGTTTTCACCCGATTTTGTGCTGGTCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGcc                                                                                                <  2:1539887/99‑1 (MQ=255)
  ggTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAg                                                                                              >  1:3655913/1‑100 (MQ=255)
  ggTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAg                                                                                              >  2:283163/1‑100 (MQ=255)
   gTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGc                                                                                             <  1:2896949/100‑1 (MQ=255)
   gTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGc                                                                                             <  1:2231610/100‑1 (MQ=255)
       aTCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTTTTTTTTTTTCTTGAAGAAGCCAAGCCTCATCCTCATTTCTCTGCTCGCCATCCgg                                                                                          >  2:2451078/1‑99 (MQ=255)
          aGGGTTTTCATCAGATTTTGTGGTGATCAGAATTTTTTCTCTTTTTCCCCCTTGAAGGGGCGAAGCATCATTCCCCTTTCTCGGGGCGCCAGCCGGGaa                                                                                       <  2:3777725/99‑1 (MQ=255)
          aGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGaaa                                                                                      <  1:532554/100‑1 (MQ=255)
          aGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGaaa                                                                                      >  2:3056355/1‑100 (MQ=255)
          aGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGaaa                                                                                      >  1:1796493/1‑100 (MQ=255)
          aGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGACTCACCCCCATCTCTCTGGTCGCCAGCCGGGaaa                                                                                      >  2:1517720/1‑100 (MQ=255)
            ggTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCTTTTCTCTGGTCGCCAGCCGGGAAAcc                                                                                    >  2:1450194/1‑100 (MQ=255)
              ttttCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCAc                                                                                  <  1:1948234/100‑1 (MQ=255)
                 tCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTa                                                                               >  2:1605857/1‑100 (MQ=255)
                 tCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTGTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGt                                                                                <  1:1373454/99‑1 (MQ=255)
                   aCCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAg                                                                             >  1:3304105/1‑100 (MQ=255)
                   aCCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAg                                                                             <  1:2518556/100‑1 (MQ=255)
                     ccGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGc                                                                            <  2:45094/99‑1 (MQ=255)
                      cGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTc                                                                          >  2:1091870/1‑100 (MQ=255)
                       gATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTcc                                                                         <  1:2978533/100‑1 (MQ=255)
                       gATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTcc                                                                         <  1:417593/100‑1 (MQ=255)
                         ttttGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCgg                                                                       >  1:3179763/1‑100 (MQ=255)
                          tttGGGCTGATCAGAATTTTTTGTTTTTTTCGGCTTTCAAGGGGTGAAGCCTCATCCACATTTCTCTGGTCGCCAGCCGGGAAACCGCGTAAGCCCCgg                                                                       <  2:668973/99‑1 (MQ=255)
                             gtgCTTATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCg                                                                     <  2:1527893/98‑1 (MQ=255)
                             gtgCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTc                                                                   >  1:1202661/1‑100 (MQ=255)
                               gCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCAc                                                                 <  1:1964458/100‑1 (MQ=255)
                               gCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCAc                                                                 <  1:2663146/100‑1 (MQ=255)
                               gCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCAc                                                                 <  2:3655886/100‑1 (MQ=255)
                                cTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCAcc                                                                <  2:2181786/100‑1 (MQ=255)
                                 tGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCAccc                                                               <  1:3786686/100‑1 (MQ=255)
                                  gATCAGAATTTTTTTTCTTTTTTTCCTTTGAAGGGGCGAAGCCTCATCCCCTTTTCTCTGGTCTCCAGCCGGGTAACCACGTAAGCTCCTGCGTCACCCa                                                              >  2:2010628/1‑100 (MQ=255)
                                  gATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCCCCCa                                                              >  2:2906593/1‑100 (MQ=255)
                                  gATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCa                                                              >  2:1347423/1‑100 (MQ=255)
                                     cAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATaa                                                           <  1:2909218/100‑1 (MQ=255)
                                     cAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTATGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATaa                                                           >  2:3110184/1‑100 (MQ=255)
                                      aGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAAc                                                          <  1:1451233/100‑1 (MQ=255)
                                      aGAATTTTTTGTCTTTTTCGCCCTTGAAGGGGCGATGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAAc                                                          <  2:459/100‑1 (MQ=255)
                                       gAATTTTTTTTTTTTTTCCTTCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCAt                                                             >  2:2143798/1‑96 (MQ=255)
                                       gAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACa                                                         <  1:1520236/100‑1 (MQ=255)
                                       gAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACa                                                         <  2:911918/100‑1 (MQ=255)
                                         aTTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCAt                                                             <  1:2276128/94‑1 (MQ=255)
                                         aTTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGa                                                       >  1:402139/1‑100 (MQ=255)
                                              ttttctttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACgg                                                  >  1:2093530/1‑100 (MQ=255)
                                              ttttctttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACg                                                   <  1:937645/99‑1 (MQ=255)
                                                ttctttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGAc                                                <  2:1960683/100‑1 (MQ=255)
                                                  ctttttcCCCCTCGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACtt                                              >  2:2465299/1‑100 (MQ=255)
                                                   tttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACttt                                             >  1:3693765/1‑100 (MQ=255)
                                                    ttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTtc                                            >  2:2623630/1‑100 (MQ=255)
                                                    ttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTtc                                            >  2:84661/1‑100 (MQ=255)
                                                      ttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTtctc                                          <  1:2936492/100‑1 (MQ=255)
                                                       tcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCa                                         >  1:1134973/1‑100 (MQ=255)
                                                       tcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCa                                         >  2:3509639/1‑100 (MQ=255)
                                                       tcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCa                                         >  2:2710514/1‑100 (MQ=255)
                                                       tcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCa                                         <  1:717159/100‑1 (MQ=255)
                                                        cccccTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCaa                                        >  1:2838690/1‑100 (MQ=255)
                                                         ccccTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCaaa                                       >  1:1333529/1‑100 (MQ=255)
                                                         ccccTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCaaa                                       >  1:3438666/1‑100 (MQ=255)
                                                         ccccTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTGCTCaaa                                       >  1:3432335/1‑100 (MQ=255)
                                                          cccTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTTGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAg                                      <  2:3722174/100‑1 (MQ=255)
                                                          cccTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCTGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAg                                      >  2:2112370/1‑100 (MQ=255)
                                                           ccTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAgg                                     >  1:2422320/1‑100 (MQ=255)
                                                            ttgggaGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTtctc                                          <  2:2822708/89‑1 (MQ=255)
                                                            cTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAg                                      <  2:1143819/98‑1 (MQ=255)
                                                              tGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAAATACGGACTTTCTCAAAGgaga                                  >  2:2581715/1‑100 (MQ=255)
                                                               gAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGagag                                 <  1:790192/100‑1 (MQ=255)
                                                                aaGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAATCCACGTAAGCTGCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGagag                                 <  2:2076194/99‑1 (MQ=255)
                                                                aaGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGt                                <  1:1239140/100‑1 (MQ=255)
                                                                 aGGGGCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGtt                               >  2:3682229/1‑100 (MQ=255)
                                                                 aGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTTTCAAAGGAGAGtt                               <  1:3533789/100‑1 (MQ=255)
                                                                  ggggCTAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGAGAAACCACGTAAGCTCCGGCGTCACCCAGAACAGATACGGACTTTCCCAAAGGAGACTTa                              >  2:336710/1‑100 (MQ=255)
                                                                  ggggCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTa                              <  2:1909367/100‑1 (MQ=255)
                                                                    ggCGAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATc                            <  1:2603850/100‑1 (MQ=255)
                                                                       gAAGCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAATGAGAGTTATCAAt                         >  1:1514109/1‑100 (MQ=255)
                                                                       gAAGCCTCATCCCCATTTCTCTGGTCCCCAGCCGGGAAACCACGTAAGCTCCGGCGTTACCCATAACAGATACGGACTTTCTCAAAGGAGAGTCATCAAt                         <  2:1888615/100‑1 (MQ=255)
                                                                          gCCTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGaa                      <  1:1091879/100‑1 (MQ=255)
                                                                           ccTCATCCCCATTAATATGGTCGCCAGCCGGGAATCCACGTAAGCTCCGACGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGGTATCAATGaa                      >  2:2220982/1‑99 (MQ=255)
                                                                            cTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGaa                      <  2:2790603/98‑1 (MQ=255)
                                                                            cTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAata                    >  2:2659595/1‑100 (MQ=255)
                                                                            cTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAata                    >  2:1140797/1‑100 (MQ=255)
                                                                            cTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAata                    >  2:745127/1‑100 (MQ=255)
                                                                            cTCATCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAata                    >  2:69634/1‑100 (MQ=255)
                                                                               aTCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTc                 <  1:1605867/100‑1 (MQ=255)
                                                                                tCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCg                <  1:3233258/100‑1 (MQ=255)
                                                                                tCCCCATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCg                >  2:1784389/1‑100 (MQ=255)
                                                                                  cccATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTc              >  1:2862018/1‑100 (MQ=255)
                                                                                  cccATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTc              >  1:2377761/1‑100 (MQ=255)
                                                                                  cccATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTc              >  1:1910467/1‑100 (MQ=255)
                                                                                  cccATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTc              <  1:1388695/100‑1 (MQ=255)
                                                                                   ccATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTcc             >  1:3402603/1‑100 (MQ=255)
                                                                                    cATTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTcc             <  2:3399714/99‑1 (MQ=255)
                                                                                     aTTTCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCAt           >  1:432610/1‑100 (MQ=255)
                                                                                      tttCTCTGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCAtt          <  2:394714/100‑1 (MQ=255)
                                                                                         ctctGGTCGCCAGCCGGGAAACCACGTAAGCTCTGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCa       <  1:24651/100‑1 (MQ=255)
                                                                                           ctGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCCAAGGAGAGTTATCAATGAATATTCGTCCATTGCATg     >  2:76351/1‑100 (MQ=255)
                                                                                           ctGGTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATg     >  2:1930581/1‑100 (MQ=255)
                                                                                             ggTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGa    <  1:1536469/99‑1 (MQ=255)
                                                                                             ggTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGAt   >  2:399845/1‑100 (MQ=255)
                                                                                              gTCGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATc  >  2:1454170/1‑100 (MQ=255)
                                                                                                 |                                                                                                
GAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATC  >  NC_000913/4370519‑4370712

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A